BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495793
Length=1620
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57020.1 | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-m... 2416 0.0
AT2G44170.1 | Symbols: NMT2, ATNMT2 | pseudogene, myristoyl-CoA... 1138 0.0
> AT5G57020.1 | Symbols: NMT1, ATNMT1 | myristoyl-CoA:protein N-myristoyltransferase
| chr5:23074867-23076901 FORWARD LENGTH=1720
Length=1720
Score = 2416 bits (1308), Expect = 0.0
Identities = 1537/1644 (93%), Gaps = 30/1644 (2%)
Strand=Plus/Plus
Query 1 CATTACTTCACACATCACGCCCTTCGTCTTTTTCCTTATTCTTTCTCCTCTGAGAAGAGT 60
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 71 CATTACTTCACACATGACGCCCTTCGTCTTTTTCCTTATTCTTTCTCCTCTCAGAAGAGT 130
Query 61 TTGCTTGTTCTGGAACCCTAAATCTCGAATCTGGAAACTCGAATCCTATAAATCTTTCCA 120
|| ||||||||||||||||||||||||||||||| |||||| |||| ||||||| |||||
Sbjct 131 TTACTTGTTCTGGAACCCTAAATCTCGAATCTGGTAACTCGGATCCGATAAATCGTTCCA 190
Query 121 GAGATCTGTTACTTGTCTCTTCAAGGATCTGTAATCGGTGCGA-GAACTTAGCTGTTTAA 179
|||||||||||||| ||| ||||||||||||| |||||||||| || | || | | ||
Sbjct 191 GAGATCTGTTACTTCTCTATTCAAGGATCTGTTATCGGTGCGAGGATC-TA-CGGATT-- 246
Query 180 GTT-T-TTTG-TAATTGTAGGAAATGGCAGATAACAATTCACCACCTGGCTCTGTCGAGG 236
|| | || | || | |||||||||||||||||||||||||||||||||||| ||
Sbjct 247 CTTCTGTTCGCGCATAATCGGAAATGGCAGATAACAATTCACCACCTGGCTCTGTAGAAC 306
Query 237 AGAAAGCAGATCAAATTGTTGAAGCTAACCCTTTGGTGAAGGATGATACTTCACTGGAAA 296
|||||||||||||||||||||||||||| || |||||||||||||||||||| |||||||
Sbjct 307 AGAAAGCAGATCAAATTGTTGAAGCTAATCCATTGGTGAAGGATGATACTTCGCTGGAAA 366
Query 297 CCATAGTTCGGAGGTTTCAGGATTCAATGTCAGAGGCAAAGACCCATAAGTTCTGGGAGA 356
|||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 367 CCATAGTTCGAAGGTTCCAGGATTCAATGTCAGAGGCAAAGACTCATAAGTTCTGGGAGA 426
Query 357 CTCAACCTGTTGGGCAGTTTAAGGATATCGGCGACACTAGTTTGCCTGAAGGCCCGATTG 416
|||||||||||||||||||||||||||| || || || |||||||||||||| |||||||
Sbjct 427 CTCAACCTGTTGGGCAGTTTAAGGATATTGGGGATACGAGTTTGCCTGAAGGTCCGATTG 486
Query 417 AGCCTGCAACTCCGTTATCTGAGGTCAAGCAAGAGCCGTACAACCTTCCTTCTGTTTACG 476
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 487 AGCCTGCAACTCCATTATCTGAGGTTAAGCAAGAGCCGTACAACCTTCCTTCTGTTTACG 546
Query 477 AATGGACCACATGCGATATGAACTCTGATGATATGTGTTCAGAGGTATACAACCTTCTCA 536
| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 547 AGTGGACGACATGTGATATGAACTCTGATGATATGTGTTCAGAGGTATACAACCTTCTCA 606
Query 537 AGAACAACTATGTTGAGGATGACGAGAATATGTTCAGGTTCAATTACTCCAAGGAGTTTC 596
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 607 AGAACAACTATGTTGAGGATGATGAGAATATGTTCAGGTTCAATTACTCCAAGGAGTTTC 666
Query 597 TTAGGTGGGCACTGCGTCCTCCTGGTTATTACCAGAGCTGGCATATTGGAGTACGTGCCA 656
| ||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||||
Sbjct 667 TAAGGTGGGCACTACGTCCACCGGGTTATTACCAGAGCTGGCATATTGGAGTTCGAGCCA 726
Query 657 AGACCTCGAAGAAACTTGTTGCTTTCATCAGTGGTGTGCCAGCAAGAATCAGGGTGCGTG 716
|||| ||||||||||| |||||||||||||| || |||||||||||||||||||||||||
Sbjct 727 AGACTTCGAAGAAACTCGTTGCTTTCATCAGCGGCGTGCCAGCAAGAATCAGGGTGCGTG 786
Query 717 ATGAGGTTGTTAAAATGGCTGAGATCAATTTCTTGTGTGTTCACAAGAAGCTCAGGTCTA 776
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 787 ATGAGGTTGTTAAAATGGCAGAGATCAATTTCTTGTGTGTTCACAAGAAGCTCAGGTCTA 846
Query 777 AGAGACTTGCTCCTGTCATGATCAAGGAGGTGACTAGAAGGGTTCACTTGGAGAACATAT 836
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 AGAGGCTCGCTCCTGTCATGATCAAGGAGGTGACTAGAAGGGTTCACTTGGAGAACATAT 906
Query 837 GGCAAGCGGCTTATACTGCAGGAGTTATACTTCCTACACCAATCACCACATGCCAATACT 896
||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||
Sbjct 907 GGCAAGCAGCTTATACTGCAGGAGTTATCCTTCCTACACCAATCACCACCTGTCAATACT 966
Query 897 GGCACAGGTCATTGAACCCGAAGAAGCTAATCGATGTTGGGTTTTCAAGGCTTGGTGCGA 956
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 967 GGCACAGGTCATTGAACCCGAAGAAGCTAATTGATGTTGGGTTTTCAAGGCTTGGTGCGA 1026
Query 957 GAATGACAATGAGCAGAACCATCAAACTCTACAAGTTACCAGATGCACCGATCACTCCTG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1027 GAATGACAATGAGCAGAACCATCAAACTCTACAAGTTACCAGATGCACCGATCACTCCTG 1086
Query 1017 GATTCAGGAAAATGGAACCCCGCGATGTCCCTGCTGTTACACGGTTGCTTAGGAACTACC 1076
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1087 GATTCAGGAAAATGGAACCACGCGATGTCCCTGCTGTTACACGGTTGCTTAGGAACTACC 1146
Query 1077 TCAGCCAGTTTGGAGTTGCGACCGACTTTGATGAGAATGATGTCGAGCATTGGCTACTCC 1136
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1147 TCAGCCAGTTTGGAGTCGCGACTGACTTTGATGAGAATGATGTCGAGCATTGGCTACTCC 1206
Query 1137 CAAGAGAAGATGTTGTGGACAGTTACCTAGTAGAAAGCCCTGAAACTCACGATGTCACTG 1196
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1207 CAAGAGAAGATGTCGTGGACAGTTACCTAGTAGAAAGCCCTGAAACTCACGATGTCACTG 1266
Query 1197 ACTTCTGCAGCTTCTACACTCTACCTTCAACTATCCTCGGTAACCCGAACTACACAACAT 1256
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 1267 ACTTCTGCAGCTTCTACACTCTCCCTTCAACCATCCTCGGTAACCCGAACTACACTACAT 1326
Query 1257 TGAAAGCTGCTTATTCTTACTACAATGTCGCCACACAGACCTCATTTCTTCAGCTGATGA 1316
|||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1327 TGAAAGCTGCGTATTCTTACTACAATGTGGCCACACAGACCTCGTTTCTTCAGCTGATGA 1386
Query 1317 ATGATGCGCTAATCGTCTCAAAGCAAAAGGGTTTCGATGTGTTCAACGCGTTGGATGTGA 1376
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 ATGATGCGCTAATTGTCTCAAAGCAAAAGGGTTTCGATGTGTTCAACGCGTTGGATGTGA 1446
Query 1377 TGCACAATGAGAGTTTCTTGAAAGAACTGAAGTTTGGACCAGGAGATGGACAGCTTCATT 1436
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1447 TGCACAATGAGAGTTTCTTGAAAGAACTGAAGTTTGGGCCAGGAGATGGACAACTTCATT 1506
Query 1437 ACTATCTCTACAATTATCGTTTGAAAAGTGCCTTGAAGCCAGCGGAACTCGGGCTTGTGC 1496
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1507 ACTATCTCTACAATTACCGTTTGAAAAGTGCCTTGAAGCCAGCGGAACTCGGGCTTGTTC 1566
Query 1497 TCTTATAAGCTCAATAACTTGATTTGATGGTATCAACAAACTTGATATTTGTCT-TCT-- 1553
|||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||
Sbjct 1567 TCTTATAAGCTCAACAACTTGATTTGATGGTATCAACAAACTTGAAATTTGTCTCTCTTT 1626
Query 1554 -----------G----AACTATTTCTCCCATGGGTTTTACTGAA-CTGAGTTTAATTATT 1597
| ||||| ||||||||||| ||| |||||| |||||||||||||||
Sbjct 1627 TTTTTTCTTCAGTCTGAACTACTTCTCCCATGG-TTT-ACTGAAACTGAGTTTAATTATT 1684
Query 1598 T-GGCAATGCAATTTTGAATTTTG 1620
| ||||||||||||||| ||||||
Sbjct 1685 TTGGCAATGCAATTTTGGATTTTG 1708
> AT2G44170.1 | Symbols: NMT2, ATNMT2 | pseudogene, myristoyl-CoA:protein
N-myristoyltransferase (NMT), putative, similar to
N-myristoyltransferase 1 (NMT1) (Arabidopsis thaliana) GI:7339834;
contains Pfam profiles PF01233: Myristoyl-CoA:protein
N-myristoyltransferase N-terminal domain, PF02799: Myristoyl-CoA:protein
N-myristoyltransferase C-terminal domain; gene
contains a frameshift. This could be a pseudogene or a sequencing
error.; blastp match of 62% identity and 5.1e-121
P-value to GP|20804654|dbj|BAB92343.1||AP003273 putative N-myristoyl
transferase {Oryza sativa (japonica cultivar-group)}
| chr2:18265431-18267426 REVERSE LENGTH=1996
Length=1996
Score = 1138 bits (616), Expect = 0.0
Identities = 1045/1244 (84%), Gaps = 62/1244 (5%)
Strand=Plus/Plus
Query 275 AAGGATGATACTTCA-CTGGAAACCATAGTTCGG-AGGTTTCAGGATTCAATGTCAG-AG 331
||||||||||||||| ||| |||||||||| || ||| || | | || || ||| |
Sbjct 646 AAGGATGATACTTCAGGTGG-AACCATAGTT-GGAAGG-TT-A--CTGCAGTGCCAGTAT 699
Query 332 GCAAAGACCCATAAGTTCTGGGAGACTCAACCTGTTGGGCAGTTTAAGGATAT-CGGCGA 390
|||||||||||||||||||||||||||||||||||| ||||||||| ||||| | | ||
Sbjct 700 TCAAAGACCCATAAGTTCTGGGAGACTCAACCTGTTGAGCAGTTTAAAGATATCCAG-GA 758
Query 391 CACTAGTTTGCCTGAAGGCCCGATTGAGCCTGCAACTCCGTTATCTGAGGTCAAGCAAGA 450
||| ||||||||||||||||| |||||||| |||||| | | |||||||||||||||||
Sbjct 759 CACGAGTTTGCCTGAAGGCCCAATTGAGCCCGCAACTTTGGTGTCTGAGGTCAAGCAAGA 818
Query 451 GCCGTACAACCTTCCTTCTGT---TTACGAATGGACCACATGCGATATGAACTCTGATGA 507
||||||||||||| ||| || || ||||||||||| |||||||||||||||||| ||
Sbjct 819 GCCGTACAACCTT-CTT-GGTCAATT-CGAATGGACCATATGCGATATGAACTCTGACGA 875
Query 508 TATGTGTTCAGAGGTATACAACCTTCTCAA-GAACAACTATGTTGAGGATGACGAGAATA 566
|||||||| |||| | |||||| ||||||| ||| ||| | | | |||||| || |
Sbjct 876 TATGTGTTTAGAGATGTACAACTTTCTCAAGGAA-AAC-A-G-TCCTGATGAC---AACA 928
Query 567 TGTTCAGGT-TCAATTACTCCAAGGAGTTTCTTAGGTGGGCACTGCGTCCTCCTGGTTAT 625
| ||| || | | |||||||| |||| ||| |||||||||||| |||| |||||||||
Sbjct 929 -GATCAAGTAT-GAGTACTCCAAAGAGTATCTAAGGTGGGCACTGTGTCCACCTGGTTAT 986
Query 626 TACCAGAGCTGGCATATTGGAGTACGTGCCAAGACCTCGAAGAAACTTGTTGCTTTCATC 685
||||||||||||||||||||||| || | ||||||||| |||||||| |||||||||||
Sbjct 987 TACCAGAGCTGGCATATTGGAGTCCGCGTCAAGACCTCCAAGAAACTCATTGCTTTCATC 1046
Query 686 AGTGG-TGTGCCAGCAAGAATCAGGGTGCGTGATGAGGTTGTTAAAATGGCTG-AGATCA 743
|||| | |||| ||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 1047 TGTGGCAG-GCCAACAAGAATCAGGGTGCGTGATGAGGTTGTTAAAATGGC-GAAGGTCA 1104
Query 744 ATTTCTTGTGTGTTCACAAGAAGCTCAGGTCTAAGAGACTTGCTCCTGTCATGATCAAGG 803
||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1105 ATTCCTTGTGTGTTCACAAGAAGCTCAGGTCTAAGGGACTTGCTCCTCTCATGATCAAGG 1164
Query 804 AGGTGACTAGAAGGGTTCACTTGGAGAACATATGGCAAGCGGCTTATA-CTGCAGGAGT- 861
|| |||||||||||||| | ||| |||| ||||||||||||||||||| || || |||
Sbjct 1165 AGTTGACTAGAAGGGTTAAGTTGCAGAATATATGGCAAGCGGCTTATACCT-CA--AGTC 1221
Query 862 -TATACTTCCTACACCAATCACCA-CATGCCAATACTGGCACAG-GTCATTGAACCCGAA 918
||||||| ||| |||| | |||| || | | | ||||| ||| | |||||||||||
Sbjct 1222 ATATACTTTCTAGACCAGTTACCACCA-GTCGAGACTGGGTCAGAAT-GTTGAACCCGAA 1279
Query 919 GAAGCTAATCGATGTTGGGTTTTCAAGGCTTGGTG-CGAGAATGACAATGAGCAGAACCA 977
||||||||||||||||||||| |||||||| ||| | ||||||||||||||||| |||
Sbjct 1280 GAAGCTAATCGATGTTGGGTTAACAAGGCTTCGTGAC-AGAATGACAATGAGCAGGACCG 1338
Query 978 TCAAACTCTACAAGTTACCAGATGCACCGATCACTCCTGGATTCAGGAAAATGGAACCCC 1037
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |
Sbjct 1339 TCAAACTCTACAAGTTACCAGATGCACCGATCACTCCTGGATTTAGGGAAATGGAGCGAC 1398
Query 1038 GCGATGTCCCTGCTGTTACA-CGGTTGCTTAGGAACTACCTCAGCCAGTTTGGAGTTGCG 1096
| |||||||||||||||||| || ||||| ||||||||||| |||||||||| |||||||
Sbjct 1399 GTGATGTCCCTGCTGTTACAGCG-TTGCTCAGGAACTACCTTAGCCAGTTTGCAGTTGCG 1457
Query 1097 ACCGACTTTGATGAGAATGATGTCGAGCATTGGCTACTCCCAAGAGAAGATGTTGTGGAC 1156
|| ||||||||||| || |||||| |||| ||||| |||||||| ||| || |||| ||
Sbjct 1458 ACTGACTTTGATGACAACGATGTCAAGCACTGGCTTCTCCCAAGGGAAAATATTGTCTAC 1517
Query 1157 AGTTACCTAGTAGAAAGCCCTGAAACTCACGATGTCACTGACTTCTGCAGCTTCTACACT 1216
|||||| |||||| ||||||||||||||| ||||||||||||||||||||||||| || |
Sbjct 1518 AGTTACGTAGTAGTAAGCCCTGAAACTCATGATGTCACTGACTTCTGCAGCTTCTGCAAT 1577
Query 1217 CTAC-CT-TCAACTATCCTCGGTAACCCGAACTACACAACATTGAAA-GCTGCTTATTCT 1273
| | || | |||||||| |||||||| ||| ||||| || || || | ||||||| ||
Sbjct 1578 -TCCTCTAT-AACTATCCCCGGTAACCGGAAATACACGACCCTGGAATG-TGCTTATGCT 1634
Query 1274 TACTACAATGTCGCCACACAGACCTCATT-TCTTCAGCTGATGAATGATGCGCTAATCGT 1332
| || |||||| || |||| |||||| || || |||||| |||||||||| ||||| ||
Sbjct 1635 TGCTGCAATGTAGCGACACTGACCTCGTTATCC-CAGCTGGTGAATGATGCCCTAATAGT 1693
Query 1333 CTCAAAGCAAAAGGGTTTCGATGTGTTCAACGCGTTGGATGTGATGCACAATGAGAGTTT 1392
||| |||||||| |||||||||||||| | || | |||||||||||| |||||||||||
Sbjct 1694 CTCTAAGCAAAAAGGTTTCGATGTGTTTTATGCCTCGGATGTGATGCAGAATGAGAGTTT 1753
Query 1393 CTTGAAAGAACTGAAGTTTGGA-CCAGGA-GATGGACAG-CTTCATTACTATCTCTACAA 1449
||||||||| ||| |||| | ||| | | | ||||| | || ||||||||||||||
Sbjct 1754 CTTGAAAGAGTTGAGGTTTT-ATCCACTATG-TCGACAGTCG-CACTACTATCTCTACAA 1810
Query 1450 TTATCGTTTGA-AAAGTGCCTTGAAGCCAGCGGAACTCGGGCTT 1492
||| ||||||| ||| ||| ||||||||| | ||||| ||||||
Sbjct 1811 TTACCGTTTGAGAAA-TGCATTGAAGCCATCAGAACTTGGGCTT 1853
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80019668730
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5