BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496112
Length=983
Score E
Sequences producing significant alignments: (Bits) Value
AT5G59780.3 | Symbols: MYB59, ATMYB59-3 | myb domain protein 59... 1421 0.0
> AT5G59780.3 | Symbols: MYB59, ATMYB59-3 | myb domain protein
59 | chr5:24082197-24083424 REVERSE LENGTH=1010
Length=1010
Score = 1421 bits (769), Expect = 0.0
Identities = 919/985 (93%), Gaps = 36/985 (4%)
Strand=Plus/Plus
Query 10 agagagttagagaaagagaaagagaTGAAACTTGTGCAAGAAGAATACCGTAAAGGACCG 69
|||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 51 AGAGAGAGAGAGAGAGAGAGAGAGATGAAACTTGTGCAAGAAGAATACCGTAAAGGACCG 110
Query 70 TGGACAGAACAGGAGGACATCCTCTTGGTCAACTTTGTCCACTTGTTCGGAGATCGAAGA 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 TGGACAGAACAGGAGGACATCCTCTTGGTCAACTTTGTCCACTTGTTCGGAGATCGAAGA 170
Query 130 TGGGATTTTGTAGCGAAAGTTTCAGGTTTAAACAGAACAGGAAAGAGTTGCAGGTTAAGG 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TGGGATTTTGTAGCGAAAGTTTCAGGTTTAAACAGAACAGGAAAGAGTTGCAGGTTAAGG 230
Query 190 TGGGTTAATTACCTGCATCCTGGTCTCAAACGTGGTAAGATGACTCCACAAGAAGAGCGT 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 TGGGTTAATTACCTGCATCCTGGTCTCAAACGTGGTAAGATGACTCCACAAGAAGAGCGT 290
Query 250 CTAGTCCTTGAGCTTCACGCCAAATGGGGAAACAGATGGTCAAAAATCGCCCGTAAATTG 309
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||
Sbjct 291 TTAGTCCTTGAGCTTCACGCCAAATGGGGAAACAGGTGGTCAAAAATTGCCCGGAAATTA 350
Query 310 CCGGGAAGAACGGATAACGAGATAAAGAATTACTGGAGGACTCATATGAGGAAGAAGGCT 369
||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 351 CCGGGGAGAACAGATAATGAGATAAAGAACTACTGGAGGACTCATATGAGGAAGAAGGCT 410
Query 370 CAAGAGAAGAAGCGACCTATGTCTCCAACTTCTTCATCTTCAAACTGCTGCTCATCATCT 429
|||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 411 CAAGAGAAGAAGCGACCTATGTCTCCTACTTCCTCATCTTCAAACTGTTGCTCATCATCT 470
Query 430 ATGACCACTACTACTACTCAGGACACTGGCGGCTCCAATGGGAAAATGAATCAAGAATGC 489
|||||||||||||||| ||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 471 ATGACCACTACTACTAGTCAAGACACTGGAGGCTCCAACGGGAAAATGAATCAAGAATGC 530
Query 490 GAAGACGGATATTACTCGATGGATGACATATGGAGAGAGATTGATCAGTCTGGAGCAAAC 549
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 GAAGACGGGTACTACTCCATGGATGACATATGGAGAGAGATTGATCAGTCTGGAGCAAAC 590
Query 550 ATTATTAAACCGGTAAAAGACATCTACTACTCAGAGCAAAGCTGTTACTTGAATTTCCCT 609
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 591 GTTATTAAACCGGTAAAAGACAACTACTACTCAGAGCAAAGCTGTTACTTGAATTTCCCT 650
Query 610 CCTCTGGCTTCTCCAACATGGGAAAATTCCTTGGAATCTATATGGAACATGGATGCAGAT 669
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 651 CCTCTGGCTTCTCCAACATGGGAAAGTTCCTTGGAATCTATATGGAACATGGATGCAGAT 710
Query 670 GAAAGTAAGATGTCTTCTTTTGCTATTGATCAGTTTCCTCTAAGTTTTGAACATGGTAGA 729
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 GAAAGTAAGATGTCTTCTTTTGCTATTGATCAGTTTCCTCTAAGTTTTGAACATGGTAG- 769
Query 730 TCATCGTGGTCGTCTATATAAGTCTAGGATTTGATTCATTTGGAATGTTTATATGTGCAG 789
| | | ||| || | || |||||||||||||||||||||||||||||||||||||||
Sbjct 770 T----G-G-TCGCCT-T-TA-GTCTAGGATTTGATTCATTTGGAATGTTTATATGTGCAG 820
Query 790 CATATATATGTTATCAAACGAC---TGTAGTAGTTTTCC-ATGACTTACATCAGAAA-C- 843
|||||||||||||||||||||| ||||||||||| || ||||||||||||| ||| |
Sbjct 821 CATATATATGTTATCAAACGACGACTGTAGTAGTTT-CCTATGACTTACATCAAAAATCA 879
Query 844 C-AC----TGTACTAATCTCATATGTAGTCATCATCATCCTATGCCTTTGTTTAGTTTGT 898
| || ||||||||||||||| |||||||||||| | ||||||||||||||||||||
Sbjct 880 CCACCCACTGTACTAATCTCATAAGTAGTCATCATC-T--TATGCCTTTGTTTAGTTTGT 936
Query 899 AGAGCGAGTGAAAAGAACACTGTGTAATACTACAAGTCAGAACTCGATCTATTTCCAAAA 958
|||| ||||||||||| |||||||||| | | |||||||||| | ||||||||||
Sbjct 937 AGAGTGAGTGAAAAGA----TGTGTAATAC-A-A-GTCAGAACTC--T--ATTTCCAAAA 985
Query 959 TAAATAGACTTTTGAAGTTTCTGTG 983
|||||||||||||||||||||||||
Sbjct 986 TAAATAGACTTTTGAAGTTTCTGTG 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48124312826
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5