BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495889
Length=509
Score E
Sequences producing significant alignments: (Bits) Value
AT5G57887.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 706 0.0
AT5G57880.1 | Symbols: MPS1, ATPRD2, PRD2 | multipolar spindle ... 448 3e-125
> AT5G57887.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23446721-23447249
FORWARD LENGTH=529
Length=529
Score = 706 bits (382), Expect = 0.0
Identities = 474/516 (92%), Gaps = 16/516 (3%)
Strand=Plus/Plus
Query 1 ACCAAATTGTTATTAAATAAGTCC-GACAGAAATAATATCTTCTTCAACTA--CTCACGT 57
||||||||||||||||||| |||| | |||||||||||||||||||||||| |||||||
Sbjct 1 ACCAAATTGTTATTAAATATGTCCTG-CAGAAATAATATCTTCTTCAACTACTCTCACGT 59
Query 58 CTTCTTTTATAAAAGCAAGCCGTAGGACTAAAACCTTATCTTATCTTAGAGCAGAGATGC 117
||||||||||||||||||||| |||||| |||||||||||||| | |||| ||||||
Sbjct 60 CTTCTTTTATAAAAGCAAGCCATAGGACGAAAACCTTATCTTA---T--AGCAAAGATGC 114
Query 118 GTGACATCAAAGGCTTACTCATCCTATCGATCATCTTACTCCTGGTCTTTTCTCAGTGCC 177
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 115 GTGACATCAAAGGCTTACTCATCCTATCGATCATCTTACTCCTGGTCTTGTCTCAGTCCC 174
Query 178 TTCTTTTGTGCTCAGGTCATGGCGATGACGAAGCTGGTGCGACAAGGAAGCTTGGAGTCT 237
|||||||||| |||||||||| |||| |||||||||||| ||||||||||||||||||||
Sbjct 175 TTCTTTTGTGTTCAGGTCATGTCGATCACGAAGCTGGTGTGACAAGGAAGCTTGGAGTCT 234
Query 238 TCATAAGGAGAAGGGCAAGAAGATCCAGAGGACATCGCCCCACATCTGCTTCCACAACAC 297
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 235 TCATAAGGAGAAGGGCAAGAAGATTCAGAGGACATCGCCCCACATCTGCTTCCATTACAC 294
Query 298 TTTTGTCAGGCTTCTTTCATATGACTGCTTGCCTTGCCACCTCT--TTCCTGCT-TTCTC 354
|||||||||||| ||| ||||||||||||||||||||||||||| ||| ||| |||||
Sbjct 295 TTTTGTCAGGCTCCTTCCATATGACTGCTTGCCTTGCCACCTCTAGTTCTTGCAGTTCTC 354
Query 355 TTCTTATCTAGGTTTCATCTACTGTCAAAAGTGGtttttctttttttACTTTCCTTACAA 414
||||| |||||||| |||||||| |||||||| ||||| |||||| |||| |||||||||
Sbjct 355 TTCTTTTCTAGGTTCCATCTACTATCAAAAGTAGTTTT-CTTTTTCTACTCTCCTTACAA 413
Query 415 GTAAT-GATGTAGTACATAGTAACACTTCTTTGTAATGCGTTTATGTAAGTTGAGTTCTA 473
| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 414 G-AATTG-TGTAGTACATAGTAACACGTCTTTGTAATGCGTTTATGTAAGTTGAGTTCTA 471
Query 474 CATAAGCATTTATGTGTACAAATTTAATGCTTGAAA 509
||||||||| ||| ||||||||||||||||||||||
Sbjct 472 CATAAGCATGTATTTGTACAAATTTAATGCTTGAAA 507
> AT5G57880.1 | Symbols: MPS1, ATPRD2, PRD2 | multipolar spindle
1 | chr5:23443977-23447244 FORWARD LENGTH=1504
Length=1504
Score = 448 bits (242), Expect = 3e-125
Identities = 298/324 (92%), Gaps = 7/324 (2%)
Strand=Plus/Plus
Query 190 CAGGTCATGGCGATGACGAAGCTGGTGCGACAAGGAAGCTTGGAGTCTTCATAAGGAGAA 249
||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1167 CAGGTCATGTCGATCACGAAGCTGGTGTGACAAGGAAGCTTGGAGTCTTCATAAGGAGAA 1226
Query 250 GGGCAAGAAGATCCAGAGGACATCGCCCCACATCTGCTTCCACAACACTTTTGTCAGGCT 309
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1227 GGGCAAGAAGATTCAGAGGACATCGCCCCACATCTGCTTCCATTACACTTTTGTCAGGCT 1286
Query 310 TCTTTCATATGACTGCTTGCCTTGCCACCTCT--TTCCTGCT-TTCTCTTCTTATCTAGG 366
||| ||||||||||||||||||||||||||| ||| ||| |||||||||| ||||||
Sbjct 1287 CCTTCCATATGACTGCTTGCCTTGCCACCTCTAGTTCTTGCAGTTCTCTTCTTTTCTAGG 1346
Query 367 TTTCATCTACTGTCAAAAGTGGtttttctttttttACTTTCCTTACAAGTAAT-GATGTA 425
|| |||||||| |||||||| ||||| |||||| |||| |||||||||| ||| | ||||
Sbjct 1347 TTCCATCTACTATCAAAAGTAGTTTT-CTTTTTCTACTCTCCTTACAAG-AATTG-TGTA 1403
Query 426 GTACATAGTAACACTTCTTTGTAATGCGTTTATGTAAGTTGAGTTCTACATAAGCATTTA 485
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1404 GTACATAGTAACACGTCTTTGTAATGCGTTTATGTAAGTTGAGTTCTACATAAGCATGTA 1463
Query 486 TGTGTACAAATTTAATGCTTGAAA 509
| ||||||||||||||||||||||
Sbjct 1464 TTTGTACAAATTTAATGCTTGAAA 1487
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24313327148
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5