BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495838
Length=2196
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57380.1 | Symbols: VIN3 | Fibronectin type III domain-conta... 3182 0.0
> AT5G57380.1 | Symbols: VIN3 | Fibronectin type III domain-containing
protein | chr5:23246395-23249504 REVERSE LENGTH=2221
Length=2221
Score = 3182 bits (1723), Expect = 0.0
Identities = 2065/2226 (93%), Gaps = 39/2226 (2%)
Strand=Plus/Plus
Query 2 TCAGAGCAGAAGTTTCATCCCTTAGAGGGTTTCCT-CTTAGAAACATCTAG--aaaa-aa 57
|||||||||||||||||||| | |||||||||||| ||||||||||||||| |||| ||
Sbjct 4 TCAGAGCAGAAGTTTCATCCATCAGAGGGTTTCCTCCTTAGAAACATCTAGAAAAAACAA 63
Query 58 aa--a-a-aG-GAGAGAGAAGAACCA--C--CAGAGAAACATCTTTTCCTTTGT-AC-AA 106
|| | | || ||||||||||||||| | || |||||||||||||||||| | || ||
Sbjct 64 AAGGAGAGAGAGAGAGAGAAGAACCATCCATCACAGAAACATCTTTTCCTTTTTCACTAA 123
Query 107 ATTCCCCATTAAAGATCTCTaaactaaacctagaaagaaagaaaaaaatc-agag-aaaa 164
| ||||||| ||||||||||||| ||||||||| | ||| ||||||||| |||| ||||
Sbjct 124 A-TCCCCATAAAAGATCTCTAAAATAAACCTAG-CA-AAA-AAAAAAATCAAGAGAAAAA 179
Query 165 aaacgaagaacacgaagaacg--------aaaaaaaaTGCAAGCTGCTTCGCTCTCAAAG 216
||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 180 AAACGAAGAACACGAAGAACGACAAACAAAAAAAAAATGCAAGCTGCTTCGCTCTCAAAG 239
Query 217 ACCTGGCGTTTTGATGGAAATGTGGGTCCAGAGAACATGGATTCTTCTCCATTTCAAGAT 276
| ||||||||| ||||| |||||||||||||||||||||||||||||| | ||| |||||
Sbjct 240 ATCTGGCGTTTCGATGGTAATGTGGGTCCAGAGAACATGGATTCTTCTTCGTTTGAAGAT 299
Query 277 AATGAATGCATTGAGACTTGTAAACCAAACGATTTGAATGTAAGTGAAAGGAGAGAATTG 336
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 AATGAATGCATTGAGACTTGTAAACCAAACGTTTTGAATGTAAGTGAAAGGAGAGAATTG 359
Query 337 ATCCACGCATTGTCTACCCAGCCACAAGAAGCTTCGGAGCTTTTGAATTCATGGAGCAGA 396
|||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 ATCCACGCATTGTCTAACCAGCCTGAAGAAGCTTCGGAGCTTTTGAATTCATGGAGCAGA 419
Query 397 AATGAGATCATGAAGATCATATGTGCTGAGATGGGTAAAGAGAGGAAGTACACTGGTCTG 456
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 AATGAGATCATGAAGATCATATGTGCTGAGATGGGTAAAGAAAGGAAGTACACTGGTCTT 479
Query 457 AACAAACCAAAACTCATTGAGAATCTACTCAATCTTGTGTCTCGTCCTCTTGGAGAGACT 516
||||||||||| ||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 480 AACAAACCAAAGCTCATAGAGAATCTTCTGAATCTTGTGTCTCGTCCTCTTGGAGAGACC 539
Query 517 TCTTATTCTGACCGTAGAAACTCGAGGAAGAAGCAGAAGAAGATGATCGGTTACATCATT 576
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 TCTTGTTCTGACCGTAGAAACTCGAGGAAGAAGGAGAAGAAGATGATCGGTTACATCATT 599
Query 577 TGCTGTGAGAATTTAGCTTGTAGAGCTGCGCTTGGAAGCGATGATACTTTTTGCAGAAGG 636
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 600 TGCTGTGAGAATTTAGCTTGTAGAGCTGCGCTTGGATGCGATGATACGTTTTGCAGAAGG 659
Query 637 TGTTCTTGCTGCATTTGTCAAAAGTTTGATGATAATAAGGATCCGAGTTTATGGCTTACT 696
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 660 TGTTCTTGCTGCATCTGTCAAAAGTTTGATGATAATAAGGATCCTAGTTTATGGCTTACT 719
Query 697 TGTGAGGCTTGTGGATCGTCTTGTCATTTGGAATGTGGTTTGAAGCAAGATAGGTATGGG 756
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGTGATGCTTGTGGATCGTCTTGTCATTTGGAATGTGGTTTGAAGCAAGATAGGTATGGG 779
Query 757 ATTGGGAGTGATGATCTTGATGGTAGGTTTTATTGCGCATATTGCGGCAAAGATAATGAC 816
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 780 ATTGGGAGTGATGATCTTGATGGTAGGTTTTATTGCGCGTATTGCGGTAAAGATAATGAC 839
Query 817 TTGCTCGGATGCTGGAGGAAACAAGTGAAGGTGGCGAAAGAGACGCGGCGTGTGGATGTA 876
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTGCTCGGATGCTGGAGAAAACAAGTGAAGGTGGCGAAAGAGACGCGGCGTGTGGATGTA 899
Query 877 CTTTGTTACCGTCTTTCTTTAGGACAAAAGCTGTTGAGAGGTACAAGGCAGTATCGGAAT 936
|||||||| ||||||||||||||||| ||||||||||||||||| | | |||||||||||
Sbjct 900 CTTTGTTATCGTCTTTCTTTAGGACAGAAGCTGTTGAGAGGTACCACGAAGTATCGGAAT 959
Query 937 CTGTTGGAACTCATGGATGAGGCGGTGAAGAAGCTCGAAGGTGATGTGGGTCCGTTGTCG 996
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CTGTTGGAACTTATGGATGAGGCGGTGAAGAAGCTCGAAGGTGATGTGGGTCCGTTGTCG 1019
Query 997 GGGTGGGCAATGAAGATGGCTCGAGGTATCGTCAAAAGACTTTCGTCGGGA-TCACAAGT 1055
|| ||||| ||||||||||||||||| |||||||| |||||||| ||||| | || ||
Sbjct 1020 GGTTGGGCCATGAAGATGGCTCGAGGCATCGTCAATAGACTTTCTTCGGGTGTG-CATGT 1078
Query 1056 CCAGAAGCTGTGTTCTCAGGCAATGGAAGCTCTGGACAAAGTGGTCTCACCATCGGAATC 1115
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1079 CCAGAAGCTGTGTTCTCAGGCAATGGAAGCTCTGGACAAAGTGGTCTCACCATCAGAATC 1138
Query 1116 TGTTTCAGGACAAGGTGACAAGATGACCGTGAGAGTAGAAGAGATTCAAGCAAGATCAGT 1175
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGTTTCAGGACAAGGTGACAAGATGACCGTGAGAGTAGAAGAGATTCAAGCAAGATCAGT 1198
Query 1176 CACTGTGAGATTAGAGTCCGAGGAGCCATCTTCTTCTACACAAAACCAGATCACAGGTTT 1235
|||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 1199 CACTGTGAGAGTAGACTCCGAGGAGCCGTCTTCTTCTACACAAAACAAGATCACAGGTTT 1258
Query 1236 CAGGTTGTTTTGTCGGAAGTCGAAGGACGAAGAGTGCTCGTCTGAGGTGAACTGTGTTGC 1295
||||||||||||||| ||||||||||||||||| ||||||||| ||| ||| |||||||
Sbjct 1259 CAGGTTGTTTTGTCGAAAGTCGAAGGACGAAGAATGCTCGTCTCAGGGGAATTGTGTTGT 1318
Query 1296 GTATCTACCTGAAACAAGGTCTACCATCCAAGGACTTGAACCCGACACCGAGTTCTGTCT 1355
||||||||||| || | |||| |||||||||||||||||||||||||||||||||||||
Sbjct 1319 TTATCTACCTGAGACGACGTCTGCCATCCAAGGACTTGAACCCGACACCGAGTTCTGTCT 1378
Query 1356 CAGAGTCGTGTCCTTTAACAAGGAAGGTGACTTAGATGAGTCCGAGCTTCAGTTCTCAAC 1415
|||||| || ||||||||| |||||||||||||||||||||| ||||||| |||| ||||
Sbjct 1379 CAGAGTGGTTTCCTTTAACGAGGAAGGTGACTTAGATGAGTCTGAGCTTCGGTTCACAAC 1438
Query 1416 ATTGAAAGACAATATAGATGAAGCTCGGGACCGGCAAAGCCCTTTGACAAACTCAAGCAG 1475
||||| || || |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 1439 GTTGAAGGATGATGGAGATGAAGCTGGGGACCAGCAAAGCCCTTTGACAAACTCAAGCAG 1498
Query 1476 TGGTCTTTGTAGTAATCCATCTTTGC-ACGAAGATGAATCTAATAATGTCCATAAGAGCT 1534
|||||||||||||||||||||||| | | ||||||||||||||||||||| |||| ||||
Sbjct 1499 TGGTCTTTGTAGTAATCCATCTTTACCA-GAAGATGAATCTAATAATGTCAATAAAAGCT 1557
Query 1535 GCAGCGAAGAAAACGGTGACAAGGACAACACCGAACACTGTAATGCAGGAGAAGTAGAAT 1594
||||| ||| ||| ||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1558 GCAGCAAAGGAAATGGTGACAAGGACAACACTGAACACTGTAGTGCAGGAGAAGTAGAAT 1617
Query 1595 CCGAGCTTGAAGAGGAGAGGCTTGTAAAGAGGAAAGCTAACAAGATAGATGGAAGAGACT 1654
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1618 CTGAGCTTGAAGAAGAGAGGCTTGTAAAGAGGAAAGCAAACAAGATAGATGGAAGAGACT 1677
Query 1655 TGCTTGTAACACCCTGCAAAAGAGATATTTCTAAGGGGAAGCAAGGAGGGAATAAAAGAT 1714
||||||||||||||||||| |||||||||| ||| || ||||||||||||||||||||||
Sbjct 1678 TGCTTGTAACACCCTGCAAGAGAGATATTTATAAAGGAAAGCAAGGAGGGAATAAAAGAT 1737
Query 1715 TCAAATCAAGAACAATATCGGTGAACGAGAAACCTGAGATCAATAATGCCGCAAATGGGG 1774
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1738 TCAAATCAAGAACAGTATCCTTGAACGAGAAACCTGAGATCAATAATGCCGCAAATGGAG 1797
Query 1775 TAGGAGATAAAGACTTGGGTCAAATTGTGAAGACGATTAGATGTTTAGAGCAAGAAGGAC 1834
|||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||
Sbjct 1798 TAGGAGATAAAGACTTGGGTCATATTGTTAAGACGATTAGATGTTTAGAGGAAGAAGGAC 1857
Query 1835 ATATAGACAGGAGTTTTAGGGAAAGGTTCTTGACATGGTATAGCTTAAGAGCTACTCACC 1894
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 ATATAGACAAGAGTTTTAGGGAAAGGTTCTTGACATGGTATAGCTTAAGAGCTACTCACC 1917
Query 1895 GAGAAGTTAGAGTTGTGAAGATCTTTGTTGAGACCTTTATGGAGGATCTGTCTTCTTTGG 1954
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1918 GAGAAGTAAGAGTTGTGAAGATCTTTGTTGAGACGTTTATGGAGGATCTGTCTTCTTTGG 1977
Query 1955 GAGAACAGCTTGTGGATACATTCTCAGAATGCATAGTGAGCAAAAGATCATCAACAAGTG 2014
|| |||||||||||||||||||||||||| | ||| |||| || |||||||| |||| ||
Sbjct 1978 GACAACAGCTTGTGGATACATTCTCAGAAAGTATACTGAGTAAGAGATCATCGACAAATG 2037
Query 2015 GCGTTGTACCTGCTGGAATCTGCCTCAAGCTTTGGCATTAAA-GCTTTTGAAATCGGTCT 2073
| || ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2038 GTGTAGTACCTGCTGGGATCTGCCTCAAGCTTTGGCATTAAAAGCTTTTGAAATCGGTCT 2097
Query 2074 ATTTATTAACTTTCTTGATATTCTACACCATAACGATA-TTTTG-AAGTGAAATTATGTA 2131
||||||||||| ||||||||| || |||||||||||| ||||| || ||||||||||||
Sbjct 2098 ATTTATTAACTCGCTTGATATTGTAAACCATAACGATAATTTTGGAA-TGAAATTATGTA 2156
Query 2132 AGTACACATTTCCAATTTCTTTCTGATGTCT-AGTGAAAACCTCAAAAATGAATAGGCAT 2190
||||| |||||||||||||||||||||| || |||||||| |||||||||||||| || |
Sbjct 2157 AGTACGCATTTCCAATTTCTTTCTGATG-CTTAGTGAAAAACTCAAAAATGAATAAGCCT 2215
Query 2191 GATTTC 2196
||||||
Sbjct 2216 GATTTC 2221
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108935182650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5