BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495944
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58320.2 | Symbols: | Kinase interacting (KIP1-like) family... 2383 0.0
> AT5G58320.2 | Symbols: | Kinase interacting (KIP1-like) family
protein | chr5:23577439-23579786 FORWARD LENGTH=1915
Length=1915
Score = 2383 bits (1290), Expect = 0.0
Identities = 1440/1512 (95%), Gaps = 11/1512 (1%)
Strand=Plus/Plus
Query 169 TTC-CAGCTTTCCCATAGGGTCCATTGA-TTTTGCAACCATGGATTATGATCTGGTTCGT 226
||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||
Sbjct 55 TTCTCAGCTTTCCCATAGGGTCCATTGATTTTTGCAGCCATGGATTATGATCTGCTTCGT 114
Query 227 TCCAAGAAGAGTATCAAACGAGCAGAATCCACCAAATCAAATCCATGGTGGTGGGATAGT 286
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 115 TCCAAGAAGAGTATCAAACGCGTAGAATCCACCAAATCAAATCCATGGTGGTGGGATAGT 174
Query 287 CATATCGGTCTCAAAAATTCTAAGTGGCTTGAGAATAATCTCGATGAGATGGACCGGAGC 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 175 CATATCGGTCTCAAAAATTCTAAGTGGCTTGAGAATAATCTCGATGAGATGGACCGGAGC 234
Query 347 GTGAAACGGATGGTGAAGTTGATAGAGGAGGATGCAGATTCGTTTGCCAAGAAGGCAGAG 406
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 235 GTGAAACGGATGGTGAAGTTGATAGAGGAGGATGCAGATTCTTTTGCTAAGAAGGCAGAG 294
Query 407 ATGTATTACCAGTCAAGACCTGAGCTTATTAGC-CTTGTCGAGGAGTTTCACCGTATGTA 465
|||||||||||||||||||||||||||||| || ||||| || |||||||||||||||||
Sbjct 295 ATGTATTACCAGTCAAGACCTGAGCTTATT-GCTCTTGTGGATGAGTTTCACCGTATGTA 353
Query 466 CCGTGCTTTGGCAGAGCGGTACGAGAACATCACTGGAGAGTTGAGAAAAGGCTCTCCTTT 525
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 354 CCGTGCTTTGGCAGAGCGGTACGAGAACATCACCGGAGAGTTGAGAAAAGGCTCTCCTTT 413
Query 526 AGAGCTTCAGTCACAGGGGTCTGGCCTTTCCGACATCTCTGCCTCTGACCT-TACTGCTT 584
|||||||||||||||||| ||||| ||||| ||||||||||| |||||||| | ||||||
Sbjct 414 AGAGCTTCAGTCACAGGGCTCTGGTCTTTCTGACATCTCTGCTTCTGACCTCT-CTGCTT 472
Query 585 TCTGGACCTCTAATGAGCTTAATAGGTTAGGCCGCCCCCCTTTTGGGCGACGTGCTCCTG 644
| ||||||||||||||| ||||||||||||| || || |||| ||| |||||||||||||
Sbjct 473 TATGGACCTCTAATGAGGTTAATAGGTTAGGTCGTCCTCCTTCTGGTCGACGTGCTCCTG 532
Query 645 GTTTTGAATACTTCCTTGGCAATGGAGGACTTCCCTCTGATCTTTATCACAAAGATGGAG 704
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 533 GTTTTGAATACTTCCTTGGCAATGGAGGACTTCCTTCTGATCTTTATCACAAAGATGGAG 592
Query 705 ATGATTCTGCTTCCATTACTGATTCTGAACTTGAATCTGATGATTCTTCTGTGACTAATT 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 ATGATTCTGCTTCCATTACTGATTCTGAACTTGAATCTGATGATTCTTCTGTGACTAATT 652
Query 765 ACCCTGGTTATGTGAGCATTGGCTCTGACTTTCAGTCCCTGAGCAAGAGGATCATGGATC 824
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 653 ACCCTGGTTATGTGAGTATAGGCTCTGACTTTCAGTCCCTAAGCAAGAGGATCATGGATC 712
Query 825 TTGAGACTGAACTACGTGAAGCCAAAGAAAGACTTAGGATGCAACTTGAAGGGAACACCG 884
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 713 TTGAGATTGAGCTACGTGAAGCCAAAGAAAGACTTAGGATGCAACTTGAAGGGAACACTG 772
Query 885 AGAGCTTGTTGCCGAGGGTGAAAAGTGAGAGTAAATTTGTTGATTTCCCTGCAAAACTTG 944
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 773 AGAGCTTGTTGCCGAGGGTGAAAAGTGAGACTAAATTTGTTGATTTCCCGGCAAAACTTG 832
Query 945 CTGCTTGTGAGCAAGAACT-AAGAGATGCAAATGAGAAGTTACAGAATTCAGAAGACCAA 1003
||||||||||||||||||| || ||||| |||||||||||||||||||||||||||||||
Sbjct 833 CTGCTTGTGAGCAAGAACTGAA-AGATGTAAATGAGAAGTTACAGAATTCAGAAGACCAA 891
Query 1004 ATCTATATTTTAAAGAGTCAGCTTGCAAGATACTTGCCATCTGAGTTGGATGATGAACGG 1063
|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
Sbjct 892 ATCTATATTTTAAAGAGTCAGCTTGCTAGATACTTGCCATCTGGGTTGGATGATGAACAG 951
Query 1064 -GACGAAGGGGCAGCTTCCACCCAAGACCTGGACATTGAGACTTTGTCTGAAGAGCTGAG 1122
| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 952 AG-CGAAGGGGCAGCTTCAACTCAAGAACTGGACATTGAGACTTTGTCTGAAGAGCTGAG 1010
Query 1123 AATTACAAGCCTGAGGCTTCGGGAGGCAGAGAAACAAAACGGTATCATGCGAAAAGAAGT 1182
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 1011 AATTACAAGCCTGAGGCTTCGGGAGGCAGAAAAACAAAACGGTATCATGAGAAAAGAAGT 1070
Query 1183 CGAGAAAAGCAAGTCTGATGACGCGAAACTCAAGAGTCTGCAAGACATGCTTGAGTCGGC 1242
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1071 CGAGAAAAGCAAGTCTGATGATGCAAAACTCAAGAGTCTGCAAGACATGCTTGAGTCGGC 1130
Query 1243 ACAGAAAGAAGCTGCAGCATGGAAAAGCAAGGCTAGTGCAGATAAAAGAGAGGTGGTGAA 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 ACAGAAAGAAGCTGCAGCATGGAAAAGCAAGGCTAGTGCAGATAAAAGAGAGGTGGTGAA 1190
Query 1303 GCTGCTTGATAGAATCTCCATGTTGAAATCGAGTTTAGCAGGTAGAGATCATGAGATCAG 1362
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1191 GCTGCTTGATAGAATCTCAATGTTGAAGTCGAGTTTAGCAGGTAGAGATCATGAGATCAG 1250
Query 1363 GGATTTAAAGACAGCATTGTCTGACGCAGAAGAGAAGATTTTCCCGGAGAAGGCACAGGT 1422
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1251 GGATTTAAAGACAGCATTGTCTGACGCAGAAGAGAAGATTTTCCCGGAGAAAGCACAGGT 1310
Query 1423 CAAAGCCGAGATAGCAAAGCTGTTGGAAGAAAAAATACACCGGGATGATCAGTTCAAAGA 1482
||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1311 CAAAGCCGATATAGCAAAGCTGTTGGAAGAAAAAATACACCGGGATGACCAATTCAAAGA 1370
Query 1483 GCTGGAAGCCAATGTGCGTTATCTTGAAGATGAGATAAGAAGGGTGACCACTGAGAAAAT 1542
||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||||||
Sbjct 1371 GCTGGAAGCCAATGTGCGTTATCTTGAAGATGAGAGAAGAAAGGTGAACAATGAGAAAAT 1430
Query 1543 AGAAGAAGAGGAAAAGCTGAAGGGCGAAATCGAGGTTCTGACACTGGAAAAGGTAGAGAA 1602
|||||| ||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1431 AGAAGAGGAGGAAAAGCTGAAGAGCGAAATCGAGGTGCTGACACTGGAAAAGGTAGAGAA 1490
Query 1603 AGAGTGGTGCATAGAAACGTTAAACAAAAAGGTGAGTGAACTAGAGTCAGAGATAAGTCG 1662
|| | | |||||||| ||||||| || |||||||||||| |||||||| |||||||||||
Sbjct 1491 AGGGAGATGCATAGAGACGTTAAGCAGAAAGGTGAGTGAGCTAGAGTCGGAGATAAGTCG 1550
Query 1663 ACTTGGAA-TGA 1673
|||||||| |||
Sbjct 1551 ACTTGGAAGTGA 1562
Score = 348 bits (188), Expect = 1e-94
Identities = 241/264 (91%), Gaps = 14/264 (5%)
Strand=Plus/Plus
Query 1667 GGAA-TGATAAGACAGCTCTGTTTTTCACTAGACTACTCCAGAGACGAATGCAAGAGACT 1725
|||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1653 GGAAGTGATAAGACAGCTCTGTTTTTCACTAGACTACTCCAGAGACGAATACAAGAGACT 1712
Query 1726 ACGCATAGCCTTTTCAGGGTATCGACCAAC-TGCACCATCATCCATTCTTGCTTCTTAAT 1784
||||||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||
Sbjct 1713 ACGCATAGCCTTTTCAGGGCATCCACCAACAAG-ACCATCATCCATTCTTGCTTCTTAAT 1771
Query 1785 TCTTATGTACAG--TACACTCTTTGTAACTTTGTTGGTGATACTTTCACATATAGGGAGC 1842
|||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 TCTTGTGTACAGTATATACTCTTTGTAACTTTGTTGGTGATACTTTCACATATAGGGAGC 1831
Query 1843 TGTTTTGAGATCGGTTTG-GaaaaaagaaaaagaaaaaGGCTCATAAGATTTGTGTTTGA 1901
||||||||||| |||||| | ||||| ||||||| ||||||||||||||||||||
Sbjct 1832 TGTTTTGAGATTGGTTTGTG------GAAAA-GAAAAAG-CTCATAAGATTTGTGTTTGA 1883
Query 1902 TTTTAGCTATGCATTATATAGTTT 1925
| ||||||||||||||| ||||||
Sbjct 1884 TATTAGCTATGCATTATCTAGTTT 1907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95330834955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5