BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496032
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59240.1 | Symbols: | Ribosomal protein S8e family protein ... 1203 0.0
> AT5G59240.1 | Symbols: | Ribosomal protein S8e family protein
| chr5:23902465-23903733 REVERSE LENGTH=857
Length=857
Score = 1203 bits (651), Expect = 0.0
Identities = 771/825 (93%), Gaps = 24/825 (3%)
Strand=Plus/Plus
Query 1 TTAAACCTCTGAAGCTCGTGAGAACAAAAAGCTTGAATCAAACGCTTTTGAAATCATGGG 60
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 9 TTAAACCTCTAAAGCTCGTGAGAACCAAAAGCTTGAATCAAACGCTTTTGAAATCATGGG 68
Query 61 TATCTCTCGTGATTCAATTCACAAGAGACGTGCCACTGGTGGTCAGCAGAAGATGTGGAG 120
||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 69 TATCTCTCGTGATTCAATTCACAAGAGACGTGCCACTGGTGGTAAGCAAAAAATGTGGAG 128
Query 121 AAAGAAGAGAAAGTATGAGCTTGGAAGACAACCAGCTAACACTAAGCTGTCAAGTAACAA 180
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 129 GAAGAAGCGAAAGTATGAGCTTGGAAGACAACCAGCTAACACTAAGCTGTCAAGTAACAA 188
Query 181 GACAGTGAGGAGGATCCGTGTGCGTGGTGGGAATGTAAAGTGGCGAGCTTTGAGGCTCGA 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 189 GACGGTGAGGAGGATCCGTGTGCGTGGTGGGAATGTAAAGTGGCGAGCTTTGAGGCTCGA 248
Query 241 TACTGGAAACTTCTCGTGGGGAAGCGAAGCTGTGACCCGTAAGACTAGGATCTTGGATGT 300
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 249 TACTGGAAACTTCTCGTGGGGAAGTGAAGCTGTGACCCGCAAGACTAGGATCTTGGATGT 308
Query 301 GGCTTACAATGCATCAAACAATGAGCTTGTTCGTACACAAACTCTTGTGAAGAGTGCTAT 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GGCGTACAATGCATCAAACAATGAGCTTGTTCGTACACAAACTCTTGTGAAGAGTGCTAT 368
Query 361 TGTTCTAGTTGATGCTGCTCCGTTTAAACAAGGGTATCTCCAACACTATGGAGTTGATAT 420
||||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 369 TGTTCAAGTTGATGCTGCTCCATTCAAGCAAGGGTATCTCCAACACTATGGAGTTGATAT 428
Query 421 TGGTCGCAAGAAGAAAGGAGATGCAGTAACCACTGAGGAAGTGAAGAAGAGCAATCATGT 480
||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 429 TGGTCGCAAGAAGAAAGGAGAGGCCGTTACCACTGAGGAAGTGAAGAAGAGCAATCATGT 488
Query 481 TCAAAGGAAGCTGGAGATGCGACAAGAAGGCCGAGCACTTGACTCGCACCTTGAAGAGCA 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 489 TCAAAGGAAGCTGGAGATGCGACAAGAAGGCAGAGCACTTGACTCGCACCTTGAAGAGCA 548
Query 541 GTTTAGCAGTGGAAGGTTGCTTGCATGTATCGCATCAAGACCCGGACAAAGTGGCCGTGC 600
|||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||
Sbjct 549 GTTTAGCAGTGGAAGGTTACTTGCATGTATCGCATCAAGACCCGGACAATGTGGTCGTGC 608
Query 601 TGATGGGTACATATTGGAAGGAAAAGAGCTCGAATTCTACATGAAGAAACTTCAAAAGAA 660
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 609 TGATGGGTACATATTAGAAGGTAAAGAGCTCGAATTCTACATGAAGAAACTTCAAAAGAA 668
Query 661 GAAGGGCAAGAATGCTGGTGCTGCATAAGAAACAAAAC-----ATT----TTTGA-T--C 708
|||||||||||||||||||||||||||||| ||||||| ||| ||| | | |
Sbjct 669 GAAGGGCAAGAATGCTGGTGCTGCATAAGATACAAAACTTTCGATTGGGATTTTACTTAC 728
Query 709 -TT---GATA--G----TT-GAAAAGCCTTATTTATTCTTTTGTTGAGTTTAGAGTTTGC 757
|| ||| | || ||||||| ||||| |||||||||||||||| |||||||||
Sbjct 729 GTTTTTGATCTTGAAAATTTGAAAAGCTTTATTCATTCTTTTGTTGAGTT-AGAGTTTGC 787
Query 758 ATTGAGAGATCTTCATGTTTATGGATATTGATCATTTATAGTCAA 802
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 788 ATTGAGAGATCTTCATGTTTATGGATTTTGATCATTTATAGTCAA 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39031932219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5