BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496067
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59400.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1574 0.0
AT5G59410.1 | Symbols: | Rab5-interacting family protein | chr... 150 2e-35
> AT5G59400.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING:
13 growth stages; BEST Arabidopsis thaliana protein match
is: PGR5-like B (TAIR:AT4G11960.1); Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses -
0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:23957745-23959632
FORWARD LENGTH=1031
Length=1031
Score = 1574 bits (852), Expect = 0.0
Identities = 976/1034 (94%), Gaps = 15/1034 (1%)
Strand=Plus/Plus
Query 9 ATTTGTTGTC-CATGGCGGGTACTTGCACTTCAATTAGGCCTCGTCTCATTGGCTCTTCT 67
|||||||| | |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATTTGTTG-CTGATGGCGGGTACTTGCACTTCGATAAGGCCTCGTCTCATTGGCTCTTCT 59
Query 68 TCAATTGTTGAGCTTTCCAGGTTGATTAATCGAGCTGGAGTTCCTTTCTCTGTACGAATC 127
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 TCAATTGTTGAGCTTTCAAGGTTGATTAATCGAGCTGGAGTTCCTTTCTCTGTACGATTC 119
Query 128 TCTACCAGAACCAGAGCTCTCCACGGTGGTGGTTTAACCGCACCTACCTCTCGTGAGGAA 187
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TCTACAAGAACCAGAGCCCTCCACGGTGGTGGTTTAACCGCACCTACCTCTCGTGAGGAA 179
Query 188 GGTCCTTCTTGTATCTTCGTTGGACCGATTGATTCTGCTCGCAAAGAAACTCTAGAAGCT 247
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 GGTCCTTCTTGTATCTTCGTTGGACCTATTGATTCTGCTCGCAAAGAAACTCTAGAAGCT 239
Query 248 CTTTATCGCCAAGCTAAGGATGCGTATTACAATGGCAAGCCTTTGATAGTTGATGACATG 307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CTTTATCGCCAAGCTAAGGATGCGTATTACAATGGCAAGCCTTTGATAGTTGATGACATG 299
Query 308 TTTGACAGAGTTGAGCTAAAGCTTCGGTGGTATGGTTCAAAATCTGTCGTCAAGTACCCT 367
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 300 TTTGACAGAGTTGAGCTAAAGCTTCGGTGGTATGGTTCAAAATCTGTTGTCAAGTATCCT 359
Query 368 CGGTGTAGTCTACTGAGACAGTCAACTTATGCTGATGCAGAGGATGATGCATCACAAGTT 427
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 360 CGGTGTAGTCTACTAAGACAGTCAACATATGCTGATGCAGAGGATGATGCATCGCAAGTT 419
Query 428 CTCCTGTTAGCTACCATATGGATCT-TGATTTTCTTATTTGGTAGCTCGGCATGTGTTTT 486
||||||||||||||| ||||||| | ||||||||||||||||||| ||||||||||||||
Sbjct 420 CTCCTGTTAGCTACCGTATGGAT-TATGATTTTCTTATTTGGTAGTTCGGCATGTGTTTT 478
Query 487 GCTCACGATGTATGGCCTTGGCCTAGTTTATGGAGGAGATCCGGTCGACTCAGGGCTTGT 546
| |||||| |||||| | ||||| |||||||||||||||||| | ||||||||||||||
Sbjct 479 ACCCACGATATATGGCGTCGGCCTGGTTTATGGAGGAGATCCGTTTGACTCAGGGCTTGT 538
Query 547 CTATAGCAGTCAGTTGTCATCTTCTGTGCCTCTTTTGTCAAAGTTTAACGGCATCCTCCT 606
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 539 CTATAGCAGTCAGTTGTCATCTTCTGTGCCTATTTTGTCAAAGTTTAATGGCATCCTCCT 598
Query 607 CACCGTGCTAGGACCTGCTTTTGGATATCCGATTTCATCTTCTGCAGTAAGAGTACTTAA 666
| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 599 CTCCGTGCTAGGGCCTGCTTTTGGATATCCGATTGCATCTTCTGCAGTAAGAGTACTTAA 658
Query 667 AGGGTTATGGAGAAATGACTTAACGGCTCTAAAAGGAGACTGCCCGAATTGCGGGGAAGA 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 AGGGTTATGGAGAAATGACTTAACGGCTCTAAAAGGAGACTGCCCGAATTGCGGGGAAGA 718
Query 727 GGTTTTCGCGTTTGTGAGATCCGATCAATCAAACCGATCAGCTCACAAAGCCGACTGTCA 786
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 719 GGTTTTCGCATTTGTGAGATCCGATCAATCGAACCGATCAGCTCACAAAGCCGACTGTCA 778
Query 787 TGTCTGTGAGTGCACACT-GGAGTTCCGTACCAAAGTAGAG--A-A-A--TCTACATCAC 839
||||||||||||||| || |||||||||||||||||||||| | | | ||| | ||||
Sbjct 779 TGTCTGTGAGTGCAC-CTTGGAGTTCCGTACCAAAGTAGAGGTAGATAAATCTGCCTCAC 837
Query 840 GATTGGGTAGAAAATGGGTTTACGGCAGGATATACCTTGTTTCACGGCCAAGGAGAGATC 899
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 838 GATTGGGGAGAAAATGGGTTTACGGTAGGATATACCTTGTTTCACGGCCAAGGAGAGATC 897
Query 900 GGCGTTCCAAGATTACATAATTCTGACAAAAGAAGAAAGATTTTTTGGGGATGGTGTCTA 959
||||||| ||| |||||||||||| ||||||||||||||||||||| |||||||| ||||
Sbjct 898 GGCGTTCAAAGTTTACATAATTCTAACAAAAGAAGAAAGATTTTTTTGGGATGGTTTCTA 957
Query 960 CTCAATTGTGTATTGTAAAAAGGATACTA--GAAAGCTTTTGTAACATGCAGAAGATTCG 1017
||||||||||||||||||||| ||||||| ||||||||||||||||| || |||||||
Sbjct 958 CTCAATTGTGTATTGTAAAAATGATACTATAGAAAGCTTTTGTAACATTCAAAAGATTCA 1017
Query 1018 TAAAA-TTGTTACT 1030
||||| ||||||||
Sbjct 1018 TAAAAATTGTTACT 1031
> AT5G59410.1 | Symbols: | Rab5-interacting family protein | chr5:23959573-23960878
REVERSE LENGTH=729
Length=729
Score = 150 bits (81), Expect = 2e-35
Identities = 99/107 (93%), Gaps = 4/107 (4%)
Strand=Plus/Minus
Query 974 GTAAAAAGGATAC--TAGAAAGCTTTTGTAACATGCAGAAGATTCGT-AAAATTGTTACT 1030
||||||| ||||| ||||||||||||||||||| || ||||||| | ||||||||||||
Sbjct 729 GTAAAAATGATACTATAGAAAGCTTTTGTAACATTCAAAAGATTCATAAAAATTGTTACT 670
Query 1031 ATAACGTTTTTGTCTCTTGTAGCCTTATCTTCAGACAGTTTACAAAA 1077
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 669 ATAACG-TTTTGTCTCTTGTAGCCTTATCTTCAGACAGTTTACAAAA 624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52760772795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5