BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496006
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
AT5G58787.1 | Symbols: | RING/U-box superfamily protein | chr5... 1459 0.0
> AT5G58787.1 | Symbols: | RING/U-box superfamily protein | chr5:23742450-23744604
FORWARD LENGTH=1292
Length=1292
Score = 1459 bits (790), Expect = 0.0
Identities = 1031/1139 (91%), Gaps = 50/1139 (4%)
Strand=Plus/Plus
Query 40 CTGTCTTCATTAATGTAATTTTGATCATCGGATTGGGTGAAA-CATC-TAAAATTCTGCT 97
|||||| ||||||||||||||||||||||||||||||||||| | | | ||| || ||
Sbjct 62 CTGTCTACATTAATGTAATTTTGATCATCGGATTGGGTGAAAGAAACATCAAA--CTCCT 119
Query 98 AAAAGAGAAGCctttaaaattttcctttttttctttaaac-aaaacaaaa-gaagaaaa- 154
||||||||||||||| ||| |||||| ||||| | ||||||||| ||||||||
Sbjct 120 AAAAGAGAAGCCTTT-AAA------GTTTTTT-TTTAATCAAAAACAAAAGGAAGAAAAT 171
Query 155 tttactttttgttttGGAT-GCTATG-A--ATC-T--TCGTTTTGCTTTCTTGATTCTCT 207
||| ||||||||||| ||| || ||| | ||| | ||| |||||||||||||||||||
Sbjct 172 TTTCCTTTTTGTTTTAGATGGC-ATGAATCATCATCATCGCTTTGCTTTCTTGATTCTCT 230
Query 208 GTTTCGTTTGATGGGAACT-ATTTTCTGGGAAATTAATTCATTCA-C--CTGCCATGGCT 263
||||||||||||||| | ||||||||| |||| ||||||||| | |||||||||||
Sbjct 231 ATTTCGTTTGATGGGATTTGTTTTTCTGGG-AATTTATTCATTCACCTGCTGCCATGGCT 289
Query 264 AAATTATCTTTCAAGGATTCGCTGAAAGCTCTTGAAGCCGATATTCAACACGCTAATACA 323
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 290 AAATTATCTTTCAAGGATTCTCTTAAAGCTCTTGAAGCCGATATTCAACACGCTAATACA 349
Query 324 CTAGCTTTAGATTGTCCTCGGGAGAAGGATGGAGCGCGCGTTCAGATGAGATTATCGTAC 383
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 350 CTAGCTTTAGATTATCCTCGGGAGAAGGATGGAGCGCGCGTTCAGATGAGATTATCATAC 409
Query 384 AGCCCGGCTGCTCAAttttttctttttCTTGTACAATGGACTAATTGTCAGCTTGCTGGT 443
|||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 410 AGCCCGACTGCTCAATTTTTTCTTTTTCTTGTACAATGGACTGATTGTAAGCTTGCTGGT 469
Query 444 ACCCTCGGTTTACTCAGAGTTCTTATTTATATGACTTATGCAGATGG-AAAGACCACGAT 502
||||||||||||||||||||||||||||||||||||||||||||| ||| || || ||
Sbjct 470 TTCCTCGGTTTACTCAGAGTTCTTATTTATATGACTTATGCAGATGGGAAA-ACAACCAT 528
Query 503 GTCGGTTTACGAAAGAAAAGCCAGTATCAGAGAGTTCTACGCTGTGATATTACCGTCTTT 562
||||||||||||||||||||||||||| ||||||||| | |||||||||||||| |||||
Sbjct 529 GTCGGTTTACGAAAGAAAAGCCAGTATTAGAGAGTTCCAAGCTGTGATATTACCATCTTT 588
Query 563 GTCACAACTA-A--GGGGTATTACAGACGTAGATGACCGCAGACAAAAAGAGGTATGCAA 619
|||||||||| | ||||| |||||||| |||||||| ||| ||||||||||||||||||
Sbjct 589 GTCACAACTACAAAGGGGTGTTACAGACATAGATGACAGCAAACAAAAAGAGGTATGCAA 648
Query 620 GATGCGATACAGAAAGAAGGATGAGAGCGAGAAGTGCGAGCTCTCGGAGATTGAGATAGA 679
|||||||||||||||||||||||||||||| || || || |||||||||||| ||
Sbjct 649 GATGCGATACAGAAAGAAGGATGAGAGCGA-AA-TG-----TC--GGAGATTGAGATCGA 699
Query 680 GAGGGAAGAAGAATGTGGAATCTGTATGGAAATGAACAGCATGGTGGTGCTACCAAACTG 739
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 700 GAGGGAAGAAGAATGTGGAATCTGTATGGAGATGAACAGCAAGGTGGTGCTACCAAACTG 759
Query 740 TACTCATTCTTTATGCATCAAGTGTTATCGCGATTGGCGAGGGAGATCACAGTCATGCCC 799
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 760 TACTCATTCTTTATGCATCAAGTGTTACCGCGATTGGCGAGGGAGATCACAGTCATGCCC 819
Query 800 CTTCTGCAGAGACAGCCTTAAAAGAGTAGACTCGGGTGATCTCTGGATGTTTTTGGACCA 859
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 820 GTTCTGCAGAGACAGCCTTAAAAGAGTAGATTCAGGTGATCTCTGGATGTTTTTGGACCA 879
Query 860 AAACGATACAGTGAATCTTGCTGCAATCGCGAGAGAGAACCAGAAAAGGTTGTTTACGTA 919
|||||||||||||||||| |||||||||| ||||||||||||||| | ||||||| |||
Sbjct 880 AAACGATACAGTGAATCTCACTGCAATCGCTAGAGAGAACCAGAAACGATTGTTTATGTA 939
Query 920 CATTGAGAAGTTGCCACTGGTGGTTCCAGATCAAGCGTATGCGTCTTCTCCTTACGATTG 979
|||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 940 CATTGAGAAGTTACCACTAGTGGTTCCAGATCAAGTGTATGCGTCTTCTCCTTACGATTT 999
Query 980 CCATGTGAGGTGAAGGCGGAAAAACCGGTTCTGGTAAATTTTTATCTGTATACTTGGGGG 1039
||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1000 CCATGTGAGATGAAGGCGGAAAA-CCGGTTCTGGTAAATCTTTATCTGTATACTTGGGG- 1057
Query 1040 AAAAG-AGGACTCCTTTTGTATATGTATTAGAGTTAGTACAAGTAGTAGTAATCAGTCTC 1098
||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 1058 AAAAGGAGGACTTGTTTTGTAAATGTATTAGAGTTAGTACAAGTAGTAGTAATCAGTCAC 1117
Query 1099 TTTCTT-----TTATCTTGGGAAAGTTCCACTTACTACGTGCTTTTTCTGCATTTTGCT 1152
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1118 TTTCTTCACCATTATCTTGGGAAGGTTCCACTTACTACGTGCTTTTTCTGCATTTTGCT 1176
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57931428930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5