BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496002 Length=994 Score E Sequences producing significant alignments: (Bits) Value AT5G58770.1 | Symbols: | Undecaprenyl pyrophosphate synthetase... 1548 0.0 > AT5G58770.1 | Symbols: | Undecaprenyl pyrophosphate synthetase family protein | chr5:23734376-23735634 FORWARD LENGTH=1092 Length=1092 Score = 1548 bits (838), Expect = 0.0 Identities = 947/999 (95%), Gaps = 10/999 (1%) Strand=Plus/Plus Query 1 AATCGATTCTCTTAAGATGTTATCTCTACGAGTTCGTCCTCCTACATCCTTCGATTTCCG 60 ||||||||||||||||||||||||||||||||||| | |||| || |||||||||||||| Sbjct 5 AATCGATTCTCTTAAGATGTTATCTCTACGAGTTCCTACTCCCACTTCCTTCGATTTCCG 64 Query 61 GCGAT-TTAACGCCGG-GTATTTAGAGCGGCGATGGCGGTTAAGTAGAGACT-GCTTTCT 117 ||||| | || ||||| | ||||||||||||||||||||||||||||||| | ||||||| Sbjct 65 GCGATATCAA-GCCGGAG-ATTTAGAGCGGCGATGGCGGTTAAGTAGAGA-TAGCTTTCT 121 Query 118 CTCTTTCTCGCCAAAATTGGAGGAAAACAGAGGAGTCCGATTCGGAGTCAAATCTTCTAA 177 |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| || Sbjct 122 CTCTTTCTCGCCAAAATTCGAGGAAAACAGAGGATTCCGATTCGGAGTCAAATCTTCCAA 181 Query 178 ATCGGAGGTTTCGTTTACGGCGGCGGAGGAGGAAGAAACTCTGCCGGAAGAGCTTCAACC 237 |||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || | Sbjct 182 ATCGGATGTTTCGTTTACGGCGGCGGAGGAAGAAGAAACTCTGCCGGAAGAGCTACATGC 241 Query 238 AGAGCTGATGCCGAAACACGTGGCGATTATAATGGACGGAAACGGAAGATGGGCAAAGAA 297 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 242 AGAGCTGATGCCGAAACATGTGGCGATTATAATGGACGGAAACGGAAGATGGGCGAAGAA 301 Query 298 TCGAGGTCTTCAACCTTGGGATGGTCACAGAGCTGGCGTTGAAGCTTTGAAAGAGATCGT 357 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 302 TCGTGGTCTTCAACCTTGGGATGGTCACAGAGCTGGCGTTGAAGCTTTGAAAGAGATCGT 361 Query 358 TGAGCTTTGTGGTAAATGGGGAATTCAAGTCCTCACTGTTTTCGCCTTCTCTACTGATAA 417 ||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||| Sbjct 362 TGAGCTTTGTGGTAAATGGGGAATTCAAGTCCTTACAGTTTTCGCTTTCTCTACTGATAA 421 Query 418 TTGGATTAGACCAAGGATTGAGATTGATTTCTTGTTTAGTTTATTCGAGAGAGCACTCAA 477 ||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||| Sbjct 422 TTGGATTAGACCAAGAATTGAGATTGATTTCTTGTTTAGTTTATTTGAGAGATCACTCAA 481 Query 478 ATCAGAATTTCAGAACTTAGCCGAGAACAATGTTCGGATATCGATTATTGGAGATTCATC 537 | |||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || Sbjct 482 AACAGAATTTCAGAACTTAGCCAAGAACAATGTTCGGATATCGATCATTGGAGATTCCTC 541 Query 538 GAAACTGCCAAAATCTCTTTTAAGAGTGATTAACGAAGTTGAGGAAGTTACAAAGAACAA 597 |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 GAAACTTCCGAAATCTCTTTTAAGAGTGATTAACGAAGTTGAGGAAGTTACAAAGAACAA 601 Query 598 CACGAGGCTTCAGCTAATCGTAGCGGTTGGTTACAGTGGGAAATACGATGTTTTACAAGC 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 602 CACGAGGCTTCAGCTAATCGTAGCGGTTGGTTACAGTGGGAAATACGATGTTTTACAAGC 661 Query 658 GTGTAGAGGTATCGCGCAG-AGAGTTAAAGATGGCGAGATCGGAGTTGAGGAGATAGACG 716 |||||||||||||||| || ||||| ||||||||||| |||| ||||||||||||||||| Sbjct 662 GTGTAGAGGTATCGCG-AGGAGAGTGAAAGATGGCGAAATCGAAGTTGAGGAGATAGACG 720 Query 717 AGAGACTGATTGAGGAAGAATTGGAGACCAATTGTACTGAGTTTCCTTACCCGGATTTGC 776 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | Sbjct 721 AGAGACTGATTGAGGAAGAATTGGAGACGAATTGTACTGAGTTTCCTTACCCGGATTTAC 780 Query 777 TGATAAGAACGAGTGGTGAGCTTAGAGTGAGTAACTTCTTGTTGTGGCAATTGGCTTATA 836 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TTATAAGAACGAGTGGTGAGCTTAGAGTGAGTAACTTCTTGTTGTGGCAATTGGCTTATA 840 Query 837 CAGAGCTCTTT-TTTGCTCAAGAACTTTGGCCTGATTTTGGGAGAAGTGGTTTTATCAAA 895 ||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| || Sbjct 841 CAGAGCT-TTTCTTTGCTCAAGAACTTTGGCCTGATTTTGGGAGAAGCGGTTTTATCGAA 899 Query 896 GCTTTAACGTCGTTTCAGCAGAGACAACGACGCTTTGGTGGTCGGAAATCTTGAATTTCT 955 ||||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||||| Sbjct 900 GCTTTGATGTCGTTTCAGCAGAGACAACGACGCTTTGGTGGTCGTAAATCTTGATTTTCT 959 Query 956 TGCAACTGGTGTAATGAAAACTGTATATGATGTGTAATA 994 ||||| ||||||||||||||||| ||||||||||||||| Sbjct 960 TGCAAATGGTGTAATGAAAACTGAATATGATGTGTAATA 998 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48676888443 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5