BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495939
Length=1523
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58290.1 | Symbols: RPT3 | regulatory particle triple-A ATPa... 2420 0.0
AT4G27680.1 | Symbols: | P-loop containing nucleoside triphosp... 93.5 6e-18
> AT5G58290.1 | Symbols: RPT3 | regulatory particle triple-A ATPase
3 | chr5:23569062-23571340 FORWARD LENGTH=1544
Length=1544
Score = 2420 bits (1310), Expect = 0.0
Identities = 1463/1535 (95%), Gaps = 18/1535 (1%)
Strand=Plus/Plus
Query 1 TCTACTCCAAAGATCTATCGGTTCACAAAAGTCTATTTATTTTCCTAGCAATCTCAC--- 57
|||||||||||||| | ||||||| |||||||||||||| |||| ||||||||||||
Sbjct 1 TCTACTCCAAAGATATCTCGGTTCGCAAAAGTCTATTTAATTTCATAGCAATCTCACTTT 60
Query 58 T-T-TT--------CTCAAAGATCTCTCACCGATAATGGCTTCTGCAGCTGTTGCATCGA 107
| | || ||||||||||||||| | ||||||||| || |||||||||||||
Sbjct 61 TCTCTTCCCCCACCCTCAAAGATCTCTCA--AAGAATGGCTTCCGCGGCTGTTGCATCGA 118
Query 108 TGGTTCTTGACCCTAAAGCATCTCCGGCTTTGATGGATCTATCCACCGCAGACGAAGAAG 167
|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 119 TGGTTCTTGACCCTAAAGCATCACCGGCCTTGATGGATCTATCCACCGCAGACGAAGAAG 178
Query 168 ATCTCTATGGTCGCCTGAAATCGCTTGAACGGCAACTAGAGTTCACCGATATCCAAGAGG 227
|||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |
Sbjct 179 ATCTCTATGGCCGCCTCAAATCGCTTGAACGACAACTAGAGTTCACCGATATCCAAGAAG 238
Query 228 AATATGTGAAAGACGAGCAAAAGAATCTCAAACGAGAGCTGTTACGGGCTCAAGAGGAGG 287
|||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 239 AATATGTGAAAGACGAGCAAAAGAATCTCAAACGAGAGCTGTTACGAGCACAAGAAGAGG 298
Query 288 TCAAACGAATTCAATCCGTGCCTCTCGTGATTGGTCAGTTCATGGAGATGGTAGATCAGA 347
||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||
Sbjct 299 TCAAACGAATTCAATCCGTGCCTTTGGTGATAGGTCAGTTCATGGAGATGGTAGATCAGA 358
Query 348 ACAACGGCATCGTCGGATCTACTACTGGCTCCAATTACTATGTCAGAATTCTCAGCACCA 407
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 359 ACAACGGCATCGTCGGATCTACTACTGGCTCCAATTACTATGTCAGAATTCTCAGCACAA 418
Query 408 TCAACAGAGAACTCTTAAAGCCTTCTGCTTCCGTCGCTCTTCACCGTCACTCCAACGCTC 467
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 TCAATAGAGAACTCTTAAAGCCTTCTGCTTCCGTCGCTCTTCACCGTCACTCCAACGCCC 478
Query 468 TTGTTGATGTTTTGCCCCCGGAGGCCGATTCTAGCATCTCCCTTCTCAGCCAATCTGAGA 527
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 479 TTGTTGATGTTTTGCCTCCGGAGGCTGATTCTAGCATCTCCCTTCTCAGCCAATCTGAGA 538
Query 528 AGCCTGACGTCTCCTACAATGATATTGGAGGATGCGATATTCAGAAACAGGAAATTCGTG 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 AGCCTGACGTCTCCTACAATGATATTGGAGGATGCGATATTCAGAAACAGGAAATTCGTG 598
Query 588 AGGCTGTTGAATTGCCTCTGACCCACCACGAGCTTTACAAGCAGATTGGTATAGACCCAC 647
||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 599 AGGCTGTTGAATTGCCTCTTACCCACCACGAGCTTTACAAACAGATTGGTATTGACCCAC 658
Query 648 CACGCGGTGTCTTGCTCTATGGACCTCCTGGTACTGGAAAGACTATGTTGGCTAAGGCTG 707
| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CTCGTGGAGTCTTGCTCTATGGACCTCCTGGTACTGGAAAGACTATGTTGGCTAAGGCTG 718
Query 708 TTGCTAATCACACAACTGCTGCCTTCATTAGGGTTGTTGGATCCGAGTTTGTTCAAAAGT 767
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 719 TTGCCAATCACACAACTGCTGCCTTCATTAGGGTTGTTGGATCCGAGTTTGTGCAAAAGT 778
Query 768 ATCTCGGCGAGGGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAACGCTC 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 779 ATCTCGGCGAGGGACCTCGTATGGTTCGTGATGTCTTCCGTCTTGCCAAGGAAAATGCTC 838
Query 828 CAGCTATCATCTTCATTGATGAGGTAGATGCCATCGCTACTGCTAGGTTTGATGCTCAAA 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CAGCTATCATCTTCATTGATGAGGTAGATGCCATCGCTACTGCTAGGTTTGATGCTCAAA 898
Query 888 CAGGAGCTGATAGGGAAGTTCAACGTATTCTCATGGAGCTTCTTAATCAGATGGATGGAT 947
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 899 CAGGAGCCGATAGGGAAGTTCAGCGTATTCTCATGGAGCTTCTTAATCAGATGGATGGAT 958
Query 948 TTGACCAGACCGTGAATGTCAAGGTCATAATGGCAACCAACAGGGCAGACACTCTAGATC 1007
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 959 TTGACCAGACCGTGAATGTCAAGGTCATAATGGCAACAAACAGGGCAGACACTCTAGATC 1018
Query 1008 CTGCACTCTTACGTCCTGGGAGACTTGATCGTAAGATTGAGTTCCCCCTTCCTGATAGAC 1067
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 CTGCTCTCTTACGTCCTGGAAGACTTGATCGTAAGATTGAGTTCCCCCTTCCTGATAGAC 1078
Query 1068 GTCAAAAGAGGCTTGTTTTCCAGGTATGCACCTCCAAAATGAACCTCAGCGATGAGGTTG 1127
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1079 GTCAAAAGAGGCTTGTTTTCCAGGTATGCACCTCCAAAATGAACCTTAGCGATGAGGTTG 1138
Query 1128 ACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGTGCTGCTGAGATAGCAGCAATCT 1187
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1139 ACTTGGAAGACTATGTTTCACGGCCTGATAAAATTAGCGCTGCTGAGATAGCAGCAATTT 1198
Query 1188 GCCAGGAAGCTGGTATGCATGCGGTGCGAAAGAACAGATATGTGATACTACCTAAGGATT 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 GCCAGGAAGCTGGTATGCATGCGGTGCGAAAGAACAGATATGTGATACTACCTAAGGATT 1258
Query 1248 TCGAGAAGGGGTACCGCGCAAATGTTAAGAAGCCAGACACGGACTTTGAGTTTTACAAGT 1307
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 TCGAGAAGGGCTACCGCGCAAATGTTAAGAAGCCAGACACGGACTTTGAGTTTTACAAGT 1318
Query 1308 GAAGAGAATGCAGAAATGGAATCAGATTATGGCTGTTGTTAAAATTCCAGTGTGTTTTGA 1367
|||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1319 GAAGAGAAAGCAGAAGTGGAACCAGATTATGGCTGTTGTTAAAATTCCAGTGTGTTTTGA 1378
Query 1368 GAATTATTTATGGACATGGAATCAAATTTGCAGTTAAATTATGAACTAAGTTGCATCTC- 1426
|||||||| | |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1379 GAATTATTAA-GGACATGGAATCAAATTTGCAGTTAAATTAAGAACTAAGTTGCATCTCC 1437
Query 1427 TAATTTGTGGAACTCGAGTTCATATTTGTGTTTAGTCTATCAGCTTTTTACAGTTTAATG 1486
|||||| || |||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 1438 TAATTTCTGTAACTCGAGTTCACATTTGTTTTTAGTCTATCAGCTTTTTACAGTTTAATG 1497
Query 1487 TATAAGAAAA-CAGGGGATGGTGTCCTTAGAATTG 1520
|||||||||| | ||||||||||||||||||||||
Sbjct 1498 TATAAGAAAAACTGGGGATGGTGTCCTTAGAATTG 1532
> AT4G27680.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr4:13821106-13823342
FORWARD LENGTH=1613
Length=1613
Score = 93.5 bits (50), Expect = 6e-18
Identities = 57/60 (95%), Gaps = 2/60 (3%)
Strand=Plus/Plus
Query 653 GGTGTCTTGCTCTATGGACCTCCTGGTACTGGAAAGACTATG-TTGGCTAAGGCTGTTGC 711
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||
Sbjct 518 GGTGTCTTGCTCTATGGACCTCCTGGTACTGGAAAGACTATGCTTG-CTAAGGCTATTGC 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75150215865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5