BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496205
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60580.2 | Symbols: | RING/U-box superfamily protein | chr5... 2597 0.0
> AT5G60580.2 | Symbols: | RING/U-box superfamily protein | chr5:24354057-24356962
FORWARD LENGTH=1872
Length=1872
Score = 2597 bits (1406), Expect = 0.0
Identities = 1627/1726 (94%), Gaps = 45/1726 (3%)
Strand=Plus/Plus
Query 202 GATGGGTACTGAAGAGAAGCCTCTTAATTCTCTTGATTCAAGTCATGGTGATTCTTCCCC 261
||||| |||||||||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 131 GATGGCTACTGAAGAGAAGCCTCTTAATTCTCTTGATTTAAGCCATGATGATTCTTCCCC 190
Query 262 TGCTTCAAATCAGGCTGAAGGATCATCTGCTATAACAGAAGAGACTTCTGCAAATGTTCA 321
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 191 TGCTTCAAATCAGGCTGAAGGATCATCTGCTATAACTGAAGACACTTCTGCGAATGTTCA 250
Query 322 ACAATGGAGGCGAAAGAACCTCTCTTTACAGATACCCTCTAGAGCAGCTGGTCTCTCTCC 381
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 251 ACAATGGAGGCGAAAGAATCTCTCTTTACAGATACCCTCTAGAGCAGCTGGTCTCTCTCC 310
Query 382 TGAAGATTCGGTTGTTATCAAAATGCCTCCAACGCCTAGTCCAACTCCGAGAAGAGTCAA 441
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 311 TGAAGATTCGGTTGTTATCAAAATGCCTCCAACGCCTAGTCCAACTCCAAGAAGAGTCAA 370
Query 442 CTTTGCTTTGACTTCGAGTTCTCCAGGTCCTACTCCTACTTCTTCTTCTGTTCTTCCGCG 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 371 CTTTGCTTTGACTTCGAGTTCTCCAGGTCCTACTCCTACTTCTTCTTCTGTTCTTCCTCG 430
Query 502 TGGCAAATCGTCCTTGAAGAATCTATTGCCAAAAGCTGGGTGTAAACCAAAAATCTCTAA 561
||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 431 TGGCAAATCGTCCCTGAAGAATCTATTGCCAAAAGCTGGGTGTAAACCAAAAACCTCTAA 490
Query 562 CACCGATATCGAGAAGGGACAAGGGAATGCCTGTTCTCCTTCTGCATCCCAGGAGAAGGC 621
||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 491 CACTGATATCGAGAAGGGACAAGGGAATGCCTGTTCTCCTCCTGCATCGCAGGAGAAGGC 550
Query 622 TTCGATATCGAGGTCATTATCACTTTCAAAGTTATTTACACCTAGGATCAAGAGAACATC 681
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||
Sbjct 551 TTCGATATCGAGGTCATTATCACTTTCAAAGCTATTTACACCTAGGATCAAGAGAACTTC 610
Query 682 ATCTCTACCTGTGACTCCCATTATTCTTTCAAACTCAGAGTCAGCTCACGGAGGAACCAG 741
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 611 GTCCCTACCTGTGACTCCTGTTATTCTTTCAAACTCAGAGTCAGCTCACGGAGGAACCAG 670
Query 742 TGTTGCTCCTCAAACTCCAAACAGAAAAGGGAGTGTGCACATAGCTCGCTCTCGCTCTGT 801
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 671 TGTTGCTCCTCAAACTCCAAACAGAAAAGGGAGTGTACACATAGCTCGCTCTCGCTCTGT 730
Query 802 GCCTCTTAATGACAAGGAATTAAGCCTAAAGGGAATGGATTCATTCTTCAGAGTAATTCC 861
||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 731 GCCCCTTAACGACAAGGAATTAAGCCTGAAGGGAATGGATTCATTTTTCAGAGTAATTCC 790
Query 862 TTCGACTCCTCGTGTAAAGGAAGGAGATGTTTTCTCAAATGCATCAGAGACTGGTAATAC 921
||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 791 TTCGACTCCTCGTGTTAAGGAAGGAGACGTTTTCTCAAATGCATCAGAGGCTGGTAATAC 850
Query 922 TGAAACAGGTGATGCTGATGGAGAAGACATACCTGAGGATGAAGCAGTTTGTAGGATTTG 981
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 TGAAACAGGTGATGCTGATGGAGAAGACATACCTGAGGATGAAGCAGTTTGTAGGATTTG 910
Query 982 TTTGGTAGAGCTCTGTGAAGGAGGAGAAACCTTAAAAATGGAGTGTAGTTGCAAAGGCGA 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 TTTGGTAGAGCTCTGTGAAGGAGGAGAAACCTTAAAAATGGAGTGTAGTTGCAAAGGCGA 970
Query 1042 ACTTGCTCTTGCCCACAAAGATTGTGCTCTTAAATGGTTCACCATAAAGGGTAACAAGAC 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 ACTTGCTCTTGCCCACAAAGATTGTGCTCTTAAATGGTTCACCATAAAGGGTAACAAGAC 1030
Query 1102 TTGTGAGGTGTGTAAACAAGAAGTTAAGAACTTACCTGTAACACTCTTACGGATCCAAAG 1161
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1031 TTGTGAGGTGTGTAAACAAGAAGTTAAGAACTTACCTGTAACACTCTTACGCATCCAAAG 1090
Query 1162 CCTTCGAAATTCTGGTGTTCCTCAGCTAGATGTCTCGGGCTACAGGGTTTGGCAGGAGGT 1221
|||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1091 CCTTCGAAATTCTGGTGTTCCTCAGCTAGATGTCTCTGGCTATAGGGTGTGGCAGGAGGT 1150
Query 1222 GCCAGTTCTAGTAATCATTAGCATGCTCGCTTACTTCTGCTTCCTCGAGCAACTCCTGGT 1281
|| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1151 ACCGGTTCTAGTAATCATCAGCATGCTCGCTTACTTCTGCTTCCTCGAGCAGCTCCTGGT 1210
Query 1282 TGAGAAAATGGGTACAGGCGCAATCGCGATATCACTGCCGTTTTCTTGTATTCTTGGTCT 1341
|||||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||
Sbjct 1211 TGAGAATATGGGTACAGGTGCCATCGCTATATCACTGCCGTTTTCTTGTATTCTTGGTCT 1270
Query 1342 TCTTGCATCCATGACCGCATCAACCATGGTTCTGGAATATTCCTATGCAGTAATGAGAAG 1401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 TCTTGCATCCATGACCGCATCAACCATGGTTCTGGAATATTCCTATGCAGTAATGAGAAG 1330
Query 1402 ATTTGTCTGGATTTACGCATCTGTCCAGTTTGCGTTGGTTGTTCTCTTCGCCCATATATT 1461
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1331 ATTTGTCTGGATTTACGCATCTGTCCAGTTTGCGTTGGTCGTTCTCTTCGCCCATATATT 1390
Query 1462 TTACTCTGTGGTGAAGTTGCAACCAGTTCTGTCAGTTCTTCTGTCAACATTTGCTGGATT 1521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1391 TTACTCTGTGGTGAAGTTGCAACCAGTTCTGTCAGTTCTTCTGTCAACATTTGCTGGATT 1450
Query 1522 TGGTGTATGCATATGCGGAAGTTCAGTGATGGTTGAGTTTGTGAGATGGAGACGAAGATG 1581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1451 TGGTGTATGCATATGCGGAAGTTCAGTGATGGTTGAGTTTGTGAGATGGAGACGAAGATG 1510
Query 1582 GCGAGCCAGAAGGCTAGAGCAACAGCTGAACCA-G----G-CTCAG--AC-ACCGCCCCA 1632
||||||||||||||||||||||||||||||||| | | ||| | || |||||| ||
Sbjct 1511 GCGAGCCAGAAGGCTAGAGCAACAGCTGAACCATGCTTTGACTCTGTCACAACCGCCGCA 1570
Query 1633 ACCGCTGGATCCAACAACCTCTCTGCATCATTCAAATGCCTCAT--AGAGCCCAGAAGTG 1690
||| ||||||||||||||||||||||||||||||||| |||||| |||||| |||||||
Sbjct 1571 ACCACTGGATCCAACAACCTCTCTGCATCATTCAAATACCTCATAGAGAGCCAAGAAGTG 1630
Query 1691 GA-AGGATGATTTTACATTTATACA--GTAGTTTGGTTAATG-TAATGCAATGATTTGTA 1746
|| | |||||||||||||||||||| ||||||||||||||| | ||| |||||||||||
Sbjct 1631 GACA-GATGATTTTACATTTATACAGTGTAGTTTGGTTAATGTTTATGTAATGATTTGTA 1689
Query 1747 TAAAAG-AAAAGAGAAAGTGAT-CAAGGAATGCTTAAAGA-------------TTG--TT 1789
|||||| ||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 1690 TAAAAGAAAAAGAGAAAGTGATCCAAGGAATGCTTAAAGATTGTTCCTTTTGTTTGTTTT 1749
Query 1790 ---T-C-C-TTTG-CTTGTT-T---TTTGTATCTTTGATTTGCTCAATCTCTGCAAATGA 1838
| | | |||| ||||| | |||||| ||||||||||||||||||||||||||||
Sbjct 1750 ACATACACATTTGTATTGTTGTAAGTTTGTAACTTTGATTTGCTCAATCTCTGCAAATGA 1809
Query 1839 AATGTTTGTAGTAGTATTGTATTTCTTTGTATAATAAAAAGATTTA 1884
||||||||||| ||||||| ||||| |||||||||||||||||||
Sbjct 1810 AATGTTTGTAGCAGTATTGG-TTTCTCTGTATAATAAAAAGATTTA 1854
Score = 134 bits (72), Expect = 4e-30
Identities = 113/131 (86%), Gaps = 9/131 (7%)
Strand=Plus/Plus
Query 15 TAGCTACTGTGTCACGCTTTTCTCTAGCAAAAACTTTGATCCCTCTTAAT-A-T----AA 68
|||||||||||||||||||||||||||| || |||||||| | |||| || | | ||
Sbjct 2 TAGCTACTGTGTCACGCTTTTCTCTAGCGAATACTTTGATGCTTCTTCATGACTCTTTAA 61
Query 69 GAAGATTATTCTGAGATTTTTCTCTGGCCTTCTAAATTATTAAAGTCTTCTTTTTTATAT 128
|||||||||||||| |||| |||||||||||||| |||||||||||||| |||||||
Sbjct 62 CAAGATTATTCTGAGCTTTTCCTCTGGCCTTCTAA-TTATTAAAGTCTTCCTTTTTAT-- 118
Query 129 CTATTGTTAAG 139
|||||||||||
Sbjct 119 CTATTGTTAAG 129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93272612610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5