BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495757
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56650.1 | Symbols: ILL1 | IAA-leucine resistant (ILR)-like ... 2019 0.0
AT5G56660.1 | Symbols: ILL2 | IAA-leucine resistant (ILR)-like ... 2006 0.0
> AT5G56650.1 | Symbols: ILL1 | IAA-leucine resistant (ILR)-like
1 | chr5:22930825-22932778 FORWARD LENGTH=1607
Length=1607
Score = 2019 bits (1093), Expect = 0.0
Identities = 1400/1540 (91%), Gaps = 54/1540 (4%)
Strand=Plus/Plus
Query 1 ATGGCTCTAAGCAACTTTTTAACTTTCCAACTACT-C--CTTCTACTTCGTGTTTCATCG 57
|||||||||| ||||||||| |||||||||||||| | |||||||||||||||||||||
Sbjct 1 ATGGCTCTAAACAACTTTTTGACTTTCCAACTACTCCTTCTTCTACTTCGTGTTTCATCG 60
Query 58 GAATCTTCATGGA---TCGCCGGCGATGTGTCTCAAATCCAGAAGAACCTCCTTGAATCT 114
|||||| |||||| ||||||| |||||||||| ||||| || || |||| |||| |
Sbjct 61 GAATCTCCATGGATCGTCGCCGGAGATGTGTCTCGAATCCCGATCAATTTCCTCGAAT-T 119
Query 115 -GCGAAGAGTCCAGATGTCTTCGATTGGATGGTGAGAATCAGAAGGAAAATCCACGAGAA 173
|| ||||| || || || ||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 AGCAAAGAGCCCGGAGGTTTTCGATTCAATGGTGAGAATCAGAAGGAAAATCCACGAGAA 179
Query 174 TCCTGAGCTTGGTTACGAAGAATTCGAGACCAGCAAGCTCATTAGGTCGGAGCTTGACCT 233
||||||||| || ||||| |||||||| || || ||| ||||||||||||||||||||||
Sbjct 180 TCCTGAGCTGGGATACGAGGAATTCGAAACTAGTAAGTTCATTAGGTCGGAGCTTGACCT 239
Query 234 TCTCGGAATCAAGTATAGGTATCCAGTAGCTATCACCGGTATTATCGGATATATCGGCAC 293
| ||||| | |||||||||| ||| |||||||||||||||||||||||||||||||| ||
Sbjct 240 TATCGGAGTTAAGTATAGGTTTCCGGTAGCTATCACCGGTATTATCGGATATATCGGTAC 299
Query 294 CGGAGAACCACCATTCGTCGCCCTGAGAGCTGATATGGATGCTTTGCCTATTCAGGAAGC 353
||||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 300 CGGAGAACCACCATTCGTCGCTCTAAGAGCAGATATGGATGCTTTGCCTATTCAGGAAGC 359
Query 354 TGTTGAGTGGGAGCACAAGAGC-AAAATCCCTGGTAAAATGCATGCTTGTGGACATGATG 412
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||
Sbjct 360 TGTTGAGTGGGAGCACAAGAGCAAAAAT-CCTGGAAAAATGCATGCTTGTGGACATGATG 418
Query 413 GTCATGTTGCTATGCTTCTTGGTGCTGCAAAGATACTTCAAGAGCATCGCC-ACGATTTG 471
|||||||||||||||||||||||||||| |||||||||||| | ||||||| || |||||
Sbjct 419 GTCATGTTGCTATGCTTCTTGGTGCTGCTAAGATACTTCAACAACATCGCCAAC-ATTTG 477
Query 472 CAGGGAACTGTGGTGCTTATCTTTCAGCCAGCTGAGGAAGGTTTGAGCGGAGCAAAGATG 531
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 478 CAGGGAACTGTGGTGCTTATCTTTCAGCCAGCTGAGGAAGGTTTGAGTGGAGCAAAGATG 537
Query 532 ATGAGAGAAGAAGGAGCTTTGAAGAACGTTGAAGCTATTTTTGGGATACATCTTTCCCCC 591
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 538 ATGAGAGAAGAAGGAGCGTTGAAGAACGTTGAAGCTATTTTTGGTATACATCTTTCCCCC 597
Query 592 CGGACTCCCTTTGGGAAAGCCGCTTCACGTGCAGGTTCATTTATGGCTGGAGCTGGAGTC 651
|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |
Sbjct 598 CGGACTCCCTTTGGGAAAGCTGCTTCACTTGCAGGTTCATTTATGGCTGGAGCTGGAG-C 656
Query 652 -TTCGAGGCTGTAATCACTGGGAAAGGAGGTCATGCTGCCATCCCTCAGCATACAATAGA 710
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 TTTCGAGGCTGTAATCACTGGGAAAGGAGGTCATGCTGCCATCCCTCAGCATACAATAGA 716
Query 711 TCCTGTTGTTGCAGCTTCAAGCATCGTCATCAGTCTTCAACAAC-TGGTTTCACGTGAAA 769
|||||||||||||||||||||||| ||| |||||||||||| || |||||||||||||||
Sbjct 717 TCCTGTTGTTGCAGCTTCAAGCATTGTCCTCAGTCTTCAAC-ACTTGGTTTCACGTGAAA 775
Query 770 CTGACCCTTTGGATTCAAAGGTGGTCACAGTTTCTAAGGTTAATGGAGGCAACGCGTTCA 829
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 776 CTGACCCTTCGGATTCAAAGGTGGTCACAGTTACTAAGGTTAATGGAGGCAACGCGTTCA 835
Query 830 ATGTCATCCCTGATTCAATCACCATAGGAGGAACTCTTCGAGCCTTTACCGGGTTTACTC 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 ATGTCATCCCTGATTCAATCACCATAGGAGGAACTCTTCGAGCCTTTACCGGGTTTACTC 895
Query 890 AGCTTCAGCAGAGAATCAAAGAGATTATTACCAAGCAAGCAGCCGTTCACCGATGCAACG 949
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 896 AGCTTCAGGAGAGAATCAAAGAGATTATTACAAAGCAAGCAGCCGTTCACCGATGCAATG 955
Query 950 CGTCCGTGAATCTAACACCCAAGGGTAGAG-AACCGATGCCACCAACAGTGAACAACATG 1008
|||||||||||||| ||||||| |||| | |||||||||||||||| ||||||||||||
Sbjct 956 CGTCCGTGAATCTAGCACCCAATGGTA-ACCAACCGATGCCACCAACTGTGAACAACATG 1014
Query 1009 GACTTGTACAAGCAATTCAAGAAGGTGGTTAGAGATTTGTTGGGTCAAGAAGCTTTTGTG 1068
||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1015 GACTTATACAAGAAATTCAAGAAGGTGGTTAGGGATTTGTTGGGTCAAGAAGCTTTTGTG 1074
Query 1069 GAAGCAGCGCCTGAAATGGGATCCGAGGACTTCTCATACTTTGCAGAAACAATCCCGGGC 1128
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 GAAGCAGTGCCTGAAATGGGATCCGAGGACTTCTCATACTTTGCAGAAACAATCCCGGGC 1134
Query 1129 CATTTCTCCCTGCT-GGGAATGCAAGATGAGACC-AACGCTTATGCATCGTCTCATTCAC 1186
||||||||||| || ||||||||||||||||||| || | |||||| |||||||||||||
Sbjct 1135 CATTTCTCCCT-CTTGGGAATGCAAGATGAGACCCAAGG-TTATGCGTCGTCTCATTCAC 1192
Query 1187 CACTCTATAGAATCAACGAGGATGTGCTTCCTTACGGAGCTGCTATCCATGCAACGATGG 1246
||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1193 CACACTATAGAATCAACGAGGATGTTCTTCCTTACGGAGCTGCTATCCATGCAACGATGG 1252
Query 1247 CAGTACAGTACCTCAAAGAGAAAGCTTCTAAAGGTTCTGTCTCAGGCTCTCATGACGAAC 1306
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||
Sbjct 1253 CAGTACAGTACCTCAAAGATAAGGCTTCTAAAGGTTCTGTCTCAGGCTTTCATGACGAAC 1312
Query 1307 TATAAACCTTGTCAACCTTGGTTTTAGACAGGTTCCTCATCGGTTATTGATTCGAATTCA 1366
| ||| || ||||||||||||| | ||| |||||||||||| |||| ||||||||||
Sbjct 1313 TCTAATCCCTGTCAACCTTGGT---A--CAGTTTCCTCATCGGTCATTGGTTCGAATTCA 1367
Query 1367 GAAGTACGAAGTTAACACTCCATAGA--ATA-A-T---ATGTTA--TCG-TACAAAATCC 1416
||||||| || || ||||||||| | ||| | | || ||| | | | |||| ||
Sbjct 1368 GAAGTACCAAATTTACACTCCATTGTTGATAGAATTCCAT-TTAAAT-GATG-AAAAGCC 1424
Query 1417 CAATTAAAT-GATGAAAATCCAATTTCAATTGGCAAATTCACAACATTTATGATACGTTT 1475
|||| | | | | || | |||||||||||| |||||| |||| ||||||||| ||||
Sbjct 1425 ---TTAATTCG-T-AGAA-C-AATTTCAATTGGGAAATTCTCAACTTTTATGATATGTTT 1477
Query 1476 GTGTAACA-TA---T--TGGCAGAATCTTAGAACATGAAT 1509
||||||| || | ||||| |||||||||||||||||
Sbjct 1478 GTGTAACTGTAACATACTGGCATAATCTTAGAACATGAAT 1517
> AT5G56660.1 | Symbols: ILL2 | IAA-leucine resistant (ILR)-like
2 | chr5:22933267-22935316 FORWARD LENGTH=1636
Length=1636
Score = 2006 bits (1086), Expect = 0.0
Identities = 1386/1524 (91%), Gaps = 47/1524 (3%)
Strand=Plus/Plus
Query 18 TTTAACTTTCCAACTACTCC---TTCTACTTCGTGTTTCATCGGAATCTTCATGGATCGC 74
||| |||||||||||||||| |||||||| ||||||||||||||||| ||||||||||
Sbjct 35 TTTGACTTTCCAACTACTCCTTTTTCTACTTAGTGTTTCATCGGAATCTCCATGGATCGC 94
Query 75 CGGCGATGTGTCTCAAATCCAGAAGAACCTCCTTGAA-TCTGCGAAGAGTCCAGATGTCT 133
|| ||| |||||||||||||| ||| ||||| ||| || ||||||||||| || ||||
Sbjct 95 CGAAGATACGTCTCAAATCCAGACGAAGCTCCTCGAATTC-GCGAAGAGTCCGGAGGTCT 153
Query 134 TCGATTGGATGGTGAGAATCAGAAGGAAAATCCACGAGAATCCTGAGCTTGGTTACGAAG 193
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 154 TCGATTGGATGGTGAAAATCAGAAGGAAAATCCACGAGAATCCGGAGCTTGGTTACGAAG 213
Query 194 AATTCGAGACCAGCAAGCTCATTAGGTCGGAGCTTGACCTTCTCGGAATCAAGTATAGGT 253
|| |||||||||| || ||||||||||||||||| || ||| ||||||||||||||||||
Sbjct 214 AACTCGAGACCAGTAAACTCATTAGGTCGGAGCTGGAACTTATCGGAATCAAGTATAGGT 273
Query 254 ATCCAGTAGCTATCACCGGTATTATCGGATATATCGGCACCGGAGAACCACCATTCGTCG 313
|||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 274 ATCCTGTAGCTATCACCGGTGTTATCGGATATATCGGCACCGGAGAACCGCCATTCGTCG 333
Query 314 CCCTGAGAGCTGATATGGATGCTTTGCCTATTCAGGAAGCTGTTGAGTGGGAGCACAAGA 373
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 334 CCCTGAGAGCTGATATGGATGCTTTGCCTATTCAGGAAGGTGTTGAGTGGGAGCACAAGA 393
Query 374 GCAAAATCCCTGGTAAAATGCATGCTTGTGGACATGATGGTCATGTTGCTATGCTTCTTG 433
|||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 394 GCAAAATCGCTGGTAAAATGCATGCTTGCGGACATGATGGTCATGTTACTATGCTTCTTG 453
Query 434 GTGCTGCAAAGATACTTCAAGAGCATCGCCACGATTTGCAGGGAACTGTGGTGCTTATCT 493
| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||
Sbjct 454 GGGCTGCAAAGATACTTCATGAACATCGCCACCATTTGCAGGGAACTGTGGTGCTTATCT 513
Query 494 TTCAGCCAGCTGAGGAAGGTTTGAGCGGAGCAAAGATGATGAGAGAAGAAGGAGCTTTGA 553
|||| |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||
Sbjct 514 TTCAACCAGCTGAGGAAGGTTTGAGTGGAGCAAAGAAGATGAGAGAAGAAGGAGCGTTGA 573
Query 554 AGAACGTTGAAGCTATTTTTGGGATACATCTTTCCCCCCGGACTCCCTTTGGGAAAGCCG 613
||||||| ||||||||||| |||||||||||||| |||||| |||||||||||||||||
Sbjct 574 AGAACGTCGAAGCTATTTTCGGGATACATCTTTCTGCCCGGATTCCCTTTGGGAAAGCCG 633
Query 614 CTTCACGTGCAGGTTCATTTATGGCTGGAGCTGGAGTCTTCGAGGCTGTAATCACTGGGA 673
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 634 CTTCACGTGCAGGTTCATTTTTGGCTGGAGCTGGAGTCTTCGAGGCTGTAATCACTGGGA 693
Query 674 AAGGAGGTCATGCTGCCATCCCTCAGCATACAATAGATCCTGTTGTTGCAGCTTCAAGCA 733
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 694 AAGGAGGTCATGCTGCCATCCCTCAGCATACTATAGATCCTGTTGTTGCAGCCTCAAGCA 753
Query 734 TCGTCATCAGTCTTCAACAACTGGTTTCACGTGAAACTGACCCTTTGGATTCAAAGGTGG 793
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 754 TCGTCCTCAGTCTTCAACAATTGGTTTCACGTGAAACTGACCCTTTGGATTCAAAGGTGG 813
Query 794 TCACAGTTTCTAAGGTTAATGGAGGCAACGCGTTCAATGTCATCCCTGATTCAATCACCA 853
|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 814 TCACAGTTTCTAAGGTTAATGGAGGCAATGCTTTTAATGTCATCCCTGATTCAATCACCA 873
Query 854 TAGGAGGAACTCTTCGAGCCTTTACCGGGTTTACTCAGCTTCAGCAGAGAATCAAAGAGA 913
|||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||
Sbjct 874 TAGGAGGAACTCTTCGAGCCTTTACCGGATTTACTCAGCTTCAACAGAGAGTCAAAGAGG 933
Query 914 TTATTACCAAGCAAGCAGCCGTTCACCGATGCAACGCGTCCGTGAATCTAACACCCAAGG 973
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |
Sbjct 934 TGATTACCAAGCAAGCAGCCGTTCACCGATGCAATGCGTCCGTTAATCTAACACCAAACG 993
Query 974 GTAGAGAACCGATGCCACCAACAGTGAACAACATGGACTTGTACAAGCAATTCAAGAAGG 1033
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 994 GTAGAGAACCAATGCCACCAACAGTGAACAACAAGGACTTGTACAAGCAATTCAAGAAGG 1053
Query 1034 TGGTTAGAGATTTGTTGGGTCAAGAAGCTTTTGTGGAAGCAGCGCCTGAAATGGGATCCG 1093
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1054 TGGTTAGAGATTTGTTGGGTCAAGAAGCTTTTGTGGAAGCAGCACCTGTAATGGGATCCG 1113
Query 1094 AGGACTTCTCATACTTTGCAGAAACAATCCCGGGCCATTTCTCCCTGCTGGGAATGCAAG 1153
| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1114 AAGACTTCTCATACTTTGCAGAAACAATCCCGGGCCATTTCTCTCTACTGGGAATGCAAG 1173
Query 1154 ATGAGACCAACGCTTATGCATCGTCTCATTCACCACTCTATAGAATCAACGAGGATGTGC 1213
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 ATGAGACCAACGGGTATGCATCGTCTCATTCACCACTCTATAGAATCAACGAGGATGTGC 1233
Query 1214 TTCCTTACGGAGCTGCTATCCATGCAACGATGGCAGTACAGTACCTCAAAGAGAAAGCTT 1273
|||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1234 TTCCGTACGGTGCTGCAATCCATGCATCGATGGCAGTACAGTACCTCAAAGAGAAGGCTT 1293
Query 1274 CTAAAGGTTCTGTCTCAGGCTCTCATGACGAACTATAAACCTTGTCAACCTTGGTTTTAG 1333
||||||||||||||||||||| |||||| ||||| ||||||||| ||| | ||
Sbjct 1294 CTAAAGGTTCTGTCTCAGGCTTTCATGAAGAACTCTAAACCTTGG-----TTG-T---AG 1344
Query 1334 ACAGGTTCCTCATCGGTTATTGATTC-GAATTCAGAAGTACGAAGTTAACACTCCATAGA 1392
||||||| ||||||||||||| ||| || |||||||| || || ||||||||||| ||
Sbjct 1345 ACAGGTTGTTCATCGGTTATTGGTTCAGA-TTCAGAAGCACAAACCTAACACTCCATTGA 1403
Query 1393 AT-AAT-A--TGTTATCGTACAAAATCC---CAA-T-T-A-A-A-TGATGAAAATC---- 1435
|| ||| | ||||||||||||| |||| ||| | | | | | ||||||||||
Sbjct 1404 ATTAATCAAGTGTTATCGTACAAGATCCTTGCAAGTGTTATAGAATGATGAAAATGTATT 1463
Query 1436 ------C-AATTT-CAATTGGCAAATTCA-CAACATTTATGATACGTTTGTGTAACA-TA 1485
| ||||| ||||||||||||| | |||| |||| ||| || ||||||| | ||
Sbjct 1464 TAATAGCTAATTTTCAATTGGCAAATT-ATCAACTTTTA--ATA-GTCTGTGTAAAAGTA 1519
Query 1486 TTGGCAGAATCTTAGAACATGAAT 1509
||| ||||| ||||||||| ||||
Sbjct 1520 TTGACAGAAACTTAGAACACGAAT 1543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74447408235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5