BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495815
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57180.2 | Symbols: CIA2 | chloroplast import apparatus 2 | ... 1903 0.0
> AT5G57180.2 | Symbols: CIA2 | chloroplast import apparatus 2
| chr5:23168018-23170999 FORWARD LENGTH=1919
Length=1919
Score = 1903 bits (1030), Expect = 0.0
Identities = 1391/1552 (90%), Gaps = 77/1552 (5%)
Strand=Plus/Plus
Query 305 AAATGTCGGCTTGTATAAGCAGTGGCGGAGGAGGAGCAGCAGCATATAGTTTCGAGTTAG 364
|||||||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 374 AAATGTCGGCGTGTTTAAGCAGCGGAGGAGGAGGAGCAGCAGCATATAGTTTCGAGTTAG 433
Query 365 AAAAAGTGAAATCACCACCATCAAGC-TcaacaacaacaacaacaaGAGCTACTTCACCA 423
|||||||||||||||||||| | | | || |||||||||||||||||||||||||||||
Sbjct 434 AAAAAGTGAAATCACCACCA-CCATCATCCTCAACAACAACAACAAGAGCTACTTCACCA 492
Query 424 TCATCAACAATCTCCGAATCATCAAATTCACCACTCGCAATCTCAACGAGAAAGCCAAGA 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 TCATCAACAATCTCCGAATCATCAAATTCACCACTCGCAATCTCAACGAGAAAGCCAAGA 552
Query 484 ACTCAACGCAAAAGACCAAACCAGACTTACTACGAAGCAGCTACTCTTCTCTCAACTGCT 543
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 553 ACACAACGCAAAAGACCAAACCAGACTTACAACGAAGCAGCTACTCTTCTCTCTACTGCT 612
Query 544 TATCCAAACATCTTCTCCTCAAACTTGTCCTCTAAGCAAAAAACTCACTCTTC--C-AAT 600
||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 613 TATCCCAACATCTTCTCCTCAAACTTGTCCTCTAAGCAAAAAACTCACTCTTCATCAAAC 672
Query 601 TCTCACTTCTACGGGCCATTGCTTAGTGACAACGATGACGCTTCTGATTTGCTTCTTCCT 660
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 673 TCTCACTTCTACGGGCCATTGCTTAGTGACAACGACGACGCTTCTGATTTGCTTCTTCCT 732
Query 661 TATGAATCAATCGAAGAGCCTGATTTTCTGTTTCA-CC--CG------ACGAAATCGGAG 711
||||||||||||||||| ||||||||||||||||| || || |||||| | |||
Sbjct 733 TATGAATCAATCGAAGAACCTGATTTTCTGTTTCATCCAACGATTCAAACGAAAACAGAG 792
Query 712 TTTTTCTCCGAGCACAAGGAAGTTAATTCCGGTGGAG---GTTACGGTGGTGAAACCGAA 768
|||||||| || || ||||||||||| |||||||||| | ||||||||||||| ||||
Sbjct 793 TTTTTCTCAGACCAGAAGGAAGTTAACTCCGGTGGAGATTGCTACGGTGGTGAAATCGAA 852
Query 769 AAGTTTGATTTTTCCGACGAATTCGATGCTGAATCGATTCTTGATGAGGAGATTGAAGAA 828
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 853 AAGTTTGATTTCTCCGACGAATTCGATGCTGAATCGATTCTCGATGAGGATATTGAAGAA 912
Query 829 GGTATCGATAGTATAATGGGGACTGTGGTCGAATCGAATTCGAATT--TGAATTTGGGGG 886
|| |||||||||||||||||||||||||| ||||||||||| |||| | |||| |
Sbjct 913 GGAATCGATAGTATAATGGGGACTGTGGTGGAATCGAATTCAAATTCGGGGATTTATGAA 972
Query 887 TTTATGAATCTAGG---G-T---TC-C---GG--GAA-----TC-AATCGAATTGGTAAA 927
| || | || || | | || | || ||| || ||||| |||||||||
Sbjct 973 TCTAGGGTTCCGGGAATGATCAATCGCGGTGGAAGAAGTTCTTCTAATCGGATTGGTAAA 1032
Query 928 TTAGAACAGATGATGATGATCAATTCATGGAATCGAAGCTCTAATGGATTCAATTTTCCG 987
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1033 CTAGAACAGATGATGATGATCAATTCATGGAATCGAAGCTCTAACGGATTCAATTTCCCG 1092
Query 988 TTAGGTCTTGGATTAAGAAGCGCTCTCAGAGAGAACGATGACCCAAACTTGTGG-AGAAT 1046
||||| ||||||||| |||| ||||||||||| ||||| ||| |||| |||||| || ||
Sbjct 1093 TTAGGGCTTGGATTACGAAGTGCTCTCAGAGAAAACGACGACACAAAATTGTGGAAG-AT 1151
Query 1047 TCAAACCGTTGATTTCGAACAGATCTCGCCGCGAATTCCAACCGTCACGACGGAAACCGC 1106
||| |||||||||||||||||||||||||||||||||| ||| |||| || ||||| ||
Sbjct 1152 TCATACCGTTGATTTCGAACAGATCTCGCCGCGAATTCAAACTGTCAAAACCGAAACTGC 1211
Query 1107 AATCTCCACCGTCGACGAGGAAAAATCCGACGGTAA-AA--AGGTAATCTCCGGagagaa 1163
|||||||||||| || ||||| |||||||||||||| || ||||||||| ||||||||
Sbjct 1212 AATCTCCACCGTTGATGAGGAGAAATCCGACGGTAAGAAGGTGGTAATCTCTGGAGAGAA 1271
Query 1164 gagtaataagaagaagaagaagaagaaAATGACGGCGGCGGCGACACCATTATTGACTAC 1223
||||||||||||||||||||||||||||||||||| | || || | | ||||| |||
Sbjct 1272 GAGTAATAAGAAGAAGAAGAAGAAGAAAATGACGGTGACGACG--A-C---ATTGATTAC 1325
Query 1224 GGAATCGAAAAGCTCGGAAGATACGGAGGA-ATCGAGTCCGAAGAGAACAGGTCCATTGT 1282
|||||||||||||| ||||||||||||||| | ||||| ||||||||||||||| ||||
Sbjct 1326 GGAATCGAAAAGCTTGGAAGATACGGAGGAGA-CGAGTTTGAAGAGAACAGGTCCGTTGT 1384
Query 1283 TGAAGCTTGATTACGACGGCGTTTTGGAAGCTTGGTCTGATAAAACGTCGCCGTTTCCTG 1342
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1385 TGAAGCTTGATTACGACGGCGTTTTGGAAGCTTGGTCTGATAAAACGTCGCCGTTTCCCG 1444
Query 1343 ATGACATTCTGGGATCGGAAGCTACTGGTATCGATGTCAATGCTAGATTAGCTCAGATTG 1402
| || |||| ||||||||||| || | ||||||||||||||||||||||||||||||
Sbjct 1445 ACGAGATTCAGGGATCGGAAG---CT-G--TCGATGTCAATGCTAGATTAGCTCAGATTG 1498
Query 1403 ATTTGTTCGGAGACAGTGGAATGCGAGAAGCAAGTGTTTTGAGGTACAAAGAGAAACGTC 1462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ATTTGTTCGGAGACAGTGGAATGCGAGAAGCAAGTGTTTTGAGGTACAAAGAGAAACGTC 1558
Query 1463 GAACTCGTCTTTTTTCGAAGAAAATTCGATACCAAGTTCGCAAACTCAATGCTGATCAAC 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GAACTCGTCTTTTTTCGAAGAAAATTCGATACCAAGTTCGCAAACTCAATGCTGATCAAC 1618
Query 1523 GTCCTCGAATGAAGGGACGATTCGTGAGAAGACCCAATGAGAGTACTCCAAGTGGACAAA 1582
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1619 GTCCTCGAATGAAGGGACGATTCGTGAGAAGGCCCAATGAGAGCACTCCAAGTGGACAAA 1678
Query 1583 GATAACAAGGATAAAAGAGCCTAGAtttatcttttcttttcttttt-atgttttgtttat 1641
||||||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||
Sbjct 1679 GATAACAAGGATAAAAGAGCCTAGATTTATCTTATCTTTTTTTTTTTATCTTTTGTTTAT 1738
Query 1642 tccctt-ttttatttt-gtttctaaaattttggcacc-tcctttttttgtttCTT--AAG 1696
||| || ||||||||| |||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 1739 TCC-TTGTTTTATTTTTGTTTCTAAAATTTTGGCACCCTCCTTTTTT-GTTTCTTTTAAG 1796
Query 1697 TTATGGTCCCTTGACTCCCTTTCGTTTATAATTTTAGATTTTTT-ATGAGGG--AGATTT 1753
|||||||||||| | | ||||||||||| ||||||||| ||||||| ||||||
Sbjct 1797 TTATGGTCCCTT---T---TG--GTTTATAATTT-AGATTTTTTGATGAGGGGGAGATTT 1847
Query 1754 GATTGAGAAAATGAGGGATCAAAACAAATAAAAGTTTTTGTTATTAATAGAA 1805
|||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1848 GATTGAGAAAGTGAGGGATCAAAACTAATAAAAGTTTTTGTTATTAATAGAA 1899
Score = 350 bits (189), Expect = 4e-95
Identities = 268/302 (89%), Gaps = 21/302 (7%)
Strand=Plus/Plus
Query 1 TCACAAACCAATTGGCTTCTCTCTGTAAGAACTTCACTTGTTGGCCAATTCTTTTGG-TT 59
||||||||||||| |||||| ||||||| ||| ||||| |||||||||||||||||| ||
Sbjct 1 TCACAAACCAATTAGCTTCTTTCTGTAA-AACCTCACTCGTTGGCCAATTCTTTTGGTTT 59
Query 60 TCATAAACAAAAATCTCAGATTCCAAATGGGTTTTCTTAGCTCTTTCTTTC-AA--ATG- 115
||||| ||| ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 60 TCATACACATAAATCTCAGATTCCAAATGGGTTTTCTTAGCTCTTTCTTTCAAATGATGA 119
Query 116 --A-----T----GAA-CTTCCTCTTTCCCTAAAGTTTTGACCtttttttttCTCCTTCA 163
| | ||| |||||||||||||||||||||||| | ||||||| | ||||||
Sbjct 120 ACATTTGTTAGCAGAATCTTCCTCTTTCCCTAAAGTTTTGATC-TTTTTTTCCCCCTTCA 178
Query 164 ATTTTGTATTTTCTCACCAAATaaaaaaaGGTTTCTTCAGTGGGTTTTAAGGGTTTATTA 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ATTTTGTATTTTCTCACCAAATAAAAAAAGGTTTCTTCAGTGGGTTTTAAGGGTTTATTA 238
Query 224 TTATCTTAAAATCAAACACAATTCCTTAACCAAAAGG-AAACAATCTCAATTTCATCACT 282
|||||||||||| ||||||||||| |||| ||||||| ||| ||||| ||||||||||||
Sbjct 239 TTATCTTAAAATTAAACACAATTCTTTAATCAAAAGGCAAA-AATCTTAATTTCATCACT 297
Query 283 CT 284
||
Sbjct 298 CT 299
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89306769555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5