BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495863 Length=1374 Score E Sequences producing significant alignments: (Bits) Value AT5G57660.1 | Symbols: ATCOL5, COL5 | CONSTANS-like 5 | chr5:23... 948 0.0 > AT5G57660.1 | Symbols: ATCOL5, COL5 | CONSTANS-like 5 | chr5:23355464-23356989 FORWARD LENGTH=1437 Length=1437 Score = 948 bits (513), Expect = 0.0 Identities = 741/840 (88%), Gaps = 59/840 (7%) Strand=Plus/Plus Query 554 GTTCTTCTGAGTTTATGTTTTCTGATTTCGATCGTCTTATTGATTTCGAGTTTCCGAATT 613 |||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 618 GTTCTTCTGACTTTATGTTTTCTGATTTCGATCGGCTTATTGATTTCGAGTTTCCGAATT 677 Query 614 CGTTCAATCATCCGTCGCATAACAACGCCGGTGGAGATAGTCTTGTTCCGGTTCAGACGA 673 ||||||||||| | | || ||||||||||| |||||||||||||||||||||||||||| Sbjct 678 CGTTCAATCAT-CAT--CAAAACAACGCCGGAGGAGATAGTCTTGTTCCGGTTCAGACGA 734 Query 674 AAACAGAGCCTCTTCCGTTAACTAACAATGATCATTGCTTCGATATAGATTTCTGCAGAT 733 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 735 AAACAGAGCCTCTCCCGTTAACTAACAATGATCATTGCTTCGATATTGATTTCTGCAGAT 794 Query 734 CAAAGCTCTCTGCTTTCACTTACCCTTCTCAATCAGTTAGCCACAGTGTTTCGACTTCGT 793 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 795 CAAAGCTCTCTGCTTTCACTTACCCTTCTCAATCAGTCAGCCACAGTGTTTCGACTTCTT 854 Query 794 CTATTGAATACGGTGTTGTTCCTGACGGAAACACAAACAACTCTGTTTCTGAAATCTCAG 853 |||||||||||||||| ||||||||||||||||| | || | || ||| Sbjct 855 CTATTGAATACGGTGTAGTTCCTGACGGAAACAC--A-AA--------C---AA-CTC-- 897 Query 854 TTCCGTTTAACCGGAGCACGATCACTACCTCGACGGCGGCGAGTACTGGTGATCATCAAA 913 | | ||||||||||||||||||||| ||||||| | | | ||||||||||||| Sbjct 898 -T--G-TTAACCGGAGCACGATCACTAGCTCGACGAC--TG-G---TGGTGATCATCAAG 947 Query 914 CGAGCTCCATGGATAGAGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGAAAGAACAGGA 973 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 948 CGAGCTCTATGGATAGAGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGAAAGAACAGGA 1007 Query 974 AATTTGAGAAGACGATTCGTTATGCTTCGAGGAAAGCTTATGCAGAGTCACGGCCAAGGA 1033 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1008 AATTTGAGAAGACGATTCGTTACGCTTCGAGGAAAGCTTATGCAGAGTCACGGCCAAGGA 1067 Query 1034 TCAAAGGCCGGTTTGCGAAAAGAACAGAGACAGAAAACGACGACGTTTTCCTTAGTCATG 1093 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1068 TCAAAGGCCGGTTTGCGAAAAGAACAGAGACAGAAAACGACGACATTTTCCTTAGTCATG 1127 Query 1094 TTTATGCTTCAGCCGC-C--GCACAGTACGGTGTCGTACCAACGTTCTGAATTCGAATCT 1150 ||||||||||||| || | |||||||||||||||||||||||||||||| ||||||||| Sbjct 1128 TTTATGCTTCAGCAGCACACGCACAGTACGGTGTCGTACCAACGTTCTGA-TTCGAATCT 1186 Query 1151 ACGGTGGATAAAGAATCAACTTGAAGACTTCCCATCTTTCACCGTCGATTTACCGTGGGT 1210 |||||||||||| ||||||| |||||||||| ||||| |||||| ||||||| || ||| Sbjct 1187 ACGGTGGATAAACAATCAACCTGAAGACTTCATATCTTCCACCGTTGATTTACAGTCGGT 1246 Query 1211 GTATAATAAGTATAGTGAGTCTTACCCTAGACAAACAT-T-A-C-t-ttt----ttt-AC 1260 |||||||||||||||||||||||||| ||||||||||| | | | | ||| ||| | Sbjct 1247 GTATAATAAGTATAGTGAGTCTTACCGTAGACAAACATCTTATCCTCTTTACCGTTTTAA 1306 Query 1261 G--CTCTCTCTC-ACTGCCACTATAAAGGC---TGTAACtttttttttttttCTTTCTCT 1314 || | | | || || || | | || ||||||| |||||||||||||| | || Sbjct 1307 TTACTTTTTTTTTAC-GCG-CTCTCACTGCCACTGTAACTCTTTTTTTTTTTCTT-C-CT 1362 Query 1315 TCTATAAATATGTATGCTTATTTTTATTTAGAAAATGTTATAAAATCATATAATTTGGTA 1374 ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1363 ---ATA--TATGTATGCTTATTTTTATTTAGAAAATGTTATGAAATCATATAATTTGGTA 1417 Score = 826 bits (447), Expect = 0.0 Identities = 528/566 (93%), Gaps = 9/566 (2%) Strand=Plus/Plus Query 1 CATCGAAGCAAATCAAATACCCAACTCTCACACGTTCTCAAACCAAAACTTC--A-A-AG 56 |||| |||||||||||||||||||||||||||||||||||||| |||||||| | | || Sbjct 1 CATCCAAGCAAATCAAATACCCAACTCTCACACGTTCTCAAACAAAAACTTCAAAGAGAG 60 Query 57 AGAGAGAGttttttttCTGAACTCAAGAAAGaaaaaaaaaaaaGAGTAGTTAATGGGATT 116 |||||||| |||| |||||||||| || || ||||||| | |||||||||||||| Sbjct 61 AGAGAGAGAGAGTTTTGTGAACTCAAG-AA-AATAAAAAAAGTTA-TAGTTAATGGGATT 117 Query 117 CGGCTTAGAGAGTATCAAATCAATCTCCGGCGGGTGGGGCGCGGCGGCGCGTTCCTGTGA 176 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 118 CGGCTTAGAGAGTATCAAATCAATCTCCGGCGGATGGGGCGCGGCGGCGCGTTCCTGTGA 177 Query 177 CGCTTGTAAATCAGTAACCGCCGCCGTGTTCTGTCGACTTGACTCAGCTTTCTTATGCAT 236 ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| Sbjct 178 CGCTTGTAAATCAGTTACCGCCGCCGTGTTCTGTCGAGTTGACTCAGCTTTCTTATGCAT 237 Query 237 ATCATGTGACACAAGAATCCATTCCTTCACTCGCCACGAGCGCGTGTGGGTTTGTGAAGT 296 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 AGCATGTGACACAAGAATCCATTCCTTCACTCGCCACGAGCGCGTGTGGGTTTGTGAAGT 297 Query 297 TTGCGAACAAGCTCCCGCCGCCGTCACTTGCAAAGCCGACGCCGCCGCTCTTTGCGTCAC 356 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 TTGTGAACAAGCTCCCGCCGCCGTCACTTGCAAAGCCGACGCCGCCGCTCTTTGCGTCAG 357 Query 357 TTGTGATTCCGATATTCACTCAGCTAATCCACTCGCTAGCCGTCACGAACGTGTCCCCGT 416 ||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 358 TTGTGATGCCGATATTCACTCTGCTAATCCTCTCGCTAGCCGTCACGAACGTGTCCCCGT 417 Query 417 AGAGTCTTTCTTCGACTCAGCTGAAACCGCCGTCGCCAAAATCTCTCCTTCTTCGAGTTT 476 || |||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| Sbjct 418 CGAAACTTTCTTCGACTCAGCCGAAACCGCCGTCGCCAAAATCTCAGCTTCTTCGACTTT 477 Query 477 TGGTATCCTTGGCTCATCCACCACCGTGGATTTAACCGCTGTTCCGGTTATGGGTGATGA 536 ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| Sbjct 478 TGGTATCCTTGGCTCATCCACCACCGTTGATTTAACCGCTGTTCCGGTTATGGCTGATGA 537 Query 537 TCTCGGTTTATGTCCGTG-TT-CTTC 560 |||||||||||||||||| || |||| Sbjct 538 TCTCGGTTTATGTCCGTGGTTACTTC 563 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67670334660 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5