BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495982
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58590.1 | Symbols: RANBP1 | RAN binding protein 1 | chr5:23... 1260 0.0
AT1G07140.1 | Symbols: SIRANBP | Pleckstrin homology (PH) domai... 383 2e-105
> AT5G58590.1 | Symbols: RANBP1 | RAN binding protein 1 | chr5:23680079-23681798
REVERSE LENGTH=984
Length=984
Score = 1260 bits (682), Expect = 0.0
Identities = 777/822 (95%), Gaps = 9/822 (1%)
Strand=Plus/Plus
Query 1 TCAATACAGAGATGGCGAGCACTGGA-CCAGAGCGCGAGAACCGTGAAGAGGAAGCTGAA 59
||||||||||||||||||||||| || |||||||| |||||||||||||| ||| | |||
Sbjct 74 TCAATACAGAGATGGCGAGCACT-GAGCCAGAGCGTGAGAACCGTGAAGATGAAACCGAA 132
Query 60 GCCAACGAAGATGAAGATACCGGAGCTCAGGTAGCTCCGATCGTTAGGCTTGAAGAGGTT 119
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 GTCAACGAAGATGAAGACACCGGAGCTCAGGTAGCTCCGATCGTTAGGCTTGAAGAGGTT 192
Query 120 GCAGTCACCACCGGCGAGGAAAATGAAGACGCCGTCCTCGATCTGAAAGCGAAGATGTAT 179
||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||
Sbjct 193 GCAGTCACCACCGGCGAAGAAGATGAAGACGCCGTCCTCGATCTGAAATCGAAGATGTAT 252
Query 180 CGATTCGATAAAGAAGGGAACCAATGGAAGGAGAGAGGAGCTGGAACTGTTAAGTTATTG 239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 253 CGATTCGATAAAGAAGGGAACCAATGGAAGGAGAGAGGAGCTGGAACTGTGAAGTTATTG 312
Query 240 AAGCATAAGCAGACTGGCAAAGTTCGACTTGTTATGAGACAATCTAAAACCCTAAAGATC 299
||||||||| | ||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 313 AAGCATAAGGAAACTGGAAAAGTTCGTCTTGTTATGAGACAATCTAAAACCCTAAAGATC 372
Query 300 TGTGCCAATCATCTCATTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGACAAG 359
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 373 TGTGCCAATCACCTCATTTCGTCTGGGATGAGTGTTCAGGAACATAGTGGGAATGAAAAG 432
Query 360 TCTTGTTTATGGCACGCTACTGATTTCTCCGACGGCGAGTTGAAAGATGAGCTTTTCTGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 TCTTGTTTATGGCACGCTACTGATTTCTCCGACGGCGAGTTGAAAGATGAGCTTTTCTGC 492
Query 420 ATTAGATTTGCTTCTATTGAGAATTGCAAAACGTTTATGGAGAAGTTCACTGAAATAGCT 479
||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 493 ATTCGATTTGCTTCCATTGAGAATTGCAAAACATTTATGGAGAAGTTCACTGAAATAGCT 552
Query 480 GAAAGCCAGCAAGTAGGGAAAGAGAGCACAGAGGGCGACGAGGCTGCTGGTTTAATAGAG 539
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 553 GAAAGCCAGCAAGTAGGGAAAGAGAGCACCCAGGGCGACGAGGCTGCTGGTTTAATAGAG 612
Query 540 AATCTATCAGTTgaagaaaagaaaaacgatgagaaagccaaggaagcagaagataaagag 599
||||| || ||||| ||||| | || || ||||||||||||||||||||||| ||||||
Sbjct 613 AATCTTTCGGTTGAGGAAAATATAAGTGAGGAGAAAGCCAAGGAAGCAGAAGAGAAAGAG 672
Query 600 cctgcaaaggaagagaaagaaacaaaaatggagaaggcagaagaagagaagaaaacagag 659
|||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 673 CCTGCAAAGGAAGATAAAGAAACAAAAAAGGAGAAGGTAGAAGAAGAGAAGAAAACAGAG 732
Query 660 GCAAGCACTTAAGTCATCAAATTAAAATTGGTTGTTGGCATCAC-AAGTGTGCTTTGCTT 718
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 733 GCAAGCACTTAAGTGATCAAATTAAAATTGGTTGTTGGCATCACTAAGTGTGCTTTGCTT 792
Query 719 TATTTTAATATATAGATATTATACTTGGCACTGAACATGATGGTAGCTTCAAAAGCTCGA 778
||||||||||||| ||| | |||||||||||||||||||||||||||||||| | ||
Sbjct 793 TATTTTAATATAT---TAT-A--CTTGGCACTGAACATGATGGTAGCTTCAAAAGTTTGA 846
Query 779 GTCTTTGCGCTGTGTTAGAGAAAGAGAATCTTAAGATTTTTT 820
||||||||||||||||||||||||||||||||||||||||||
Sbjct 847 GTCTTTGCGCTGTGTTAGAGAAAGAGAATCTTAAGATTTTTT 888
> AT1G07140.1 | Symbols: SIRANBP | Pleckstrin homology (PH) domain
superfamily protein | chr1:2191723-2193793 REVERSE LENGTH=1429
Length=1429
Score = 383 bits (207), Expect = 2e-105
Identities = 392/480 (82%), Gaps = 17/480 (4%)
Strand=Plus/Plus
Query 12 ATGGCGAGC-ACTGGACCAGAGCGCGAGAACCGTGAAGAGG-A-A-GCTGAAGCCAACGA 67
||||||| | || | ||| |||| |||| || | || |||| | | || | ||| |||||
Sbjct 106 ATGGCGACCAAC-GAACCCGAGCACGAGCACAGAGACGAGGAAGAGGCCGGAGCTAACGA 164
Query 68 AGATGAAGATACCGGAGCTCAGGTAGCTCCGATCGTTAGGCTTGAAGAGGTTGCAGTCAC 127
||||| || |||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 165 GGATGAGGACACCGGAGCTCAGGTCGCTCCGATCGTTAGGCTTGAGGAGGTTGCCGTCAC 224
Query 128 CACCGGCGAGGAAAATGAAGACGCCGTCCTCGATCTGAAAGCGAAGATGTATCGATTCGA 187
|||||||||||| | ||||| |||||||| ||||||||| ||||| | |||||||||||
Sbjct 225 TACCGGCGAGGAAGACGAAGATGCCGTCCTTGATCTGAAATCGAAGCTTTATCGATTCGA 284
Query 188 TAAAGAAGGGAACCAATGGAAGGAGAGAGGAGCTGGAACTGTTAAGTTATTGAAGCATAA 247
||| || | ||| || |||||||||||||||||||| ||||| ||||| || ||||||||
Sbjct 285 TAAGGATGCGAATCAGTGGAAGGAGAGAGGAGCTGGTACTGTGAAGTTCTTAAAGCATAA 344
Query 248 GCAGACTGGCAAAG-TTCGACTTGTTATGAGACAATCTAAAACCCTAAAGATCTGTGCCA 306
| | ||||| ||| |||| || |||||||| ||||||||||| | ||||||||||| |
Sbjct 345 GAACACTGG-GAAGATTCGTCTCGTTATGAGGCAATCTAAAACTTTGAAGATCTGTGCTA 403
Query 307 ATCATC-TCATTTCGTCTGGG-ATGAGTGTTCAGGAACATAG-TGGGAATGACAAGTCTT 363
|||| | || || || ||| ||||||||||||||||| | ||||||||| ||||| |
Sbjct 404 ATCA-CTTCGTTAAATC-GGGCATGAGTGTTCAGGAACA-CGTTGGGAATGAAAAGTCAT 460
Query 364 GTTTATGGCACGCTAC-TGA-TTTCTCCGACGGCGAGTTGAAAGATGAGCTTTTCTGCAT 421
|| | ||||||||| | ||| ||| | || || || | || |||||||||||||| ||
Sbjct 461 GTGTGTGGCACGCT-CGTGACTTT-GCTGATGGTGAACTCAAGGATGAGCTTTTCTGTAT 518
Query 422 TAGATTTGCTTCTATTGAGAATTGCAAAACGTTTATGGAGAAGTTCACTGAAATAGCTGA 481
|||||||||||||||||||||||||||| |||||| | ||||||| ||| | |||||
Sbjct 519 CCGATTTGCTTCTATTGAGAATTGCAAAACATTTATGCAAAAGTTCAAGGAAGTTGCTGA 578
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39936146865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5