BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496051
Length=1393
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59050.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1210 0.0
> AT5G59050.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G54000.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr5:23839157-23842659 REVERSE LENGTH=1416
Length=1416
Score = 1210 bits (655), Expect = 0.0
Identities = 764/814 (94%), Gaps = 17/814 (2%)
Strand=Plus/Plus
Query 66 CttttttttCTAGACAAGAATAATCAAATGGAATCTACTGAACTACACGACATAGATTTC 125
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 114 CTTTTTCTTCTAGACAAGAACAATCAAATGGAATCTACTGAACTACACGACATAGATTTC 173
Query 126 ATTTCAAA------T--C-CCTTTTCTGAGCCAACTTTCTTCACTCCAACCACAAGCTCT 176
|||||||| | | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 174 ATTTCAAATCCTTTTACCTCCTTTTCTGAACCAACTTTCTTCACTCCAACCACAAGCTCT 233
Query 177 CTCCGACCCGACTTCGTATCCGACGAACCTGATTCACCAAAAGCACAAAAA-GAAGACGA 235
||||||||||||||||||||||||||||| ||||||||||| ||| ||||| ||||||||
Sbjct 234 CTCCGACCCGACTTCGTATCCGACGAACCGGATTCACCAAAGGCA-AAAAACGAAGACGA 292
Query 236 AGAAGACGAGTACATCACCGAATTGACTCGCCAGATGACTAACTATATGCTTCAAGACGA 295
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 293 AGAAGACGAGTACATCACCGAGTTGACTCGCCAGATGACTAACTATATGCTTCAAGACGA 352
Query 296 TGAAAAGCATCAAAAGTCTTGTGGTGGTGGCTCTGGTTCGCCGCAATCGACTCTCTGGTC 355
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 353 TGAAAAGCATCAAAAGTCTTGTGGTAGTGGCTCTGGCTCGCCGCAATCGACTCTCTGGTC 412
Query 356 ACCATTTGCTTCCGGTTTGAGCAGTCCAATTGCCCCTTCCCGTGAACCATCGCCGCCGCT 415
|||||||||||| || || ||||||||||| | |||||||||||||||||||||||| ||
Sbjct 413 ACCATTTGCTTCAGGATTAAGCAGTCCAATAGGCCCTTCCCGTGAACCATCGCCGCCACT 472
Query 416 AACTCCAGCGAC-G-A-CGGTGGAGAAAATCATGACGAATATCGATACAAAACCTGTAAC 472
|||||| || || | | ||||||||||||||||||| || || ||||||||||| |||||
Sbjct 473 AACTCCGGCAACGGTACCGGTGGAGAAAATCATGACAAAGATTGATACAAAACCAGTAAC 532
Query 473 GATACCTTTTCAATCAAAACAAGCTCTAATCGATGACCAGATCCGATCCATTCAAGCAAA 532
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 533 GATCCCTTTTCAATCAAAACAAGCTCTAATCGATGACCAGATCCGATCCATTCAAGCAAA 592
Query 533 CTTCCAGAAGATCAAAAAGGAGAAAGAGAAAGAGAGGCAACGCAACGCTGACGTTTTGGG 592
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CTTCCAGAAGATTAAAAAGGAGAAAGAGAAAGAGAGGCAACGCAACGCTGACGTTTTGGG 652
Query 593 ACACAGAGCAAGGAACTaccaccacctccaccaccaccaGAGAGTC-AGGTCAGGCGTGA 651
|||| |||||| |||||||||||||||||||| |||||||| | ||||||||||| |
Sbjct 653 GCACAAAGCAAGAAACTACCACCACCTCCACCAGAACCAGAGA-CCTAGGTCAGGCGTTA 711
Query 652 AGGCGGTGTTCGTTGATGGGTCGGGTTCAAGAACCGGGTCGGGTGGAACCGGAGTGTTCT 711
|||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 712 AGGCGGTGTTTGTTGACGGGTCGGGTTCAAGAACCGGGTCGGGTGGTACCGGAGTGTTCT 771
Query 712 TACCACGTGGTCATGGTACCGTTGTGGAGTCACGCAAGAAATCAGGATGTTCAACAGTAA 771
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 TACCGCGTGGTCATGGTACCGTTGTGGAGTCACGCAAGAAATCAGGATGTTCAACAGTAA 831
Query 772 TAATACCAGCAAGAGTAGTTGAAGCCTTGAAAGTTCACTTTGACAAATTGGGTGTTCCTT 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TAATACCAGCAAGAGTAGTTGAAGCCTTGAAAGTTCACTTTGACAAATTGGGTGTTCCTT 891
Query 832 CTACATTCTCTTCTGATAATCCCTCCTTTTCATG 865
|||||||||||||||||| |||||||||||||||
Sbjct 892 CTACATTCTCTTCTGATA-TCCCTCCTTTTCATG 924
Score = 632 bits (342), Expect = 2e-180
Identities = 457/508 (90%), Gaps = 25/508 (5%)
Strand=Plus/Plus
Query 899 TTTCTTGAATGCTTTGTTGGTGTCCATGAAGAACAAAAACAACAAAAGTAACAAAAGTAC 958
|||| || |||| ||||||||||||||||| |||||||| | |||||||||||||| |||
Sbjct 918 TTTCATG-ATGCATTGTTGGTGTCCATGAACAACAAAAAGATCAAAAGTAACAAAAATAC 976
Query 959 TTCATCGTCTCGGGTACAAAGTGGATCACCGTACGTAATGGAGATGTCGGCCGAGAGCCA 1018
||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 977 TTCATTATCTCGGGTACAAAGTGGATCACCGTACGAAATGGAGATGTCGGCAGAGAGCCA 1036
Query 1019 CCAAGAACCACCGGCGGATTTGCCACAGGAATGGACGTACTGATAAAACA-T-G--C-T- 1072
|||||||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 1037 CCAAGAACCACCGGCGGATTTGCCACAGGAATGGACGTACTGATAAAACATTGGCACATG 1096
Query 1073 CT--TGGTTGCTGCAGTTATAGGTTTTCAAAAGGTAGGGTCTTTTCGGATTGAATATCTT 1130
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1097 CTCCTGGTTGCTGCAGTTATAGGTTTTCAAAAGGTAGGGACTTTTCGGATTGAATATCTT 1156
Query 1131 CTAGTGGATCAAAATaaaaa-aaGAAAGCTTTCAAAAACCATTAtttttttATTGGAAGT 1189
||||||| |||||||||||| || || ||||||||||||||||||||||| ||||||| |
Sbjct 1157 CTAGTGGGTCAAAATAAAAATAA-AATGCTTTCAAAAACCATTATTTTTTAATTGGAAAT 1215
Query 1190 ATATAGATTTTAAAAGTTGGTGAAATTTTCTTTTATTATTGTGATAAAATCAATAATTCT 1249
| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1216 ACATAGATTTTAAAATTTGGTGATTTTTTCTTTTATTATTGTGATAAAATCAATAATTCC 1275
Query 1250 TGTGATAAAAGAACAATAAAATGAGCATATATATGCCATGCCTATTGTA-G---TAAGGG 1305
||||||||||||||||||||||| | |||||| |||||||||||||| | ||||||
Sbjct 1276 TGTGATAAAAGAACAATAAAATGTTC--ATATATCCCATGCCTATTGTATGTAATAAGGG 1333
Query 1306 ATTGTTTGTTTTTATGTAAGATTCCTTGTAATAAAAGCATTATGCATCTCGCCAGACGCC 1365
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 GTTGGTTGTTTTTATGTAAGATTCCTTGTAATAAAAGCATTATGCATCTCGCCAG----- 1388
Query 1366 AGTGTAATAAAAAAGCTTTTATTTGATT 1393
||||||||||| || |||||||||||
Sbjct 1389 --TGTAATAAAAA-GCCTTTATTTGATT 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68624145015
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5