BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495780
Length=2113
Score E
Sequences producing significant alignments: (Bits) Value
AT5G56900.2 | Symbols: | CwfJ-like family protein / zinc finge... 3114 0.0
> AT5G56900.2 | Symbols: | CwfJ-like family protein / zinc finger
(CCCH-type) family protein | chr5:23019326-23022670 REVERSE
LENGTH=2119
Length=2119
Score = 3114 bits (1686), Expect = 0.0
Identities = 2009/2152 (93%), Gaps = 73/2152 (3%)
Strand=Plus/Plus
Query 1 ATGGCGCCCAGAATTTTGCTCTGCGGAGATCCTCTTGGACGTCTCAATCAGCTCTTCAAG 60
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGCCCAGAATTTTACTCTGTGGAGATCCTCTTGGACGTCTCAATCAGCTCTTCAAG 60
Query 61 CGTGTCCAATCGGTTAGCAAATCTGCTGGTCCATTTGATGCTCTGATTTGCGTCGGCCAG 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 61 CGTGTCCAATCGGTTAGCAAATCTGCTGGTCCCTTTGATGCTCTGATTTGCGTCGGACAG 120
Query 121 TTTTTTCCCGATTCTCCGGAACTCCTAGACGAGTTTCTGGATTACGTTGAAGGTCGAACT 180
||||||||||||||||| ||| | ||||| |||||| |||||||||| ||||||||| ||
Sbjct 121 TTTTTTCCCGATTCTCCAGAAATTCTAGATGAGTTTTTGGATTACGTCGAAGGTCGAGCT 180
Query 181 CAAGTTCCGATTCCTACTTACTTCACCGGCGACTATGGCGTCGTTGCCCCCAAAATCCTA 240
||||||||||||||||||||||||||||| |||||||| ||||| || ||||||||| ||
Sbjct 181 CAAGTTCCGATTCCTACTTACTTCACCGGAGACTATGGTGTCGTCGCACCCAAAATCTTA 240
Query 241 TCGACGACTTCGAAGAAAGCTGAGAATCAAGGGTTTAAGATGGATGGACTCGAAGTTTGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCGACGACTTCGAAGAAAGCTGAGAATCAAGGGTTTAAGATGGATGGACTCGAAGTTTGC 300
Query 301 CACAATTTGTTTTGGTTAAGAGGAAGTGGGAAGTTCACTCTTCAAGGTTTGTCTGTTGCT 360
||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 301 CACAATTTGTTTTGGTTAAGAGGAAGTGGGAAGTTCAGTCTCCATGGTTTGTCTGTTGCT 360
Query 361 TACTTATCTGGTAGACAATCATCTGATAGTCAATTTGGGAAATATAGTCAAGATGATGTT 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 TACTTATCTGGTAGACAATCATCTGAGAGTCAATTTGGGAAATATAGTCAAGATGATGTT 420
Query 421 GATGCTCTTCGTGCACTTGCTGAGGAACCTGGAGTTGTTGATTTGTTCTTAACATATCCt 480
|||||||||||||||||||||||||||||||||| ||||||||| | | |
Sbjct 421 GATGCTCTTCGTGCACTTGCTGAGGAACCTGGAGGAGTTGATTTG---------T-T-C- 468
Query 481 ttttttttGTATACTAATGAATGGCCTGCGGGAGTTACAAACAGAGCTGCGGTTTCTGAT 540
| || ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 469 -------T-TA-ACTAATGAATGGCCTGCGGGAGTCACAAACAGAGCTGCGGTTTCTGAT 519
Query 541 ATTCCTGTAGGAGTTTCTGATTCCTCTTGTAGTGATTCCACTGTTTCTGAATTGGTAATG 600
|||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 520 ATTCCTGTTGGAATTTCTGATTCCTCTTGTAGTGATTCCACTGTTTCTGAGTTGGTAATG 579
Query 601 GAAGTTAAACCTCGCTATCACATTGCAGGTTCTATGGGGGTATTTTATGCCCGTGAACCT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 GAAGTTAAACCTCGCTATCACATTGCAGGTTCTATGGGGGTATTTTATGCCCGTGAACCT 639
Query 661 TACCTCAACGTTGAATCTACTCATGTAACTCGCTTTATTGGTCTTGCTCAAGTTGGAAAT 720
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 TACCTCAACGCTGAATCTACTCATGTAACTCGCTTTATTGGTCTTGCTCAAGTTGGAAAT 699
Query 721 AAAAACAAACAGAAATTTCTTCATGCGCTTTCTCCTACACCAACATCTACCATGTCACCA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 AAAAACAAACAGAAATTTCTTCATGCGCTTTCTCCTACACCAACATCTACCATGTCACCA 759
Query 781 GCAGAGCTTAGTGCAAAGCCTCCAAAAACTACACTATGGCCTTATAATTTACAAGA-GAG 839
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
Sbjct 760 GCAGAGCTTAGTGCAAAGCCTCCAAAAACTACGCTATGGCCTTATAATTTACAAGATG-G 818
Query 840 TGCTGCTGAATCGAAGAAGAGGCCAAACGACAGTGAATCTGATTCACAGTATTGGAGGTA 899
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 819 AGCTGCTGAATCGAAGAAGAGGCCAAACGATAGTGACTCTGATTCACAGTATTGGAGGTA 878
Query 900 TGATGTCTCAAAGCGGCAAAAGAATGGATCTCAAGGGGAAAAGCTCTGTTTCAAATTTGT 959
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 879 TGATGTCCCAAAGCGGCAAAAGAGTGGATCTCAAGGGGAAAAGCTCTGTTTCAAATTTGT 938
Query 960 CTGCTCAGGTTCCTGTCCTCGGGGTGAAGATTGCCATTTCCAACACAACGCTGAAGCAAG 1019
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 939 CTGCTCAGGTTCCTGTCCTCGTGGTGAAGATTGCCATTTCCAACACAACGCTGAAGCAAG 998
Query 1020 AGAACAGTGTCGTAGAGGTGTTTGTCTTGATCTTATCATCAAAGGTAAGTGTGAAAAAGG 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 AGAACAGTGTCGTAGAGGTGTTTGTCTTGATCTTATCATCAAAGGTAAGTGTGAAAAAGG 1058
Query 1080 CCCAGAGTGCAGCTACAAGCATGAGTTTCAAGATGAAAGTAGCATACAAAGAAAGCCCAG 1139
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1059 CCCAGAGTGCAGCTACAAGCATGAGTTTCAAGATGAAAGTAGCATACAAAGGAAGCCCAG 1118
Query 1140 ATCTGAGAATGCTAACAGGTCAAAAGAATGCTGGTTTTGTCTATCAAGCCCGAGTGTGGA 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 ATCTGAGAATGCTAACAGGTCAAAAGAATGCTGGTTTTGTCTATCAAGCCCGAGTGTGGA 1178
Query 1200 GTCACATTTAATCGTCAGTGTAGGGGAAAGTTTCTATTGTGCTCTACCCAAAGGTTCACT 1259
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1179 GTCACATTTAATCGTCAGTGTAGGGGAAAGTTTTTATTGTGCTCTACCCAAAGGTTCGCT 1238
Query 1260 AGTCGAAGACCACATATTGATAATCCCAATCGAACATTTGCCCAATACTCTGGTTTTATC 1319
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1239 AGTCGAAGATCACATATTGATAATCCCAATCGAACATTTGCCCAATACTCTGGTTTTATC 1298
Query 1320 CCCTGAGGTTGAATCAGAGCTCAGTAGATACCAAAATGGTCTGAGAAATTGTTATAACAG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1299 CCCTGAGGTTGAATCAGAGCTCAGTAGATACCAAAATGGTCTGAGAAATTGTTATAAGAG 1358
Query 1380 CCAAGGAAATGATGCAGTTTTCTTTGAATTGGTCTCTAAACGTGTTTCTCATGCTAACCT 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 CCAAGGAAATGATGCAGTTTTCTTTGAATTGGTCTCTAAACGTGTTTCTCATGCTAACCT 1418
Query 1440 CCAAGTTGTTCCGGTTCCATCATCCAGAGCTCGTCTTCTTCCTAATATCTTTAGTCTGGC 1499
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 CCAAGTTGTTCCTGTTCCATCATCCAGAGCTCGTCTTCTTCCTAATATCTTTAGTCTGGC 1478
Query 1500 GGCTGAAAAACTGGGCTTTAAGCTTGTGACGAAAAAGTTTAGTGATAGTTCTGATGGCAG 1559
|||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||
Sbjct 1479 GGCTGAAAAACTGGGCTTTAAGCTTGTGACTAAAAAGTTTAATGATAGTACTGATGGCAG 1538
Query 1560 AAAGTATCTGCAGAAGGAATACAATGCAGCTTTGGGGCTCTTCTATGTGGAACTTCCTGA 1619
||| ||||||||||||||||| ||||| || ||||| |||||||||||||||||||||||
Sbjct 1539 AAAATATCTGCAGAAGGAATATAATGCGGCATTGGGTCTCTTCTATGTGGAACTTCCTGA 1598
Query 1620 TGGAACGGTGTTATCTCACACCCTGGAAGAGAACGAAGTATTCCCTGCACAATTTGGACG 1679
|||||| ||| |||| |||||| ||||||| ||||||||||||||||| || ||||||||
Sbjct 1599 TGGAACTGTGCTATCACACACCTTGGAAGAAAACGAAGTATTCCCTGCGCAGTTTGGACG 1658
Query 1680 GGAGGTTCTAGCAGGGTTGCTAAAGATCCCAGATAGGGCCGATTGGAGAAACTGTAAAAT 1739
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 GGAGGTTCTAGCAGGGTTGCTAAAGATCCCAGATAGGGCCGATTGGAGAAACTGTAAAAT 1718
Query 1740 TAGCCAAGAAGAGGAGGCAAAGCTGGCTGAAGATTTCAAGAAACAATTTCAAGAATTTGA 1799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1719 TAGCCAAGAAGAGGAGGCAAAGCTGGCTGAAGATTTCAAGAAACAATTTCAAGAATTTGA 1778
Query 1800 CCCTTGCCAATAACCTTACTGAACAAAAGATACGATCATATACTATCTTGTGGGTATCAA 1859
|||||||||||||||||||||||||||||||||||| | || |||||||||||| |||||
Sbjct 1779 CCCTTGCCAATAACCTTACTGAACAAAAGATACGATTAGATGCTATCTTGTGGGCATCAA 1838
Query 1860 TCATATGCTAAACTCAGTGTCCAGTACACTCAGGTATTGTGTTTCTGAAGCTGAATCATG 1919
|||| |||||||||||| |||||| ||||||||| | ||||||||||||||
Sbjct 1839 TCAT--GCTAAACTCAGTCTCCAGTGCACTCAGGT---------CAGAAGCTGAATCATG 1887
Query 1920 CGACA-CATCGTCCTTTAGAAATAGGTT---CA----TG------GT-----CAGTTAAA 1960
||| | ||||||| |||||||||||||| || || || ||||||||
Sbjct 1888 CGA-AGCATCGTCGTTTAGAAATAGGTTTGTCAACAGTGTTCTTTGTTTGGTCAGTTAAA 1946
Query 1961 AGCTAACAGTCTTCCATCTGTTACCTTACTATTTT--T------------C-T-T-TT-T 2002
|||||||||||||||||| ||| |||||||||||| | | | | || |
Sbjct 1947 AGCTAACAGTCTTCCATCAGTTTCCTTACTATTTTACTGGTTAGTTGTTACCTATCTTGT 2006
Query 2003 -CTTCTAGTAAACACTTGCTTTGATATATTATTGTTTGTTGAGATGTAAGAGAGTGATCA 2061
|||||| |||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2007 TCTTCTATTAAACATTTTTTTTGATATATTATTGTTTGTTGAGATGTAAGAGAGTGATCA 2066
Query 2062 TCACAGAAACACAAAACAGTCATGGTAGAATTTGCTTCACCTGTTTTCACCT 2113
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2067 TCACAGAAACACACAACAGTCATGGTAGAATTTGCTTCACCTGTTTTCACCT 2118
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104768537415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5