BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495776
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56860.1 | Symbols: GNC, GATA21 | GATA type zinc finger tran... 2327 0.0
> AT5G56860.1 | Symbols: GNC, GATA21 | GATA type zinc finger transcription
factor family protein | chr5:22989265-22991467 REVERSE
LENGTH=1678
Length=1678
Score = 2327 bits (1260), Expect = 0.0
Identities = 1457/1549 (94%), Gaps = 25/1549 (2%)
Strand=Plus/Plus
Query 1 AAAAAGGATCAAACATAGTATAGCTTGGACTCTTTTTGCCGTCTATGatctctctcaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAGGATCAAACATAGTATAGCTTGGACTCTTTTTGCCGTCTATGATCTCTCTCAATC 60
Query 61 tctcatcttagctatc--t-t-tctctcgttgtgtcttcatttctttatctcatcaATGG 116
||||||||||||| || | | |||||| |||||||||||||| ||||||||||||||||
Sbjct 61 TCTCATCTTAGCTTTCTTTCTCTCTCTCTTTGTGTCTTCATTTGTTTATCTCATCAATGG 120
Query 117 ATTCGAATTTTCATTACTCTATAGATCTTAACGAAGATCAAAACCATCACGAACAGCCCT 176
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 121 ATTCAAATTTTCATTACTCGATAGATCTTAACGAAGATCAAAACCATCACGAACAACCCT 180
Query 177 TTTTCTATCCTCTTGGATCCtc-t--tcg--tc-tc-t--tcttcatcatcatcatcatc 227
|||||||||||||||||||||| | ||| || || | || |||||||||||||||||
Sbjct 181 TTTTCTATCCTCTTGGATCCTCTTCCTCGCTTCATCATCATCATCATCATCATCATCATC 240
Query 228 aagtcccttctaattcttcatcttcttcttcgtccatttcgtctctttcctcttacctcc 287
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 241 AAGTCCCTTCTAATTCTTCATCTTCTTCTTCGTCCATTTCATCGCTCTCCTCTTACCTCC 300
Query 288 ctttcttGATCAACTCTCAAGAAGATCAACATGTTGCCTACAACAATACTTATCATGCTG 347
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 301 CTTTCTTGATCAACTCTCAAGAAGATCAACATGTTGCCTACAACAACACTTATCACGCTG 360
Query 348 ATCATCTCCATCTTTCTCAACCCCTCAAGGCTAAGATGTTTCTGGCT-ACTGGTGGATCA 406
||||||||||||||||||||||||||||||| ||||||||| ||||| || |||||||||
Sbjct 361 ATCATCTCCATCTTTCTCAACCCCTCAAGGCCAAGATGTTTGTGGCTAAC-GGTGGATCA 419
Query 407 TCATCATGCGATCACATGGTGCCAAAGAAGGAGACAAGACTGAAACTAACGATAAGGAAA 466
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCAGCATGCGATCACATGGTGCCAAAGAAGGAGACAAGACTGAAACTAACGATAAGGAAA 479
Query 467 AAAGATCACGAAGACCAAACCCATCCTCTTCATCAAAACCCGACAAAACCCGATTCAGAC 526
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAAGATCACGAAGACCAACCCCATCCTCTTCATCAAAACCCGACAAAACCCGATTCAGAC 539
Query 527 TCCGACAAGTGGTTGATGTCCCCAAAGATGCGGTTGATCAAGAAAACAATCACCAACAAT 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCCGACAAGTGGTTGATGTCCCCAAAGATGCGGTTGATCAAGAAAACAATCACCAACAAT 599
Query 587 AAACAGCTCATTGATCAGAGTAATAATAATAATCATAAAGAAAGTGATCACTACCCTTTG 646
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AAACAGCTCATTGATCAGACTAATAATAATAATCATAAAGAAAGTGATCACTACCCTTTG 659
Query 647 AATCATAAGACTAATTTTGACGAAGATCACGATGAAGATCTCAATTTCAAGAAAGTCTTG 706
||||||||||||||||| ||||| |||||| |||||||||| ||||||||||| ||||||
Sbjct 660 AATCATAAGACTAATTTCGACGAGGATCACCATGAAGATCTTAATTTCAAGAACGTCTTG 719
Query 707 ACCAGGACGACCACGGCCGCGACCACCGAAAATCGCTACAATACAATCAACGAGAATGGT 766
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 720 ACCAGGAAGACCACGGCCGCGACCACCGAGAATCGCTACAATACAATCAACGAGAACGGT 779
Query 767 TATGGTAATAACAATGGCGTGATTAGGGTTTGCTCGGATTGCAACACCACCAAGACTCCT 826
||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 780 TATAGTAATAACAATGGCGTGATTAGGGTTTGTTCGGATTGTAACACCACCAAGACTCCT 839
Query 827 CTTTGGCGAAGTGGACCTCGAGGTCCCAAGTCTCTTTGTAACGCATGTGGCATAAGGCAA 886
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 840 CTTTGGCGAAGTGGACCTCGAGGTCCCAAGTCTCTTTGTAACGCATGTGGTATACGGCAA 899
Query 887 AGAAAGGCGAGGCGAGCCGCTATGGCCGCGGCCGCAGCTGCCGGCGACCAAGAGGTGGTG 946
|||||||| |||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 900 AGAAAGGCAAGGCGAGCCGCTATGGCCGCGGCCGCTGCAGCCGGCGACCAAGAGGTGGCG 959
Query 947 GTAGCGTCCCGA-TCGCCACAATTACTGCTGAAAAAGAAGTTGCAAAACAAGAAAAAGAG 1005
|||||| ||||| | || |||||||| ||||||||||||||||||||| || ||||||||
Sbjct 960 GTAGCGCCCCGAGT-GCAACAATTACCGCTGAAAAAGAAGTTGCAAAATAAAAAAAAGAG 1018
Query 1006 ATCAAACGGAGGGGAAAAATACAATCTCTCTCCTCCGGTGGTGGCCAAGGCGAAAAAGTG 1065
|||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||||
Sbjct 1019 ATCAAACGGAGGGGAAAAATACAATCACTCTCCTCCAATGGTGGCCAAGGCCAAAAAGTG 1078
Query 1066 CAAGATCAAAGAGGAAGATGAGGTGGACATGGAGGCGGAAACGACGATTTCCAAAAATTC 1125
|||||||||||||||||| ||| ||| ||||| ||||||||| | || || | ||||
Sbjct 1079 CAAGATCAAAGAGGAAGAGGAGAAGGAAATGGAAGCGGAAACG--G-TTGCCGGAGATTC 1135
Query 1126 AGAGATCAGCAAATCAACAACCTCTTCTAATTCTTCAATTTCGTCGAACAAACTTTGCTT 1185
||||||||||||||| ||||| |||||||||||||| |||||||| |||||| |||||||
Sbjct 1136 AGAGATCAGCAAATCTACAACTTCTTCTAATTCTTCGATTTCGTCAAACAAATTTTGCTT 1195
Query 1186 CGATGATTTGACAATAATGTTGAGCAAAAGCTCAGCTTATCAACAAGTGTTCCCACAAGA 1245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CGATGATTTGACAATAATGTTGAGCAAAAGCTCAGCTTATCAACAAGTGTTCCCACAAGA 1255
Query 1246 TGAGAAGGAGGCTGCTGTTTTGCTCATGGCTCTGTCGTATGGAATGGTTCACGGTTGATC 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 TGAGAAGGAGGCTGCTGTTTTGCTCATGGCTCTGTCGTATGGAATGGTTCACGGTTGATC 1315
Query 1306 AGATAATCACATTATCCTGATTACAAGAAAGGTTTATTTTTATAGTTATATATAGACTAT 1365
|||| |||||| |||||| ||||||| ||||||||||||| ||||| ||||||||| |||
Sbjct 1316 AGATCATCACAATATCCTCATTACAA-AAAGGTTTATTTTAATAGTAATATATAGATTAT 1374
Query 1366 AGTAATCATAATAATGATTGATTGTTAAATCTTGGAGTGATTAATTTAGTTTTTGCAGTT 1425
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1375 AGTAATCATAATAATGATTGATTGTTAAATCTTGGAGTGATTAGTTTAGTTTTTGCAGTT 1434
Query 1426 GGTCTAATATCAGGAGTCAGAAAAACATTTTTATAATAAGATTGTGTGAGAGTTTAATAT 1485
||||||||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||
Sbjct 1435 GGTCTAATATCAGGAGTCA-AAA--CATTTT-ATAATAAGAGTGTGTGAGAGTTTAATAT 1490
Query 1486 GATAATTAATAGTTCTATATATGTTTATGGAGATTTTGGTTTAGAGTTT 1534
|||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1491 GATAATTAATAGCTCTATATATGTTTATGGAGATTTTGGTTTTGAGTTT 1539
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75802822950
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5