BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496217 Length=787 Score E Sequences producing significant alignments: (Bits) Value AT5G60680.1 | Symbols: | Protein of unknown function, DUF584 |... 1035 0.0 > AT5G60680.1 | Symbols: | Protein of unknown function, DUF584 | chr5:24386145-24386976 FORWARD LENGTH=832 Length=832 Score = 1035 bits (560), Expect = 0.0 Identities = 751/834 (90%), Gaps = 49/834 (6%) Strand=Plus/Plus Query 1 TAAAAGCAAAGACTGCCTCACGACTAATTCTTCTTCTTCATTACCA-AATAAACAAATCT 59 ||||| |||||||| |||||||||||||||||||||||||||| || | ||||||||||| Sbjct 1 TAAAACCAAAGACTCCCTCACGACTAATTCTTCTTCTTCATTAGCAGATTAAACAAATCT 60 Query 60 CAACTTTCGAA---TT-----TTC--C---ATCTCTTCATCAATGGCGACGGGAAAGAGT 106 |||| |||||| || ||| | |||||||| ||||||||||||||||||||| Sbjct 61 CAACATTCGAATTTTTAAAAATTCTTCAAAATCTCTTCTTCAATGGCGACGGGAAAGAGT 120 Query 107 TACTACGCTAGACCTAGCTATCGATTTCTCGGCACCGATCAGCCGTCTTACTTCACCGCT 166 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TACTACGCTAGGCCTAGCTATCGATTTCTCGGCACCGATCAGCCGTCTTACTTCACCGCT 180 Query 167 TCCGATTCAGGTCTCGAATTCGACGAATCCGATCTCTACAATCCAATCCACTCCGATTCA 226 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 181 TCCGATTCAGGTCTCGAATTCGACGAATCCGATCTCTTCAATCCAATCCACTCCGATTCA 240 Query 227 CCAGATTTTCGCCGCAAAATCTCTTCATCAGCCAGATCCGCTAAAAAACCGTCGAATCGT 286 ||||||||| |||| |||||||||||||||| |||||||| ||||||| ||||||||||| Sbjct 241 CCAGATTTTTGCCGTAAAATCTCTTCATCAGTCAGATCCGGTAAAAAATCGTCGAATCGT 300 Query 287 CCCTCCGCCG-----T-------AGCAGCGTCGTCGCTTCCTGTAAACGTACCGGACTGG 334 |||||||||| | ||||||||||||||||||||| ||||| ||||||||| Sbjct 301 CCCTCCGCCGCTTCCTCCGCCGCAGCAGCGTCGTCGCTTCCTGTTAACGTGCCGGACTGG 360 Query 335 TCCAAGATTCTCCG-GGAAGAATACCGTGATAACCGCCGGAGAAGCATCGAGGATAACGA 393 |||||||||||||| || ||||||||| |||||||| ||||||||||||||||||||||| Sbjct 361 TCCAAGATTCTCCGCGG-AGAATACCGCGATAACCGACGGAGAAGCATCGAGGATAACGA 419 Query 394 CGACGAT---GATGATAACGAAGACGGAGGCGGTTGGTTGCCGCCGCATGAGTTTCTAGC 450 ||||||| ||||||||||||||||| |||| |||||| ||||||||||||||||| || Sbjct 420 CGACGATGACGATGATAACGAAGACGGTGGCGATTGGTTACCGCCGCATGAGTTTCTGGC 479 Query 451 GAAGACGAGAATGGCTTCGTTCTCGGTTCATGAAGGAGTTGGGAGGACATTGAAAGGAAG 510 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 480 GAAGACGAGAATGGCTTCGTTCTCGGTTCATGAAGGAGTAGGGAGGACATTGAAAGGAAG 539 Query 511 AGATCTGAGTAGGGTTCGAAATGCAATTTTTGAAAAAATTGGGTTCCAAGATTAAATATT 570 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 540 AGATCTGAGTAGGGTTCGAAATGCAATTTTTGAAAAATTTGGGTTCCAAGATTAAATATT 599 Query 571 TGGAG--TTTTCC--TTT-CAttt--tttt-GGTTTACTTCAATCATTTTCTCAAGTAAC 622 |||| |||| ||| | ||| |||| || |||||||||||||||||||||||||| Sbjct 600 TGGAAACTTTTGGAGTTTTCCTTTAATTTTTGGCTTACTTCAATCATTTTCTCAAGTAAC 659 Query 623 TGTCagagaagagagagagCATGTAATATTTCTAGAAATGCCCTCGATTTATCGTTATAT 682 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 660 TGTCAGAGAAGAGAGAGAGCATGTAATATTTCTAGAAATGCCCTCCATTTATCGTTATAT 719 Query 683 TCCGAAAATCTTACCC-ATGTAAtt-ttttt----ctttt-ac-ttttgag-acattttg 733 |||||||||||||||| |||||||| ||||| ||||| | |||| | |||||||| Sbjct 720 TCCGAAAATCTTACCCTATGTAATTGTTTTTTTAACTTTTGAGATTTTTATCACATTTTG 779 Query 734 cgtaatgagtaatagattatgttttcttttttttGGAAGAATGTTTGTTTTGTT 787 ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| Sbjct 780 CGTAATGAGTAATAGATAATGTTTTCTTTTTTT-GGAAGAGTGTTTGTTTTGTT 832 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38278420014 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5