BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495716 Length=907 Score E Sequences producing significant alignments: (Bits) Value AT5G56260.1 | Symbols: | Ribonuclease E inhibitor RraA/Dimethy... 1328 0.0 > AT5G56260.1 | Symbols: | Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase | chr5:22775325-22777304 REVERSE LENGTH=1013 Length=1013 Score = 1328 bits (719), Expect = 0.0 Identities = 858/923 (93%), Gaps = 17/923 (2%) Strand=Plus/Plus Query 1 GTCAATGACCCGACCCGAGAAAAGCGTGTCGGATTGAAAATACCCGCACCGACGAGTTTA 60 ||||| || ||||||||||||||||| |||||||||||||||||||||||| || ||||| Sbjct 2 GTCAACGATCCGACCCGAGAAAAGCGGGTCGGATTGAAAATACCCGCACCGTCGGGTTTA 61 Query 61 CGATAGGAGA-ACCAAGTGCCTCTAATGGCACAAGCTTCTATGAGGATTTTTCAGTAAAT 119 |||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 62 CGATAGGAGAGACCAAGTGGCTCTCATGGCACAAGCTTCTATGAGGATTTTTCAGTAAAT 121 Query 120 -G---G-CTGACACTAGGAAGCTGACCTCACTCGCTACTTGGGGTCAatatatatatata 174 | | ||||||| || ||||||||||||||||||||||||| | | | | || ||||| Sbjct 122 GGATAGCCTGACACGAGAAAGCTGACCTCACTCGCTACTTGGGTTGATTGTGTAAATATA 181 Query 175 tGTAAGTATCTTCGTTGAGAAATTGGGACTCTGTTCTGTTGTGGAAAGCCGAAA------ 228 || ||||||| |||||||||||||||||||||| ||||||| ||||||||||| Sbjct 182 TGAAAGTATCGTCGTTGAGAAATTGGGACTCTGATCTGTTGCAGAAAGCCGAAAGCTTTG 241 Query 229 G-CTTTGGAGCTTTAACCTCTTTCTCTGTACACATACAGAATCTCCCATGGCTGCATTTG 287 | |||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||| Sbjct 242 GTCTTTGGAGCTCTAACCTCTGCCTCTGAACACACACAGAATCTCCCATGGCTGCATTTG 301 Query 288 CAACCGCAGAAGCGTGTGACAGCAACGCAGAACTAATATCAAACGGAGACTTATGCGCTC 347 |||| |||||||||||||||||||||||||||||||||||||| ||||||||| |||||| Sbjct 302 CAACGGCAGAAGCGTGTGACAGCAACGCAGAACTAATATCAAATGGAGACTTACGCGCTC 361 Query 348 TCCACCCAATCTTCAAGATCTATGGCCAAAGAAGATGCTTCTCAGGACCAATCGTGACTC 407 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 TTCACCCAATCTTCAAGATCTATGGCCAAAGAAGATGCTTCTCAGGACCAATCGTGACTC 421 Query 408 TCAAGGTCTTTGAAGACAATGTCCTCGTCAGAAACCAACTAGAGACAAAAGGAGAAGGCG 467 ||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| Sbjct 422 TCAAGGTCTTTGAAGACAATGTCCTCGTCAGAAACCAACTAGAAACGAAAGGAGAAGGCG 481 Query 468 GAGTCTTAGTTATAGACGGTGGTGGAAGCATGAGATGTGCTCTTGTTGGAGGAAACCTCG 527 ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| Sbjct 482 GAGTCTTAGTTATAGACGGTGGTGGAAGCATGAGATGCGCGCTTGTTGGAGGAAACCTCG 541 Query 528 GACAGTTAGCTCAGAACAACGGGTGGTCGGGGATTGTTGTGAATGGATGTGTTAGAGATG 587 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 542 GACAGTTAGCTCAGAACAACGGGTGGTCGGGGATTGTTGTGAATGGATGCGTTAGAGATG 601 Query 588 TGGATGAGATCAATGACTGCGATGTTGGGGTCAGGGCCTTGGGATCTAACCCATTGAAGT 647 ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | Sbjct 602 TGGATGAGATCAATGACTGCGATGTTGGGGTCAGGGCATTGGGATCTAACCCGTTGAAAT 661 Query 648 CTACTAAGAAAGGTCATGGTGAGAAGAATGTACCTGTTCATATTGGAGGAACTTTGATTA 707 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 662 CTACTAAGAAAGGTCATGGTGAGAAGAATGTGCCGGTTCATATTGGAGGAACTTTGATTA 721 Query 708 GAGATGGAGAGTGGCTATATGCTGATAGTGATGGTATCTTGATCTCCAAGACCGAACTCT 767 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 722 GAGATGGAGAGTGGCTATATGCTGATAGTGATGGTATCTTGATCTCCAAGACCGAACTCT 781 Query 768 CTGTTTGAGTCAGAAGGTTTCCTTGATAGTGCTAAGAGACTGCAGCTTCTTGAAGCAAGG 827 ||||||||||||||| |||||| |||||||||||||||||| |||||||||| ||||||| Sbjct 782 CTGTTTGAGTCAGAACGTTTCCGTGATAGTGCTAAGAGACTACAGCTTCTTGGAGCAAGG 841 Query 828 TGGTTTATTTGAATTCTTA-GTAATCTGTTTAATACTCCAAATAATCATTTCG-TG-CAA 884 ||||||||| ||||||||| | ||||||||||||||||||||||||||||| | ||| Sbjct 842 TGGTTTATTCGAATTCTTAAG-AATCTGTTTAATACTCCAAATAATCATTTTTATTACAA 900 Query 885 TATACTTACGTTTTGTGAAATTA 907 |||||||||||||| |||||||| Sbjct 901 TATACTTACGTTTTATGAAATTA 923 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44306517654 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5