BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496062 Length=1362 Score E Sequences producing significant alignments: (Bits) Value AT5G59350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1496 0.0 > AT5G59350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:23940782-23942213 FORWARD LENGTH=1432 Length=1432 Score = 1496 bits (810), Expect = 0.0 Identities = 1093/1217 (90%), Gaps = 69/1217 (6%) Strand=Plus/Plus Query 191 TTCACACATTTAGGTTTTTCTCAATCGTT--ATATATGGTAACCAAGTCTTATTCCATTC 248 ||||| |||||| ||||||||||||| || ||||||||||||||| ||||||||||||| Sbjct 212 TTCACGCATTTACGTTTTTCTCAATCTTTACATATATGGTAACCAACTCTTATTCCATTC 271 Query 249 CTCTGTAATTCACACAAATTCCTTG-CCAAAATAAGGttttttttttttttttttttAAT 307 |||||||| ||||||||||||| || || ||| || || |||||| |||| || Sbjct 272 CTCTGTAACTCACACAAATTCC-TGTCC-AAA-AA-------TTAGTTTTTTCTTTTCAT 321 Query 308 GTGATGTGAGAATTTGGGTGAAGAGAAAGATGAAGACTATTAGTGGATTAGGTATTGGTT 367 ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | Sbjct 322 GTGATGTGAGAATTTGGGTTACGAGAAAGATGAAGACTATTAGTGGATTAGGTATTGGGT 381 Query 368 TGAGTTT-A-G--T--GTTTCTTCTACTAGCACTTGTTGCAGAAGTCTATTACCTTCTGA 421 | ||||| | | | |||||||||| |||||||||||| ||||||||| || ||||| | Sbjct 382 TAAGTTTAATGTTTGGGTTTCTTCTATTAGCACTTGTTGGAGAAGTCTACTATCTTCTAA 441 Query 422 GATGgaagaagcacaagaagagagtcacaagccaagcgagtgaagaagagaaagaagaag 481 |||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 442 GATGTAAGAAGCACAAGAAGAGAGTCATAAGCCAAGAGAGTGAAGAAGAGAAAGAAGAAG 501 Query 482 aagaaC--C-AAACGGATACGCTAAAGAACTTATCCAGCTCTTCTGCTTCAAAAAGCCTC 538 || ||| | ||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 502 AACAACAACAAAACGGATACGCTAAAGAACTAATCCAGCTCTTCTGCTTCAAAAAACCTC 561 Query 539 AATCTCTGCAGCAAAACAATGGAGGAAGAGAAGGTGAAATCTCAATGAATCAAGATGGGA 598 |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 562 AATCTCTGCAGCAAAACAATGGAGGAAGAGAAGGTGAAGTCTCAATGAATGAAGATGGGA 621 Query 599 ATCCAGATTTGGAACTTGGGTTGATGAAACACTTGAATGGAGGAGATCTAGGGTTTGAAG 658 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 622 ATCCAGATTTAGAACTTGGGTTGATGAAACACTTGAATGGAGGAGATCTAGGGTTTGAAG 681 Query 659 CAGAGCTTATGAAGCTTCATAACCAGAGGTTTCTATTCACAATCATGGAAGAGACAAAAG 718 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 682 CAGAGCTTATGAAGCTTCATAACCAGAGGTTTCTATTCACAATCATGGAAGAGACAAAAG 741 Query 719 CAGATTTGGAATCTGATGATGGTAGCAAATCAAGATTAGGTTCAAGATCAAGAAGAAGAA 778 |||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||| Sbjct 742 CAGATTTGGAATCTGAAGATGGGGGTAAATCAAGATTAGGTTCAAGATCAAGAAGAAGAA 801 Query 779 GCTTGAGTGATGTTCCTAATGACTGTAATACCCCTGGATTCACTCCATTGGCTTCTCCAA 838 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 802 GCTTGAGTGATGTTCCTAATGACTGTAATACCCCTGGATTCACTCCATTGGCTTCTCC-- 859 Query 839 CTACACTAAAGTC-T--TCTCCTTTGGAGTCTTATCCACACCATGGATTCAATCCTCTGT 895 || | |||||| | |||||| |||||||||||||||||||||||||||||||||||| Sbjct 860 -TA-A--AAAGTCATCATCTCCTCTGGAGTCTTATCCACACCATGGATTCAATCCTCTGT 915 Query 896 TTGAATCAGACGGTGAGCTTGAGTTTAACAAGTTTTTCAGGTCGTCTTCTTCACCTCCAC 955 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 916 TTGAGTCAGACGGTGAGCTTGAGTTTAACAAGTTTTTCAGGTCCTCTTCTTCACCTCCAC 975 Query 956 CGAAGTTTAAGTTCAtgagagatgctgaagagaagctaaggaagagattgattgaagaag 1015 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 976 CGAAGTTTAAGTTCATGAGAGATGCTGAAGAGAAGCTAAGGAAGAGATTGATTGAAGAAG 1035 Query 1016 ccagaagaagagaagGGTTAGCTTCGGTTGTAACACAAGGTTCGTTTTTGAAGTTCATGA 1075 ||| |||||||||| | || || |||||||| ||||||||||| | ||||| |||| Sbjct 1036 CCAAAAGAAGAGAAC--T---CT-CGATTGTAACAGAAGGTTCGTTTCTCAAGTTTATGA 1089 Query 1076 ATCCTGCAATGAACAGAGAGAAGAAACAGAGTATTCAAGAATCTGATGAAACGGTGTCGT 1135 ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1090 ATCCTGCGATGAACAGAGAGAAGAAACAGAGTATTCAAGAATGTGATGAAACGGTGTCGT 1149 Query 1136 TTTCTCCTTCTTCTTC---ATCAGGTACAACAA--A----TCTTAGAACGTTAGTGGTTG 1186 |||||||||||||||| |||||||||||||| | |||||||||||||||||||| Sbjct 1150 TTTCTCCTTCTTCTTCCTCATCAGGTACAACAATTACAAATCTTAGAACGTTAGTGGTTG 1209 Query 1187 tttagttttagcatctct-t---ttta-------a-ttttt------ggttgaaatttt- 1227 |||||| ||||||||||| | |||| | ||||| ||||||| |||| Sbjct 1210 TTTAGTATTAGCATCTCTGTGGCTTTACTCTTTTAATTTTTATTTTTGGTTGAATTTTTG 1269 Query 1228 tttc-aagaatttcaattttatttGTGTGAAAATTCTATCTTTCCTTTCTCTCGTTCTTG 1286 |||| || |||||||||| |||| ||||||||||||||||||||||||||||| |||||| Sbjct 1270 TTTCCAAAAATTTCAATTATATT-GTGTGAAAATTCTATCTTTCCTTTCTCTCATTCTTG 1328 Query 1287 TTTTTTGGGAATGATTTTCTTCTGTACGTATGAATCTGAAAAATTT-GCAGATGCTTGTT 1345 || ||| |||||||||| ||||||||||||| ||||||||| ||| ||||||||||||| Sbjct 1329 TTATTTAGGAATGATTT-CTTCTGTACGTATCAATCTGAAATTTTTTGCAGATGCTTGTT 1387 Query 1346 TTAATTTCGTCTAAGAA 1362 || ||||||||||||| Sbjct 1388 TTGTTTTCGTCTAAGAA 1404 Score = 204 bits (110), Expect = 2e-51 Identities = 168/193 (87%), Gaps = 15/193 (8%) Strand=Plus/Plus Query 1 AAGTATAACAAAGAACCCAACTTGTGAACCTAAATTGCTTTGAAAGAGA-AGTTCTTTTC 59 ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| || Sbjct 1 AAGTATAACAAAGAACCCAACTTGTGAACCTAAATTGCTGTGAAAGAGATCGTTCTTCTC 60 Query 60 TCTGTTTCACTTAAAATAAGATAGCACaaaaaaaaaaaaaaaaaaaaaaaCTGTCTTTCT 119 |||||||||| | ||| | || | | | | || |||| ||||||||||| ||||||| Sbjct 61 TCTGTTTCACAT-AAA-AGGA-A--A-ACATAAGAAAAGAAAAAAAAAAA---TCTTTCT 111 Query 120 CTTT--CAATCTTAATTTCTCTGCTCACCATCAAGGCAAGTTTCCTTCTTTTGCTCCTCT 177 |||| ||||||||| || |||||||||||||||||||||||||||||||||| ||||| Sbjct 112 CTTTCACAATCTTAA-TT-TCTGCTCACCATCAAGGCAAGTTTCCTTCTTTTGATCCTC- 168 Query 178 AACAATTTCCATT 190 ||||||||||||| Sbjct 169 AACAATTTCCATT 181 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67067928120 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5