BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496108
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59750.2 | Symbols: | DHBP synthase RibB-like alpha/beta do... 2004 0.0
> AT5G59750.2 | Symbols: | DHBP synthase RibB-like alpha/beta
domain;GTP cyclohydrolase II | chr5:24073295-24075475 FORWARD
LENGTH=1798
Length=1798
Score = 2004 bits (1085), Expect = 0.0
Identities = 1198/1253 (96%), Gaps = 5/1253 (0%)
Strand=Plus/Plus
Query 454 AGTTTGTGATCGTTGTTGACGATGAAAATGGGGATGTTGAAGGGAATCTGATTATGGCGG 513
||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |
Sbjct 548 AGTTTGTGATCGTTGTTGACGATGAAACCGGAGATGTTGAAGGGAATCTGATCATGGCTG 607
Query 514 CATCTCTAACGAGTCCAAAAGATATAGCCTTTCTGATTAAGAATGGTTCTGGAATTGTCT 573
|| |||| |||||||||||||| ||||| |||||||||||||||||||| || |||||||
Sbjct 608 CAACTCTTACGAGTCCAAAAGACATAGCTTTTCTGATTAAGAATGGTTCAGGTATTGTCT 667
Query 574 CAGTTGGGATGAAGAAAGAATACCTCGAAAGATTAAGCCTTACACTCATGTCACCTGAAA 633
||||||| |||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 668 CAGTTGGTATGAAGAAAGAAAACCTTGAAAGATTAAGCCTTACACTTATGTCACCTGAAA 727
Query 634 TGGAAGACGAAGATTCCTCTGCTCCAACTTTCACTATCACTGTGGATGCAAAATCCGGAA 693
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 728 TGGAAGACGAAGATTCCTCTGCTCCAACTTTCACCATCACTGTGGATGCAAAATCTGGAA 787
Query 694 CATCAACTGGAGTATCAGCTTCAGACAGGGCGATGACGGTTCTTGCACTTTCGTCCCTCG 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 788 CATCAACTGGAGTATCAGCTTCAGACAGGGCGATGACGGTTCTTGCACTTTCGTCTCTCG 847
Query 754 AAGCTAAACCAGATGATTTCAGGAGGCCTGGTCATGTATTCCCTCTCAAGTACAGAGATG 813
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 ATGCTAAACCAGATGATTTCAGGAGGCCTGGTCATGTATTCCCTCTCAAGTACAGAGATG 907
Query 814 GTGGAGTTTTAAGGAGAGCCGGTCACACTGAAGCTTCAGTGGATCTAATGATATTGGCTG 873
||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 908 GTGGAGTTTTAAGGAGAGCTGGTCACACCGAAGCTTCAGTGGATCTAATGATATTGGCTG 967
Query 874 GTTTACGTCCTGTCTCTGTTCTTTCAGCTATTCTTGATCAAGAAGATGGGTCAATGGCTT 933
|||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 968 GTTTACGTCCCCTCTCTGTTCTTTCAGCTATTCTTGATCAAGAAGATGGGTCTATGGCTT 1027
Query 934 CACTACCTTATATGAAAAAGCTTGCTACAGAACATGACATTCCCATTGTATCGTTGACTG 993
|||| || |||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 1028 CACTGCCGTATATGAAAAAGCTTGCTACGGAACATGATATCCCCATTGTATCGTTGACTG 1087
Query 994 ATCTAATCAGATATCGAAGAAAGCGAGATAAGCTTGTGGAGAGAATCACGGTGTCTCGTT 1053
|| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1088 ATTTAATCAGATATCGAAGAAAGCGAGATAAGCTTGTTGAGAGAATCACAGTGTCTCGTT 1147
Query 1054 TGCCTACCAAATGGGGTCTTTTCCAAGCTTATTGTTATCGATCTAAACTCGATGGAACCG 1113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 TGCCTACCAAATGGGGTCTTTTCCAAGCTTATTGTTATCGATCTAAACTCGATGGAACCG 1207
Query 1114 AGAATATCGCCCTCGTTAAAGGAAACGTTGGAAATGGTGAGGACATTCTGGTACGAGTGC 1173
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 1208 AAAATATCGCCCTCGTTAAGGGAAACGTTGGAAATGGTGAGGACATTCTGGTGCGAGTGC 1267
Query 1174 ATTCAGAGTGCTTAACAGGAGACATTTTTGGCTCAGCGCGGTGTGACTGTGGAAACCAAT 1233
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1268 ATTCAGAGTGCTTGACAGGAGACATTTTTGGCTCAGCACGGTGTGACTGTGGAAACCAAT 1327
Query 1234 TGGATC-TAGCCATGGAGCTAATCGAGAAAGAGGGAAGAGGAGTCGTTGTGTATCTTCGT 1292
|||| | ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1328 TGGA-CTTAGCCATGGAGTTAATCGAGAAAGAGGGAAGAGGAGTTGTTGTGTATCTCCGT 1386
Query 1293 GGCCACGAAGGAAGAGGCATTGGCCTTGGTCACAAGCTTAGAGCTTATAACTTGCAGGAC 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1387 GGCCACGAAGGAAGAGGCATTGGCCTTGGTCACAAGCTTAGAGCTTATAACTTGCAGGAC 1446
Query 1353 GAAGGACACGACACTGTTCAGGCCAATGTTGAACTTGGCCTATCCATTGATTCTCGTGAA 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1447 GAAGGACACGACACTGTTCAGGCCAATGTTGAACTTGGCCTATCCATTGATTCTCGTGAA 1506
Query 1413 TACGGTATCGGTGCTCAGATGCTAAGGGACATAGGAGTGAGAACAATGAGACTGATGACG 1472
|||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||
Sbjct 1507 TACGGTATCGGTGCTCAGATGCTACGAGACATAGGAGTGAGAACAATGAGACTAATGACG 1566
Query 1473 AATAACCCCGCCAAGTTCACAGGTCTGAAAGGGTACGGACTCGCTGTAGTTGGCCGTGTG 1532
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1567 AATAACCCTGCCAAATTCACTGGTCTGAAAGGGTACGGACTCGCTGTAGTTGGCCGTGTG 1626
Query 1533 CCAGTGGTGACACCAATCACCAAGGAGAACAGAAGATATATGGAGACCAAACGCAAGAAG 1592
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1627 CCGGTGGTGACACCAATCACCAAGGAGAACAGAAGATATATGGAGACCAAACGCAAGAAG 1686
Query 1593 ATGGGTCACATTTATATCTCTGATAACAACGATCAGCCTTTGGCTTGACC-AAAAGCCTT 1651
|||||||||||||||||||||||||||||||||||||| || |||||||| |||||| ||
Sbjct 1687 ATGGGTCACATTTATATCTCTGATAACAACGATCAGCCATTAGCTTGACCCAAAAGCTTT 1746
Query 1652 TGATAGAAACGA-ACACTTTTGAATTTTGTATTTATAAATTGATTCATTCTTA 1703
|||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1747 TGATAGAAAC-ACACACTTTTGAATTTTGTATTTATAAATTGATTCATTCTTA 1798
Score = 521 bits (282), Expect = 7e-147
Identities = 408/463 (88%), Gaps = 31/463 (7%)
Strand=Plus/Plus
Query 19 AATTCTT-AAATTTTCAGATTTGGGTTTTGTGTTGAAAACAACTCCAAGGAGACGAGAAG 77
|||| || |||||||||||||| ||||||||||||| ||||||||||| |||||||||||
Sbjct 1 AATT-TTAAAATTTTCAGATTTTGGTTTTGTGTTGAGAACAACTCCAAAGAGACGAGAAG 59
Query 78 CCGAGCGAATCGTACGAAG-AAAGAGATATATGTTTCATTACGTAGATGATGGATTCTGC 136
| ||||||||||||| || | |||||||||||||||||||||| |||||||||||||||
Sbjct 60 -C-AGCGAATCGTACG-AGCAGAGAGATATATGTTTCATTACGTCGATGATGGATTCTGC 116
Query 137 TTTATATCATCATCCTCGAATCTTTTTCGCTCACAGCTTCATCAATGGCTCGTATAGGTC 196
|| ||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 117 -TT-TAT-ATCATCCTCGAATCTTTTTCGCTCACAGCTTCATCAATGGCTTGTATAGTTC 173
Query 197 ACCTATGTTTGCTAATACTTGCTGGAGATTGAGTGA-TGGTTCACGTTGGAAGATCAAGG 255
|||| ||||||||||||||||||||||||| || | | ||||| ||||| |||||||||
Sbjct 174 TCCTAGGTTTGCTAATACTTGCTGGAGATTG-GTTAGTCGTTCAAGTTGGGAGATCAAGG 232
Query 256 CTAGTGAGAATAGTGATCGCAACGTGTTCGACGAAAGTCCTGTGAGAGGAA-CCGACGAG 314
|||||||||||||||||||||| |||||||| |||| |||||| || | || |||||| |
Sbjct 233 CTAGTGAGAATAGTGATCGCAATGTGTTCGATGAAAATCCTGTTAG-GAAAACCGACGGG 291
Query 315 TCGTTGTTTGATTCTG-TT-G----A--C-G----CG-G-AAATCACTCCTGAGACTGAT 359
|||||||||||||||| || | | | | || | ||||||| ||||||||||||
Sbjct 292 TCGTTGTTTGATTCTGCTTCGTTTGAGACAGTTGACGCGGAAATCACGCCTGAGACTGAT 351
Query 360 GATTTCTTTGTGAGTGACGCAGAGGGTGATCCAGATTGTCCTTCTCAAGGTTATTCCTCT 419
|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 352 GATTTCTTCGTGAGTGACGCAGAGGGTGATCCAGATTGTCCTACTCAAGGTTATTCCTCT 411
Query 420 GTTGAA-TATGCTCTTCAAGCTTTACGCAAAGGAAAG-TTTGT 460
||||| | ||||||||||||| |||||||||||||| |||||
Sbjct 412 ATTGAACT-TGCTCTTCAAGCTCTACGCAAAGGAAAGGTTTGT 453
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85943333040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5