BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496115 Length=1239 Score E Sequences producing significant alignments: (Bits) Value AT5G59800.1 | Symbols: MBD7, ATMBD7 | methyl-CPG-binding domain... 1480 0.0 > AT5G59800.1 | Symbols: MBD7, ATMBD7 | methyl-CPG-binding domain 7 | chr5:24094474-24096532 REVERSE LENGTH=1309 Length=1309 Score = 1480 bits (801), Expect = 0.0 Identities = 1105/1240 (89%), Gaps = 67/1240 (5%) Strand=Plus/Plus Query 43 CACACTCATCTCGGGTTTTTGGGTTAGACCCGGCAACGAAGCGATGCAGACGAGATCCTC 102 ||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 68 CACTCTCGTCTCGGGCTTTTGGGTTAGACCCGGCAACGAAGCGATGCAGACGAGATCCTC 127 Query 103 TTCCTCACCCTCGCCTGACCACCGCCGCGAAAGCCAGCTGCAAATCGCCGATCCCACTTC 162 |||||| || ||| || ||||||||||||||| |||| |||| ||||| |||||||| || Sbjct 128 TTCCTCTCCTTCGGCTAACCACCGCCGCGAAACCCAGTTGCAGATCGCGGATCCCACCTC 187 Query 163 GTTTTGCGGCAAGATTTTACCTGGTTGGACCGTCGTGAATCGGCCGCGATCTAGCAGA-A 221 |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| | | Sbjct 188 GTTTTGCGGCAAGATTATGCCTGGTTGGACCGTCGTGAATCGGCCGCGATCTAGCA-ACA 246 Query 222 ACGGCAG-TGTTGATACGTACTTTATCGAGCCAGGGACTGGTAGACAGTTTTCATCTCTA 280 |||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 247 ACGG-TGTTGTTGATACGTACTTTATCGAGCCAGGGACTGGTAGACAGTTTTCATCACTA 305 Query 281 GAAGCTATTCACAGACACTTGGCTCGAGAAGTAAATGACAAACGTTTGACTCGAGCAGGA 340 |||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||| Sbjct 306 GAAGCTATTCACAGACACTTGGCTGGAGAAGTAAATGACAGACGCTTGACTCGAGCAGGA 365 Query 341 TCCTTCTTCCAGGA-AAGGACTAGGGTTTATGAAGGATTAAGAACCAAACAAAAACAGGA 399 ||||| |||||||| || ||| |||||||||||||||| ||||| | | |||||||| Sbjct 366 TCCTTTTTCCAGGACAA-GACAAGGGTTTATGAAGGATCAAGAA-C---C--AAACAGGA 418 Query 400 TCACCGCAGAGTTGAATATGCCTCCAAAGGTTTCCGATTGCCTAGAGGATGGTCTGTTGA 459 |||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 419 TCACTGCGGAGTTGAATATGCCTCCAAAGGTTTCCGATTGCCTAGAGGATGGTCCGTTGA 478 Query 460 GGAGGTTCCGAGGAAAAACTCTCATTATATTGATAAGTATTATGTTGAGCGAAAAACAGG 519 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GGAGGTTCCGAGGAAAAACTCTCATTATATTGATAAGTATTATGTTGAGCGAAAAACAGG 538 Query 520 AAAGCGCTTCCGTTCTCTTGTTTCCGTTGAGAGATACTTAAGAGAATCC-GGTAAC-CGT 577 ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | | Sbjct 539 AAAGCGCTTCCGTTCTCTTGTTTCCGTTGAGAGATACTTAAGAGAATCCCGG-AACTC-T 596 Query 578 ACAGATCAGCAGCTTATGCTTTTACAGAATCGCCGAGGCCATTCCAAAGATTTCAGTTTA 637 | ||| |||||||||| | |||||||||||||||| |||||||||||||||||||| ||| Sbjct 597 ATAGAGCAGCAGCTTAGGGTTTTACAGAATCGCCGTGGCCATTCCAAAGATTTCAGGTTA 656 Query 638 CCTGATGGATGGATCATTGAGGAGAAACCGCGAAGAAATTCCAGTCATATAGACAGGTCT 697 ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| Sbjct 657 CCTGATGGATGGATCGTTGAGGAGAAACCGCGAAGAAGTTCCAGTCATATAGACAGGTCA 716 Query 698 TATATTGAGCCAGGAACAGGGAATAAATTCCGTTCCATGGCAGCCGTTGAGAGATACTTG 757 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 TATATTGAGCCAGGAACAGGGAATAAATTCCGTTCCATGGCAGCCGTTGAGAGATACTTG 776 Query 758 CA-AGCAGTCGAGAACAGTACAGTTGAC---------ATGGTGCATTCCGAGCGGCTTGC 807 | | |||||| ||||| |||| ||||| ||||||||||| ||||||||| | Sbjct 777 -ATATCAGTCGGGAACATTACACTTGACTCGGTTTCTATGGTGCATTCGGAGCGGCTTCC 835 Query 808 TCTTCTGATGAACCGGAATGGTACCAGATTTCAGAACGAAGTTATCGACCCAAACCCACC 867 ||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||| Sbjct 836 TCTTCTGATGAACCGGAATGGTATCAGATTTCAGAGCGAAGTTATTGACCCAAACCCACC 895 Query 868 GAAGAAAGTTAAGTGGGTCCTTACCGGT-CCAGGCGGAGACAAGTTTACTGCGAATGTAA 926 ||||||||| |||||||| ||||||||| || |||||| ||| ||| |||||||||||| Sbjct 896 GAAGAAAGTAAAGTGGGTTCTTACCGGTTCC-GGCGGAAACATGTTCACTGCGAATGTAC 954 Query 927 GCGGATCGGATGTCTCTAGCTTGGTTAAACAGACATGGTCCGAGGCGTTTGTTTCACTAA 986 |||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||| | Sbjct 955 GCGGATCGAATGTCTCTAGCTTGGTTAAACATACATGGTCCGAGGCATTTGTTTCACTGA 1014 Query 987 TCCAAGACCGCTCTTAACCGATATCTGAATCCTAGGTTTATCAATTTGGTTTACGGTTAA 1046 || |||||||||||||||||| | || | ||||| ||||||| |||||||||||| Sbjct 1015 TCGAAGACCGCTCTTAACCGA-A-CT-A------GGTTTGTCAATTTAGTTTACGGTTAA 1065 Query 1047 CAAGAGCTAGTTC-A-T----A--CT-TT---G----------G-TCTAGTTTATAACTG 1083 ||||||||| ||| | | | || || | | ||||||||||||||| Sbjct 1066 CAAGAGCTAATTCCAGTCGGTAGTCTGTTCAAGTTCATACTTCGGTCTAGTTTATAACTG 1125 Query 1084 ACCCAAATAACCGG-TTTTGCCAAATTTTTCAAGTTCATATTCG-TGTGAACCGGATTTT 1141 |||||||||||||| |||| ||||| ||||||| |||||||||| ||||||||||||||| Sbjct 1126 ACCCAAATAACCGGCTTTT-CCAAAATTTTCAATTTCATATTCGGTGTGAACCGGATTTT 1184 Query 1142 GGTAATTCGTGCAGGTATGTTAGTGCTCATATTAAGTTTGGGGACTTTAAAT-CGGA-TG 1199 ||| ||||| ||||||||||||||||||||||||||||||||||||| |||| || | | Sbjct 1185 GGTTATTCGGGCAGGTATGTTAGTGCTCATATTAAGTTTGGGGACTTAAAATTCGAAGTT 1244 Query 1200 GTGGTGTAGTAAGGTGTAAATAATGGTTGAAATTTTCAAG 1239 || |||||||||||||||||||||||| ||| || |||| Sbjct 1245 GTC-TGTAGTAAGGTGTAAATAATGGTTCAAAATTCCAAG 1283 Score = 73.1 bits (39), Expect = 6e-12 Identities = 41/42 (98%), Gaps = 0/42 (0%) Strand=Plus/Plus Query 1 CGTTACGTAAAAGCAGTGACAGAGAAATAAGAAGTGTGTGTG 42 |||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 CGTTACGTGAAAGCAGTGACAGAGAAATAAGAAGTGTGTGTG 42 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60893261085 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5