BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496192
Length=3035
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60450.1 | Symbols: ARF4 | auxin response factor 4 | chr5:24... 3895 0.0
> AT5G60450.1 | Symbols: ARF4 | auxin response factor 4 | chr5:24308322-24312698
REVERSE LENGTH=3114
Length=3114
Score = 3895 bits (2109), Expect = 0.0
Identities = 2494/2669 (93%), Gaps = 70/2669 (3%)
Strand=Plus/Plus
Query 279 TTTGCTTCTTCTTTGTGAAATTTA-CTTG-AAAAGGAGAAGAATTCTGAATTCTGTCACT 336
||||| |||||||||||||||||| | || ||||||||| |||||| |||||||||||||
Sbjct 328 TTTGCCTCTTCTTTGTGAAATTTAGC-TGAAAAAGGAGAGGAATTCCGAATTCTGTCACT 386
Query 337 TC-AAGCTCAAATTTTGCCAACTTTCCTTTGATGGGTTTTACTTGTTTTGTTGTAATTTG 395
|| |||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 387 TCAAAGCTCGAATTTTGCAAACTTTCCTTTGATGGGTTTTACTTGTTTTGTTGTAATCTG 446
Query 396 ATTAAAAATAGAAActttttgtttttttttctt-tcttcttgt-ctcctt---------- 443
||||||||||||||||||||| |||| ||||| ||| ||| | || |||
Sbjct 447 ATTAAAAATAGAAACTTTTTG--TTTTCTTCTTGTCTCCTTTTGCT-CTTAAAAGAGAAG 503
Query 444 -tttttcAATGGAATTTGACTTGAATACTGAGATTGCGGAGGTGGAAGAGGAAGAGAATG 502
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 504 CTTTTTCAATGGAATTTGACTTGAATACTGAGATTGCGGAGGTGGAAGAGGAGGAGAATG 563
Query 503 ATGA--T----GTAGGAGT---AGGAGGAACAAGAATTAACAGGGGTAGGCTTGGAATTT 553
|||| | |||||||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 564 ATGATGTAGGAGTAGGAGTAGGAGGAGGAACAAGAATTGACAAGGGTAGGCTTGGAATTT 623
Query 554 CACCGTCCTCTTCTTCTTCATGCTCTTCCGG---ATCA---TCATCATCTTCTACAGGCC 607
|||| || ||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 624 CACCATCTTCTTCTTCTTCATGCTCTTCCGGATCATCATCGTCATCATCTTCTACAGGCT 683
Query 608 CTGCATCTTCCATTTACTCTGAGCTGTGGCATGCTTGTGCTGGTCCTCTCACTTGTCTTC 667
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 684 CTGCATCTTCCATTTACTCTGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACTTGTCTTC 743
Query 668 CCAAGAAAGGCAATGTAGTTGTCTATTTCCCACAAGGTCATTTGGAGCAAGATGCTATGG 727
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 744 CCAAGAAAGGCAATGTAGTTGTCTATTTCCCTCAAGGTCATTTGGAGCAAGATGCTATGG 803
Query 728 TTTCTTATTCTTCTCCTCTTGAAATCCCCAAATTTGACCTTAATCCCCAAATCTTCTGCA 787
|||| ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 804 TTTCATATTCGTCTCCTCTTGAAATCCCCAAATTTGACCTTAATCCCCAAATCGTCTGCA 863
Query 788 GGGTGGTTCATGTCCAATTGCTTGCCAATAAGGAAACTGATGAGGTTTACACTCAAGTCA 847
|||||||| ||||||| |||||||| |||||||| || |||||||| |||||||||||||
Sbjct 864 GGGTGGTTAATGTCCAGTTGCTTGCTAATAAGGACACCGATGAGGTCTACACTCAAGTCA 923
Query 848 CTCTGCTTCCACTCCAAGAGTTTTCGATGCTAAATACGGAGGGGAAAGAGGTCAAGGAGT 907
||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 924 CTCTGCTTCCACTTCAAGAGTTTTCGATGCTAAATGGGGAGGGGAAAGAGGTCAAGGAGT 983
Query 908 TAGGAGGGGACGAAGAGAGGAACGGAAGCTCATCTGTCAAACGAACACCGCATATGTTCT 967
|||||||||| ||||||||||||||||||||||| ||||| || ||||| ||||||||||
Sbjct 984 TAGGAGGGGAGGAAGAGAGGAACGGAAGCTCATCCGTCAAGCGGACACCTCATATGTTCT 1043
Query 968 GCAAAACCTTAACAGCTTCTGACACAAGCACCCATGGAGGCTTCTCTGTACCTAGAAGAG 1027
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1044 GTAAAACCTTAACAGCGTCTGACACAAGCACACATGGAGGCTTCTCTGTACCTAGAAGAG 1103
Query 1028 CCGCTGAAGATTGTTTTGCTCCTCTTGACTACAAACAACAGAGGCCATCTCAAGAGCTCA 1087
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 CCGCTGAAGATTGTTTTGCTCCTCTTGACTACAAACAACAGAGGCCATCTCAAGAGCTCA 1163
Query 1088 TTGCAAAGGACCTCCATGGAGTAGAGTGGAAGTTTCGCCATATCTATAGAGGTCAACCAA 1147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 TTGCAAAGGACCTCCATGGAGTAGAGTGGAAGTTTCGCCATATCTATAGAGGTCAACCAA 1223
Query 1148 GGAGGCATCTACTCACCACTGGTTGGAGTATATTTGTTAGTCAAAAGAATCTAGCCTCTG 1207
||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |||||
Sbjct 1224 GGAGGCATCTACTCACCACTGGTTGGAGTATCTTTGTCAGTCAAAAGAATCTCGTCTCTG 1283
Query 1208 GTGATGCCGTTCTCTTTCTGAGAGACGAAGGTGGAGAGCTGAGATTAGGAATAAGAAGAG 1267
||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1284 GTGATGCGGTTCTCTTTCTGAGAGACGAAGGAGGAGAGCTGAGATTAGGAATCAGAAGAG 1343
Query 1268 CAGCAAGGCCAAGAAATGGACTTCCTGACTCAATCATTGAGAAGAACTCATGTTCGAACA 1327
||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1344 CAGCACGGCCAAGAAATGGACTTCCTGACTCAATCATTGAGAAGAATTCATGTTCAAACA 1403
Query 1328 TTCTGTCTCTTGTGGCTAATGCTGTATCTACAAAAAGCATGTTTCATGTGTTTTACAGTC 1387
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1404 TTCTGTCTCTTGTGGCTAATGCTGTATCTACAAAAAGCATGTTTCATGTGTTCTACAGTC 1463
Query 1388 CACGAGCGACGCATGCAGAGTTTGTGATTCCTTATGAGAAGTATGTCACAAGCATCAGGA 1447
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1464 CACGAGCGACGCATGCAGAGTTTGTGATTCCTTATGAGAAGTATATCACAAGCATCAGGA 1523
Query 1448 ATCCCATTTGCATAGGCACAAGATTCAGAATGCGATTTGAAATGGACGACTCTCCTGAGA 1507
||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1524 GTCCTGTTTGCATAGGCACAAGATTTAGAATGCGATTTGAAATGGACGATTCTCCTGAGA 1583
Query 1508 GAAGATGCGCTGGAGTAGTGACTGGAGTCTGTGACTTGGACCCGTATAGGTGGCCAAACT 1567
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1584 GAAGATGCGCTGGTGTAGTGACTGGAGTCTGTGACTTGGACCCGTATAGGTGGCCAAACT 1643
Query 1568 CTAAATGGAGGTGCTTGTTGGTGCGATGGGATGAGTCATTTGTGAGTGATCATCAAGAAA 1627
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1644 CTAAATGGAGGTGCTTGTTGGTGCGATGGGATGAGTCTTTTGTGAGTGATCATCAAGAAA 1703
Query 1628 GAGTTTCACCTTGGGAGATTGATCCCTCGATTTCTCTCCCACACTTAAGCATTCAGTCAT 1687
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 1704 GAGTTTCACCTTGGGAGATTGATCCCTCGGTTTCTCTCCCACACTTGAGCATTCAGTCAT 1763
Query 1688 CTCCAAGGCCTAAAAGGCCGTGGGCAGGTTTACTGGATACTACTCCACCCGGAAACCCCA 1747
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 1764 CTCCAAGGCCTAAAAGGCCATGGGCAGGTTTACTGGATACTACCCCACCCGGAAACCCCA 1823
Query 1748 TAACCGAAAGGGGTGGTTTTTTGGACTTTGAGGAGTCGGTTAGACCCTCTAAGGTCTTGC 1807
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1824 TAACAAAAAGGGGTGGTTTTTTGGACTTTGAGGAGTCGGTTAGACCCTCTAAGGTCTTGC 1883
Query 1808 AAGGTCAAGAAAATTTAGGTTCTGCATCACCCTCACAGGGGTTTGATGTTATGAACCGCC 1867
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1884 AAGGTCAAGAAAATATAGGTTCTGCATCACCCTCACAGGGGTTTGATGTTATGAACCGCC 1943
Query 1868 AGATACTGGATTTTGCGATGCAGTCTCACGCAAGTCCAGTTCTTTTGTCGAGTAGAGTGA 1927
||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| |
Sbjct 1944 GGATACTGGATTTTGCGATGCAGTCTCATGCAAATCCAGTTCTTGTGTCGAGTAGAGTCA 2003
Query 1928 AGGATCGATTTGGTGAGTTTGTAAATGCTACTGCCCTGAACCCAGCTTGTTCAGGTGTTA 1987
||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||
Sbjct 2004 AGGATCGATTTGGTGAGTTTGTAGATGCTACTGGCGTGAACCCAGCTTGTTCAGGTGTTA 2063
Query 1988 TGGACCTGGACAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATTTGCTCGCTTAAATCAT 2047
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2064 TGGACCTGGATAGGTTTCCAAGGGTCTTGCAAGGTCAAGAAATTTGCTCGCTTAAATCAT 2123
Query 2048 TCCCGCAATTTGCTGGTTTCAGTCCAGCTGCTGCTTCAGGTAAACCAAATCTTGGATATA 2107
||||||||||||||||||||||||||||||||||| | | | | ||
Sbjct 2124 TCCCGCAATTTGCTGGTTTCAGTCCAGCTGCTGCT-C-------C----T-----A-AT- 2164
Query 2108 CTGATCCCTTTGCGTACCAAGCCAACAAGTCAAGTTTCTATCCGCTAGCTTTACATGGGA 2167
| || ||||| |||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 2165 C----CC-TTTGCTTACCAAGCCAACAAGTCAAGTTACTATCCGCTAGCTTTGCATGGGA 2219
Query 2168 TTAGGAGCACTCATGTTCCATATCAGAATCCATACAATGCGGGAAATCAATCCTCGGGTC 2227
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 2220 TTAGGAGCACTCATGTTCCGTATCAGAATCCATACAATGCGGGAAACCAATCCTCGGGTC 2279
Query 2228 ACCCTTCTCCTGCAATAAACGTTGGTGAAGAGACTAGAAAGTTTGATGCACAAAATGGAG 2287
|||||| | |||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 2280 CCCCTTCACGTGCAATAAACTTTGGTGAAGAGACTAGAAAGTTTGATGCACAAAATGAAG 2339
Query 2288 GTGGCCTACCGAATAATGTTACCGCTGATTTGCCATTCAAGATTGATATGATGGGAAAAC 2347
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2340 GTGGCCTACCAAATAATGTTACAGCTGATTTGCCATTCAAGATTGATATGATGGGAAAAC 2399
Query 2348 AGAAAGGCAGTGACTTTAATATGAATGCTTCATCAGGATGTAAACTTTTCGGATTCTCCT 2407
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2400 AGAAAGGCAGTGAGTTGAATATGAATGCTTCATCAGGATGTAAACTTTTCGGATTCTCCT 2459
Query 2408 TACCCGTGGAGACACCTGCATCTAACCCGCAAAGCTCGAGCAAAAGGATATGTACAAAGG 2467
|||| |||||||||||||||||||| |||||||||||||||||||| || ||||||||||
Sbjct 2460 TACCAGTGGAGACACCTGCATCTAAGCCGCAAAGCTCGAGCAAAAGAATCTGTACAAAGG 2519
Query 2468 TTCACAAGCAAGGAAGCCAAGTGGGGAGAGCTATTGATTTATCCCGACTAAACGGTTATG 2527
|||||||||||||||||||||||||||||||||||||||| || ||||| ||||| ||||
Sbjct 2520 TTCACAAGCAAGGAAGCCAAGTGGGGAGAGCTATTGATTTGTCGCGACTTAACGGGTATG 2579
Query 2528 ATGATCTCCTTACCGAGCTTGAACGGCTGTTCAACATGGAAGGGCTTCTCAGGGATCCTG 2587
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2580 ATGATCTCCTTATGGAGCTTGAACGGCTGTTCAACATGGAAGGGCTTCTCAGGGATCCTG 2639
Query 2588 AAAAAGGATGGAGGATCTTATATACTGATAGTGAGAACGATATGATGGTCGTTGGCGATG 2647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2640 AAAAAGGATGGAGGATCTTATATACTGATAGTGAGAACGATATGATGGTCGTTGGCGATG 2699
Query 2648 ATCCATGGCATGATTTCTGCAATGTGGTGTGGAAGATACACTTATACACGAAAGAGGAAG 2707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2700 ATCCATGGCATGATTTCTGCAATGTGGTGTGGAAGATACACTTATACACGAAAGAGGAAG 2759
Query 2708 TGGAGAATGCGAATGATGATAACAAGAGTTGTTTAGAACAAGCTGCTATCATGATGGAAG 2767
|||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 2760 TGGAGAATGCGAATGACGATAACAAGAGTTGTTTAGAGCAAGCTGCTCTCATGATGGAAG 2819
Query 2768 CATCAAAGTCATCTTCTGTGAGCCAGCCTGATTCTTCTCCTACAATCACTAGGGTTTGAT 2827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2820 CATCAAAGTCATCTTCTGTGAGCCAGCCTGATTCTTCTCCTACAATCACTAGGGTTTGAT 2879
Query 2828 AAAAACAACCCAAGAAAGAAGCTTATTTTCTTATGTTCTTTAAGTGTGTTTTGCTGACAA 2887
| | || | |||||||||||||| || ||||| || |||||||||||||| ||||
Sbjct 2880 A----C--CC-AT-AAAGAAGCTTATTTCCT-ATGTT-TTAAAGTGTGTTTTGCTCACAA 2929
Query 2888 AAGAACTTCATCTTTATCTTTTGTGTTTG 2916
|||||||||| |||||||||| || ||||
Sbjct 2930 AAGAACTTCAACTTTATCTTT-GTCTTTG 2957
Score = 324 bits (175), Expect = 4e-87
Identities = 244/273 (89%), Gaps = 21/273 (8%)
Strand=Plus/Plus
Query 1 GAAAGAGAGAGTGTAGGTGTGGGTTCTGTTCTGTCTTGGCTTTGTCTCCCCCGCTTA--- 57
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4 GAAAGGGAGAGTGTAGGTGTGGGTTCTGTTCTGTCTTGGCTTTGTCTCCCCCGCTTATCT 63
Query 58 -------tc--tctctctctctctctc--tcCACTAAATTGttttttttttGCTCTTTAA 106
|| |||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 64 CTCCCTCTCTTTCTCTCTCTCTCTCTCTTTCCACTAAATTGTTTTTTTTTTGCTCTTT-A 122
Query 107 AAAAGTATAtttttttCCAATCTGTAAATTTTTA-TCTCTGTCTGTTCCTTCTTCTGCTC 165
|||||||||||||||||||||||| ||| ||||| ||| |||||||| | ||| |||||
Sbjct 123 AAAAGTATATTTTTTTCCAATCTGCAAA-TTTTAGTCTATGTCTGTT-C--CTTGTGCTC 178
Query 166 CCTCTTCTCAGTACCTGCAAATGGAGGAGGAAGAATCATACTTTGAAACCCTTGTTCTCA 225
|||||||||||||||||||||||||||| |||||||| | || |||||||||||||||||
Sbjct 179 CCTCTTCTCAGTACCTGCAAATGGAGGAAGAAGAATCCTTCTCTGAAACCCTTGTTCTCA 238
Query 226 TTTGATTCCTCCTTCCTCTCTCTT-TTCTCTCT 257
|||||||||||||||||||||||| ||||||||
Sbjct 239 TTTGATTCCTCCTTCCTCTCTCTTCTTCTCTCT 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 150902164544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5