BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496246
Length=1539
Score E
Sequences producing significant alignments: (Bits) Value
AT5G60940.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2420 0.0
AT5G60950.1 | Symbols: COBL5 | COBRA-like protein 5 precursor |... 76.8 6e-13
> AT5G60940.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:24522978-24525812 FORWARD LENGTH=1561
Length=1561
Score = 2420 bits (1310), Expect = 0.0
Identities = 1486/1566 (95%), Gaps = 32/1566 (2%)
Strand=Plus/Plus
Query 1 GGAGGAGGAAGAAGACGATGG-T-----TTAACAGAGTAAGCTCAGAAATGGCGACTCTG 54
||||||||||||||||||||| | || |||||||||||||||||||||||||||||
Sbjct 1 GGAGGAGGAAGAAGACGATGGTTGACACTTGACAGAGTAAGCTCAGAAATGGCGACTCTG 60
Query 55 GTTTCGAATTAAACTTGT---G-AGG----TA-GGTT-T--TGTGATAAAG--AATGGGG 100
|||||||||| ||||||| | ||| || |||| | ||||||||| |||||||
Sbjct 61 GTTTCGAATTGAACTTGTGAGGAAGGTTTTTAGGGTTATAAGGTGATAAAGAAAATGGGG 120
Query 101 AATAGTGGAGATTTGGAGCAGGCTCTGCAAGATGGGAATATCTTTAGACAGCTCAATGCC 160
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AATAGTGGAGATTTGGAGCAGGCTCTGCAAGATGGGAATATCTTTAGACAGCTCAATGCT 180
Query 161 CTCATTGTAGCTCATCTCCGTCATCACAATCTCTCACAGGTTGCAAGTGCGGTTGCATCA 220
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 181 CTTATTGTAGCTCATCTCCGTCATCACAATCTCTCACAAGTTGCAAGTGCGGTTGCTTCA 240
Query 221 GCAACGATGACACCATTGTATATTGAGGTTCCTCCAAACCGTCTTCTAGAGCTTGTTGCA 280
||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 241 GCAACAATGACACCATTGAATATTGAGGTTCCTCCAAACCGTCTTTTGGAGCTTGTTGCA 300
Query 281 AAGGGTCTTGCAGCGGAGAACAATGGGACATTGAGAGGTGTTTCTTCATCAGTCTTGTTA 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AAGGGTCTTGCAGCGGAGAACAATGGGACATTGAGAGGTGTTTCTTCATCAGTCTTGTTA 360
Query 341 CCTTCTTCTTATGGATCAATCACTACTCCTCGAACAGCTTCTATCGACTTCAGTGTTACT 400
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 361 CCTTCTTCTTATGGATCAATCACTACTCCTCGAACAGCTTCTATCGACTTTAGTGTTAAT 420
Query 401 CATGCGAAGGGCTCATCAAAGACTATCCCAAAGCATGAATCAAAGACGCTATCAGAGCAC 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CATGCGAAGGGCTCATCAAAGACTATCCCAAAGCATGAATCAAAGACGCTATCAGAGCAC 480
Query 461 AAGAGCGTTGTTAGGTGTGCAAGATTTAGTCCTGATGGAATGTTTTTTGCAACTGGCGGT 520
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 481 AAGAGCGTTGTTAGGTGTGCAAGATTTAGTCCTGATGGAATGTTTTTTGCTACTGGTGGT 540
Query 521 GCAGACACATCAATTAAGCTCTTTGAGGTGCCAAAAGTTAAACAGATGATTTCAGGAGAT 580
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCAGACACATCTATTAAGCTCTTTGAGGTGCCAAAAGTTAAACAGATGATTTCAGGAGAT 600
Query 581 ACTCAAGCTCGACCATTAATACGGACCTTTTATGATCATGCTGAACCCATAAACGATCTT 640
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 601 ACTCAAGCTCGACCATTAATACGGACTTTTTATGATCATGCTGAACCGATAAACGATCTT 660
Query 641 GATTTCCACCCTCGAAGCACAATCCTAATATCTAGTGCCAAAGACAACTGTATAAAGTTT 700
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GATTTCCACCCTCGGAGCACAATCCTAATATCTAGTGCCAAAGACAACTGTATAAAGTTC 720
Query 701 TTCGACTTCTCCAAAACCACGGCTAAACGAGCATTCAAAGTTTTTCAGGATACCCATAAT 760
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTCGACTTCTCCAAAACCACGGCTAAACGAGCATTCAAAGTTTTTCAGGATACCCATAAC 780
Query 761 GTGCGCTCTGTATCTTTTCATCCGTCAGGAGAGTTTCTTCTTGCAGGAACCGATCATCCA 820
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GTGCGCTCTATATCTTTTCATCCGTCAGGAGAGTTTCTTCTTGCAGGAACCGATCATCCA 840
Query 821 ATTCCACATCTGTACGATGTAAACACATATCAGTGCTTTCTTCCTTCAAACTTCCCAGAC 880
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 841 ATTCCACATCTGTACGATGTAAACACATATCAGTGCTTTCTTCCTTCAAACTTCCCTGAC 900
Query 881 AGTGGAGTAAGTGGAGCCATTAATCAGGTGCGATATTCTTCCATGGGATCCATCTACATT 940
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 901 AGTGGAGTAAGTGGAGCCATTAATCAGGTGAGATATTCTTCCACGGGATCCATCTACATT 960
Query 941 ACAGCCTCAAAGGATGGAGCTATTCGACTCTTTGACGGGGTTAGCGCAAAGTGTGTTCGC 1000
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ACAGCCTCAAAGGATGGAGCTATTCGACTCTTTGACGGGGTTAGCGCAAAGTGTGTTCGC 1020
Query 1001 TCCATTAGCAATGCACATGGAAAATCAGAGGTCACAAGCGCAGTGTTCACTAAGGATCAA 1060
|||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1021 TCCATTGGCAATGCACATGGAAAATCAGAGGTCACAAGCGCAGTGTTCACTAAAGATCAA 1080
Query 1061 AGGTTTGTTCTCTCATCCGGTAAGGATTCTACAGTTAAGTTATGGGAAATAGGCTCAGGT 1120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1081 AGGTTTGTTCTCTCATCCGGTAAGGATTCCACAGTTAAGTTATGGGAAATAGGCTCAGGT 1140
Query 1121 CGAATGGTAAAGGAATATCTTGGAGCAAAGCGGATAAAACTGCGGTCTCAGGCAATCTTT 1180
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1141 CGAATGGTAAAGGAATATCTTGGAGCAAAGCGGGTAAAACTGCGGTCTCAGGCAATTTTT 1200
Query 1181 AACGACACTGAAGAGTTTGTAATCTCCATAGATGAAGCAAGCAATGAGGTCGTTACATGG 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 AACGACACTGAAGAGTTTGTAATCTCCATAGATGAAGCAAGCAATGAGGTCGTTACATGG 1260
Query 1241 GATGCTAGAACCGCAGATAAAGTGGCAAAGTGGCCTTCTAACCATAACGGTGCACCACGG 1300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 GATGCTAGAACCGCAGATAAAGTGGCAAAGTGGCCTTCTAACCATAACGGTGCACCACGG 1320
Query 1301 TGGATTGAGCACTCGCCAGATGAATCAGTCTTTGTTACTTGTGGAACAGACAGATCAGTC 1360
||||| ||||||||||| | |||||||||||||||||||||||||| ||| |||||| |
Sbjct 1321 TGGATCGAGCACTCGCCGGTTGAATCAGTCTTTGTTACTTGTGGAATAGATAGATCAATT 1380
Query 1361 CGGTTCTGGAAGGAATCCGTTTAGAAGAGAA-CCAATCAAAGCAATCAAAGTAGTAT-TT 1418
||||||||||||||||||||||||| ||||| |||||||| |||||||||| | ||
Sbjct 1381 CGGTTCTGGAAGGAATCCGTTTAGATGAGAATCCAATCAA-----TCAAAGTAGTGTATT 1435
Query 1419 TTATTCTCTTAAAACAAAAACCATACATGGaaaaaaaC-----TCCGTTGTTCATATTGG 1473
|||||||||||||||| |||||||||||| ||||||| |||||||||||| |||
Sbjct 1436 TTATTCTCTTAAAACATAAACCATACATGAAAAAAAAAAAAAATCCGTTGTTCATGTTGC 1495
Query 1474 TTTGTGGAAGACGCAAGTAATGTTCCAGGTCACTGCAAAAGAACAAAAACAAAGCAGGTG 1533
||||| ||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 1496 TTTGTAGAAGACGCAAGTAATCTTCCAGGTCACTGCAAAAGAACGAAATCAAAGCAGGTG 1555
Query 1534 AGCTTC 1539
||||||
Sbjct 1556 AGCTTC 1561
> AT5G60950.1 | Symbols: COBL5 | COBRA-like protein 5 precursor
| chr5:24526847-24528084 REVERSE LENGTH=1004
Length=1004
Score = 76.8 bits (41), Expect = 6e-13
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Minus
Query 1459 CGTTGTTCATATTGGTTTGTGGAAGACGCAAGTAATGTTCCAGGTCA 1505
|||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 700 CGTTGTTCATGTTGCTTTGTGGAAGACGCAAGTAATGTTCCAGGTCA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75953424585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5