BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496053
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59030.1 | Symbols: COPT1 | copper transporter 1 | chr5:2383... 1064 0.0
> AT5G59030.1 | Symbols: COPT1 | copper transporter 1 | chr5:23833728-23834511
REVERSE LENGTH=784
Length=784
Score = 1064 bits (576), Expect = 0.0
Identities = 677/723 (94%), Gaps = 18/723 (2%)
Strand=Plus/Plus
Query 1 TTTTCCAATCCTCCCAACCAAAACACAAGAGCCAAGAACAAAGAAAccatggatcatgat 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 TTTTCCTCTCCTCCCAACCAAAACACAAGAGCCAAGAACAAAGAAACCATGGATCATGAT 66
Query 61 cacatgcatggcatg--t----c-tc--caccatcatcatcatcaccatcatccatgatg 111
||||||||||| ||| | | || || |||||||||||||||||||||||||||||
Sbjct 67 CACATGCATGGAATGCCTCGACCATCATCATCATCATCATCATCACCATCATCCATGATG 126
Query 112 AACAATGGATCGATGAACGGAGGAGGAGGACATCCCCACATGAAGATGATGATGCACATG 171
||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 127 AACAATGGATCCATGAACGAAGGAGGAGGACATCACCACATGAAGATGATGATGCACATG 186
Query 172 ACATTCTTTTGGGGCAAGAACACGGAGGTTCTCTTCTCCGGTTGGCCCGGAACAAGCTCC 231
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 ACCTTCTTTTGGGGCAAGAACACGGAGGTTCTCTTCTCCGGTTGGCCCGGAACAAGCTCC 246
Query 232 GGCATGTATGCTCTTTGTCTCATCTTTGTCTTCTTCCTCGCCGTCCTCACCGAATGGCTA 291
|||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 247 GGCATGTATGCTCTTTGTCTTATCTTTGTCTTCTTTCTCGCCGTCCTCACCGAATGGCTT 306
Query 292 GCTCATTCCTCTCTCCTTCGTGGCTCTACCGGAGATTCGGCTAACCGCGCCGCCGGGCTA 351
||||||||||||||||| |||||||| ||||||||||||||||| || ||||||||| ||
Sbjct 307 GCTCATTCCTCTCTCCTCCGTGGCTCCACCGGAGATTCGGCTAATCGTGCCGCCGGGTTA 366
Query 352 ATCCAAACCGCCGTGTATACCCTCCGTACCGGTCTTGCCTATCTAGTCATGCTCGCCGTC 411
|||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct 367 ATCCAAACCGCCGTGTATACCCTCCGTATCGGCCTCGCCTATCTAGTCATGCTCGCCGTC 426
Query 412 ATGTCGTTTAACGCCGGTGTGTTTCTCGTCGCTCTCGCCGGTCATGCCATTGGTTTCATG 471
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 427 ATGTCGTTTAACGCCGGTGTGTTTCTCGTCGCTCTGGCCGGTCATGCCGTTGGTTTCATG 486
Query 472 TTGTTCGGAAGCCAAACTTTCCGGAATACCTCCGATGACCGGAAAACTAACTATGTTCCT 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 487 TTGTTCGGAAGCCAAACTTTCCGGAATACCTCCGATGACCGGAAAACTAACTATGTTCCT 546
Query 532 CCTTCAGGTTGTGCTTGTTGATGATAatattatatatgatttatatatatgtatGGATTG 591
|| ||||||||||||||||||||||||||| | || | |||||||||||||||||||||
Sbjct 547 CCCTCAGGTTGTGCTTGTTGATGATAATATCA-AT--GCTTTATATATATGTATGGATTG 603
Query 592 ATTCATGCTTGTGGTTCAAATTAAAGATCTAGGGTT-GTAGTTTTCTTGGTTATTGT--G 648
|| |||||||||| |||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 604 ATCCATGCTTGTGATTCAAATTAAAGATCTAGGGTTTGTAGTTTTCTTGGTTATTTTATG 663
Query 649 GATTTGTTCTTGAGGTTCATGTGTGTG--AATGTGAGGAGGAGAAATATTTGATATTTTC 706
|||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 664 GATT-GTTCTTGAGGTTCATGTGTGTGTGAATGTGAGGAGGAGGAATATTTGATATTTTC 722
Query 707 TAT 709
|||
Sbjct 723 TAT 725
Score = 65.8 bits (35), Expect = 6e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 709 TTTGTTTTATTCTGCTGGCTAATGGTGAAAGCTGA 743
|||||||||||||||||||||||||||||||||||
Sbjct 748 TTTGTTTTATTCTGCTGGCTAATGGTGAAAGCTGA 782
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36068117546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5