BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495948
Length=1706
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58330.1 | Symbols: | lactate/malate dehydrogenase family p... 2846 0.0
AT5G58320.2 | Symbols: | Kinase interacting (KIP1-like) family... 75.0 2e-12
> AT5G58330.1 | Symbols: | lactate/malate dehydrogenase family
protein | chr5:23579722-23582395 REVERSE LENGTH=1728
Length=1728
Score = 2846 bits (1541), Expect = 0.0
Identities = 1655/1710 (97%), Gaps = 8/1710 (0%)
Strand=Plus/Plus
Query 1 ATCCATAGATTCCCCAATCCTC--TCTTTCTTACTCTGTCGCTTGGCGCGCTCTCTCTCC 58
|||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 1 ATCCATAGATTCCCCAATCCTCTTTCTTAC-TACTCTGTCGCTTGGCGCGCTCTCTCTCC 59
Query 59 ATTGTTCCAGTTCTGATATCTCACTTTCACAGTCTGTCTCCGTGCGATAATGGCCATGGC 118
|| ||||||||||||| |||||||||||||||| ||| || |||||||||||||||||||
Sbjct 60 ATAGTTCCAGTTCTGAAATCTCACTTTCACAGTTTGTGTCTGTGCGATAATGGCCATGGC 119
Query 119 AGAGCTCTCAACCCCCAAAACGACGTCGCCTTTTCTCAACTCTTCGTCTCGGCTTCGTCT 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 AGAGCTCTCAACCCCCAAAACGACGTCGCCTTTTCTCAACTCTTCGTCTCGGCTTCGTCT 179
Query 179 CTCTTCAAAATTGCATCTTTCAAACCATTTTCGCCAGCTTCTTCTTCCACCTCTCCACAC 238
||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 180 CTCTTCAAAATTGCACCTTTCAAACCACTTTCGCCATCTTCTTCTTCCACCTCTCCACAC 239
Query 239 AACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAGAATAGCCAAGCTCCTGTTGC 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 240 AACAACTCCCAACTCCAAAATCTCTTGCTCCGTTTCTCAAAATAGCCAAGCTCCTGTTGC 299
Query 299 GGTTCAAGAAAATGGATTGGTGAAGACGAAGAAAGAGTGTTATGGAGTGTTCTGCCTCAC 358
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTGCAAGAAAATGGATTGGTGAAGACGAAGAAAGAGTGTTATGGAGTGTTCTGCCTCAC 359
Query 359 CTATGATCTTAAAGCTGAAGAAGAGACTAGATCATGGAAGAAGTTAATCAATATTGCAGT 418
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 360 CTATGATCTTAAAGCTGAAGAAGAGACAAGATCATGGAAGAAGTTAATTAATATTGCAGT 419
Query 419 TTCAGGTGCTGCAGGAATGATTTCTAACCACCTTCTCTTCAAACTTGCTTCAGGGGAAGT 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 420 TTCAGGTGCTGCAGGAATGATTTCTAACCATCTTCTCTTCAAACTTGCTTCAGGGGAAGT 479
Query 479 ATTTGGTCCAGATCAACCCATTGCATTGAAACTTCTAGGATCAGAGAGGTCAATCCAAGC 538
||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 480 ATTTGGTCCAGATCAACCCATTGCATTGAAACTGCTAGGATCAGAGAGATCAATTCAAGC 539
Query 539 TCTTGAAGGTGTTGCAATGGAACTAGAAGATTCATTGTTCCCATTGTTGAGAGAAGTTGA 598
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 540 TCTTGAAGGTGTTGCAATGGAACTGGAGGATTCATTGTTCCCATTGTTGAGAGAAGTTGA 599
Query 599 TATAGGAACAGATCCAAATGAAGTGTTCCAAGATGTGGAGTGGGCTATTCTGATTGGAGC 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TATAGGAACAGATCCAAATGAAGTGTTCCAAGATGTGGAGTGGGCTATTCTGATTGGAGC 659
Query 659 AAAACCTCGAGGCCCTGGAATGGAACGTGCTGACTTGTTGGACATCAATGGCCAAATCTT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AAAACCTCGAGGCCCTGGAATGGAACGTGCTGACTTGTTGGACATCAATGGCCAAATCTT 719
Query 719 TGCTGAGCAAGGCAAAGCTCTTAACAAAGTTGCCTCTCCTAACGTCAAAGTCCTTGTTGT 778
||||||||| ||||||||||| ||||||| |||||||||||||||||| || ||||| ||
Sbjct 720 TGCTGAGCAGGGCAAAGCTCTGAACAAAGCTGCCTCTCCTAACGTCAAGGTTCTTGTAGT 779
Query 779 GGGAAACCCTTGCAACACCAATGCCTTGATTTGTCTTAAAAATGCTCCCAACATTCCTGC 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GGGAAACCCTTGCAACACCAATGCCTTGATTTGTCTTAAAAATGCTCCCAACATTCCTGC 839
Query 839 AAAGAACTTCCATGCCCTCACGAGGTTAGACGAAAATCGTGCCAAATGCCAGCTTGCTCT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 AAAGAACTTCCATGCCCTCACGAGGTTAGACGAAAATCGTGCCAAATGCCAGCTTGCTCT 899
Query 899 TAAAGCCGGCGTCTTCTATGACAAAGTGTCTAATATGACCATATGGGGAAATCACTCCAC 958
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TAAAGCCGGTGTTTTCTATGACAAAGTGTCTAATATGACCATATGGGGAAATCACTCCAC 959
Query 959 GACTCAGGTGCCAGACTTCTTAAATGCCAGAATTAATGGCCTGCCTGTGAAGGAGGTTAT 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GACTCAGGTGCCAGACTTCTTAAATGCCAGAATTAATGGCCTGCCTGTGAAGGAGGTTAT 1019
Query 1019 TACAGATCACAAGTGGTTAGAAGAAGGATTCACTGAGAGTGTGCAGAAGAGAGGTGGGTT 1078
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1020 TACAGATCACAAATGGTTAGAAGAGGGATTCACTGAGAGTGTGCAGAAGAGAGGTGGGTT 1079
Query 1079 ATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACAGCTGTTTCCATTGTTGATGC 1138
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1080 ATTAATTCAGAAATGGGGTCGATCTTCTGCTGCTTCTACTGCTGTTTCCATTGTTGATGC 1139
Query 1139 TATAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCAACTGGGGTGTACAC 1198
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 TATAAAGTCTCTTGTAACTCCTACTCCTGAGGGTGATTGGTTTTCGACTGGGGTGTACAC 1199
Query 1199 GGATGGAAATCCTTATGGTATTGAAGAGGGCCTCGTCTTCAGTATGCCATGCCGGTCAAA 1258
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1200 GGATGGAAATCCTTATGGTATTGAAGAGGGCCTTGTCTTCAGTATGCCATGCCGGTCGAA 1259
Query 1259 GGGAGATGGAGATTATGAACTTGTCAAGGATGTAGAAATTGATGACTACCTTCGCAAACG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1260 GGGAGATGGAGATTATGAACTTGTCAAGGATGTAGAAATTGATGACTACCTTCGCCAACG 1319
Query 1319 AATCGCCAAGTCGGAAGCGGAACTCTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGG 1378
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1320 AATCGCCAAGTCGGAAGCGGAACTGTTGGCTGAGAAGAGATGTGTTGCACACCTCACTGG 1379
Query 1379 AGAGGGCATCGCCTACTGTGATCTTGGTCCGGTAGATACTATGCTTCCTGGGGAAGTTTG 1438
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 AGAGGGCATTGCCTACTGTGATCTTGGTCCGGTAGATACTATGCTTCCTGGGGAAGTTTG 1439
Query 1439 ATTTTTGCAGGACGTTGAACATCTCATGTAAGCATTCTCTTCCGGGTTGTTAGCTGTACA 1498
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1440 ATTTTTGCAGGACGTTGAACATCTCAAGTAAGCATTCTCTTCCGGGTTGTTAGCTGTACA 1499
Query 1499 GAGCACAGCCACATTACTTATGATTGTTGTTCAGAATAAGAAAATGAATCTCTT-TGTTC 1557
||||||||||||||||||||||||| |||||||||||||||||||||| ||||| | |||
Sbjct 1500 GAGCACAGCCACATTACTTATGATTATTGTTCAGAATAAGAAAATGAAACTCTTAT-TTC 1558
Query 1558 TTATTTACATGCATCTGTATGTGATTTTACTTGAGCAATGCTCCAAAAGTCATATACAGC 1617
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1559 TTATTTACATGCATCTGTATGTGATTTTTCTTGAGCAATGCTCCAAAAGTCATATACAGT 1618
Query 1618 AGTATTTGTAAGCGCTTTAAAC-TATCCTCTGCTTTATTCCAGTTTCAGAACTCAAAACT 1676
||||||||||| | ||| |||| | || | ||||||||||||||||||||||||||| ||
Sbjct 1619 AGTATTTGTAAACACTTGAAACGTTTC-TATGCTTTATTCCAGTTTCAGAACTCAAA-CT 1676
Query 1677 AGATAATGCATAGCTAATATCAAACACAAA 1706
||||||||||||||||||||||||||||||
Sbjct 1677 AGATAATGCATAGCTAATATCAAACACAAA 1706
> AT5G58320.2 | Symbols: | Kinase interacting (KIP1-like) family
protein | chr5:23577439-23579786 FORWARD LENGTH=1915
Length=1915
Score = 75.0 bits (40), Expect = 2e-12
Identities = 43/44 (98%), Gaps = 1/44 (2%)
Strand=Plus/Minus
Query 1663 CAGAACTCAAAACTAGATAATGCATAGCTAATATCAAACACAAA 1706
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1915 CAGAACTC-AAACTAGATAATGCATAGCTAATATCAAACACAAA 1873
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84336915600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5