BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495706
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56180.1 | Symbols: ATARP8, ARP8 | actin-related protein 8 |... 2442 0.0
> AT5G56180.1 | Symbols: ATARP8, ARP8 | actin-related protein 8
| chr5:22737325-22741031 REVERSE LENGTH=1675
Length=1675
Score = 2442 bits (1322), Expect = 0.0
Identities = 1481/1558 (95%), Gaps = 9/1558 (1%)
Strand=Plus/Plus
Query 1 ATGATTCTTAGGAAAGTATGGGGATCGGTGTGGAACCGATCGAATAGTGGCAAGGATTTG 60
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 46 ATGATCCTGAAGAAAGTATGGGGATCGGTGTGGAACCGATCGAATAGTGGCAAGGATTTG 105
Query 61 GTGACTCATCAGAGAGCGATGACTCATGTTGCTCCTCCTCTGTTGTTGTCTTCTTCTTCG 120
|||| ||||||||||||||| | ||| | |||||||||||| ||||||||||| |||
Sbjct 106 GTGAATCATCAGAGAGCGAT--C-GATG-T--TCCTCCTCTGTTATTGTCTTCTTCATCG 159
Query 121 TCTCTTGGTGCGTTTGATCAGCTACCGATGGATATTGTAGTTCAGATATTGATGATGATG 180
|||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||
Sbjct 160 TCTCTTGGTGCGTTTGATCAGCTACCGATGGATATTCTAGTCCAGATACTGATGATGATG 219
Query 181 GAGCCAAGAGATGCTGTGAAATTAGGCTTAACTTGCAAAGCCTGGAAATGTGTAGCTGGT 240
||||||| ||||||||||||||| |||||||| ||||||||||||||||| |||||| ||
Sbjct 220 GAGCCAAAAGATGCTGTGAAATTGGGCTTAACGTGCAAAGCCTGGAAATGCGTAGCTAGT 279
Query 241 GGTAATCGTCTCTGGATATTTTATCTCCAGTGTTCTCAAGAGCCATGGGACTCCATTTTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GGTAATCGTCTCTGGATATTTTATCTCCAGTGTTCTCAAGAGCCATGGGACTCCATTTTC 339
Query 301 TTCGCTGAAACTAGTTTGCGTTCTGGTTATCCTCTCCGAATGATTTCTAGTCAATCAGGA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TTCGCTGAAACTAGTTTGCGTTCTGGTTATCCTCTCCGAATGATTTCTAGTCAATCAGGA 399
Query 361 GACTTGTCGTTTATGCACATTTATAGTCAGAGGGCACAAGTTCCTGGTTCTATCATTATC 420
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 GAGTTGTCGTTTATGCACATTTATAGTCAGAGGGCACAAGTTCCTGGTTCTATCATTATT 459
Query 421 GATGGTGGTTCTGGATATTGTAAGTTTGGTTGGAGCAAGTATGCTTCACCTTCTGGACGT 480
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 460 GATGGTGGTTCTGGATATTGTAAGTTTGGTTGGAGCAAGTATGCGTCTCCTTCTGGACGT 519
Query 481 TCTGCTACTTTTTTGGAATTTGGTAACATTGAGTCGCCCATATATGCTAGACTTCAACAG 540
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 520 TCTGCTACTTTTTTGGAATTTGGTAACATTGAGTCACCGATTTATGCTAGACTTCAACAG 579
Query 541 TTCTTCGCTACCATTTTCACCAGGATGCAGGTGAAGCCCTCTATGCAGCCAATAGTGGTA 600
||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 580 TTCTTTGCAACCATTTTCACCAGGATGCAGGTAAAGCCCTCTATGCAGCCAATAGTGGTA 639
Query 601 TCACTACCTCTCTGCCATTTTGATGATACTGAATCGGCCAGGGCATCAAGGCGGCAACTC 660
||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 640 TCACTACCTCTCTGCCATTTTGATGATACTGAATCAGCCAAGGCATCAAGGCGGCAACTT 699
Query 661 AAGACTGCTATCCTCAATGTCTTATTTGACATGAATGTTCCTGCAGTGTGTGCAGTTAAT 720
||||||||||| |||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 700 AAGACTGCTATTTTCAATGTCTTGTTTGACATGAACGTCCCTGCAGTGTGTGCAGTTAAT 759
Query 721 CAGGCTGTGTTAGCTCTATATGCAGCACGGCGGACATCTGGAATTGTTGTCAACATTGGT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 760 CAGGCTGTGTTAGCTCTATATGCAGCACGGCGGACATCTGGAATTGTTGTCAACATTGGT 819
Query 781 TTCCAAGTCATCACCATTCTTCCAATTTTGCATGGTAAGGTGATGCGCCAGGTAGGTGTA 840
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 820 TTCCAAGTCATCACCATTCTTCCGATTTTACATGGTAAGGTGATGCGCCAGGTAGGTGTA 879
Query 841 GAAGTCATTAGTTTTGGAGCATTGAAACTCACGGGCTTCCTTAAGGAGAAGATGCAAGAG 900
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GAAGTCATTGGTTTTGGAGCATTGAAACTCACGGGCTTCCTTAAGGAGAAGATGCAAGAA 939
Query 901 AACAACATGTCCTTTCAATCACTCTACACTGTTCGTACTCTTAAAGAGAAACTGTGTTAT 960
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 940 AACAACATTTCCTTTCAATCACTCTACACTGTTCGTACTCTTAAAGAGAAACTGTGTTAT 999
Query 961 GTGGCTCTTGATTATAAAGCTGAACTTTCAAAAGACACACAAGCTTCAGTGGAAGTGTCA 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1000 GTGGCTCTTGATTATAAAGCTGAACTTTCAAAAGACACACAAGCTTCAGTGGAAGTTTCA 1059
Query 1021 GGTGAAGGATGGTTTACTTTGTCAAAAGAGCGTTTCCAGACAGGGGAGATATTATTCCAA 1080
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 1060 GGTGAAGGATGGTTTACTTTATCAAAAGAGCGTTTCCAAACAGGGGAGATATTATTCCAA 1119
Query 1081 CCACGTCTCGCTGGAATGCGTGCAATGAGTCTGCACCAGGCAGTCTCGCTCTGTATGGAC 1140
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1120 CCACGTCTCGCTGGAATGCGTGCAATGAGTCTGCACCAGGCCGTCTCGCTCTGTATGGAC 1179
Query 1141 CACTGTGATGCAGCGGGACTTACAGGTGACGATAGTTGGTTCAAGACTGTAGTCCTAACT 1200
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1180 CACTGTGATGCAGCAGGACTTACAGGTGACGATAGTTGGTTCAAGACTGTAGTACTAACT 1239
Query 1201 GGGGGAAGCGCGTGTTTGCCTGGACTCTCAGAGAGGCTAGAGAGAGAACTGCGTGAACAC 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1240 GGGGGAAGCGCGTGTTTGCCTGGACTCTCAGAGAGGCTAGAGAGAGAACTGCAAGATCAC 1299
Query 1261 CTTCCGTCATCTATAAGCAATGGAGTCAGAGTAATCCCTCCTCCGTGCGGCGTGGACACA 1320
||||| ||||||||||| || ||| |||||||||| |||||||| | |||||||||||||
Sbjct 1300 CTTCCTTCATCTATAAGTAACGGAATCAGAGTAATACCTCCTCCTTACGGCGTGGACACA 1359
Query 1321 TCATGGCATGGGGCAAAGCTTATCAGTAACTTGAGCACCTTTCCTGGTCCTTGGTGTATC 1380
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 1360 TCATGGCATGGGGCAAAGCTTATTAGTAATTTGAGCATCTTTCCTGGTCCTTGGTGTATC 1419
Query 1381 ACAAGGAAGCAGTTCCGTCGTAAGTCGAGACTCATGTGGTGAATCTTTCCTACCATCGCG 1440
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1420 ACAAGGAAGCAGTTCCGTCGCAAGTCAAGACTCATGTGGTGAATCTTTCCTACCATCGC- 1478
Query 1441 A-AGACAGAGTGAGAGGCAGGTTGTCAGCTGTTCTAAGGTACTTTGCAAGTCTTTAGATA 1499
| |||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1479 ACAGACCGAGTGAGAGGCAGGTTA-CAGCTGTTATAAGGTACTTTGCAAGTCTTTAGATA 1537
Query 1500 AGTAAGTATATGTATAGTGTCATACTTGATTATACTCAAAAGCCACAAACAGCAAACA 1557
|||| |||||||||||| ||||||||||||| ||||||||||||| ||| | ||||||
Sbjct 1538 AGTATGTATATGTATAGAGTCATACTTGATTGTACTCAAAAGCCATAAAGAACAAACA 1595
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76857034395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5