BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496250 Length=1105 Score E Sequences producing significant alignments: (Bits) Value AT5G60970.1 | Symbols: TCP5 | TEOSINTE BRANCHED 1, cycloidea an... 1550 0.0 > AT5G60970.1 | Symbols: TCP5 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 | chr5:24535570-24537047 REVERSE LENGTH=1248 Length=1248 Score = 1550 bits (839), Expect = 0.0 Identities = 951/1003 (95%), Gaps = 15/1003 (1%) Strand=Plus/Plus Query 109 ACATGTTGCAACAGCAACGA-CCGAGTTCGGTATCATCATCTTCAAGGCAATGGACTTCA 167 ||||||||||||| |||| | |||||||||| | ||||||||||||||||||||||||| Sbjct 251 ACATGTTGCAACAACAAC-AGCCGAGTTCGG--T-ATCATCTTCAAGGCAATGGACTTCA 306 Query 168 GCTTTTAGGAATCCAAGAATCGTTCGAGTCTCAAGAACATTCGGTGGCAAAGACAGACAT 227 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 307 GCTTTTAGGAATCCAAGAATCGTTCGAGTCTCAAGAACATTCGGTGGCAAAGACAGACAC 366 Query 228 AGCAAAGTCTGTACGGTCCGTGGTCTTCGAGACCGGAGGATAAGGTTGTCCGTACCTACA 287 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 367 AGCAAAGTATGTACAGTCCGTGGTCTTCGAGACCGGAGGATAAGGTTGTCCGTACCTACA 426 Query 288 GCTATTCAACTCTACGACCTTCAAGATCGATTAGGGCTGAGTCAGCCAAGCAAAGTCATC 347 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 427 GCTATTCAACTCTACGACCTTCAAGATCGATTAGGGCTGAGTCAGCCAAGCAAAGTCATT 486 Query 348 GATTGGTTACTCGAAGCAGCAAAAGATGACGTCGACAAGCTACCTCCTCTACAATTCCCA 407 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 487 GATTGGTTACTCGAAGCAGCAAAAGATGACGTAGACAAGCTACCTCCTCTACAATTCCCA 546 Query 408 CATGGGTTTAACCAAATGTATCCAAATCTCATCTTTGGAAACTCCGGGTTTGGAGAATCG 467 ||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 547 CATGGATTTAACCAGATGTATCCAAATCTCATCTTCGGAAACTCCGGGTTTGGAGAATCT 606 Query 468 CCATCTTCAACTTCATCAACAGCGTTTCCAGGAACCAATCTCGGGTTCTTGGAAAATTGG 527 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 607 CCATCTTCAACTACATCAACAACGTTTCCAGGAACCAATCTCGGGTTCTTGGAAAATTGG 666 Query 528 GATCTTGGTGGTTCTTCCAGAACAAGATCAAGATTAACCGATACTACTACGACCCAGAGA 587 ||||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| ||| Sbjct 667 GATCTTGGTGGTTCTTCAAGAACAAGAGCAAGATTAACCGATACAACTACGACCCAAAGA 726 Query 588 GAAAGTTTTGATCTTGATAAAGGAAAATGGATCAAACACGACGAGAATAGTAATCACGAT 647 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 727 GAAAGTTTTGATCTTGATAAAGGAAAATGGATCAAAAACGACGAGAATAGTAATCAAGAT 786 Query 648 CATCAAGGGTTCGACACCAATCATCAACAT---TTTCCACTGACCAATCCTTACAACAAC 704 ||||||||||| |||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct 787 CATCAAGGGTTTAACACCAATCATCAACAACAATTTCCTCTGACCAATCCGTACAACAAC 846 Query 705 ACTTCATCTTATTACAACCTCGGACATCTTCAACAATCGTTAGACCAATCCGGTAATAAC 764 |||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||| Sbjct 847 ACTTCAGCTTATTACAACCTTGGACATCTTCAACAATCGTTAGACCAATCTGGTAATAAC 906 Query 765 GTTACTGTCGCAATATCTAATGTTGCTGCTAATAACAACAATAATCTCAATTTGCCTCCT 824 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 907 GTTACTGTCGCAATATCTAATGTTGCTGCTAATAATAACAATAATCTCAATTTGCATCCT 966 Query 825 CCTTCCTCGTCTGCTGGAGATGGATCTCAGCttttttttGGTCCTTCTCCTCCAGCAATG 884 |||||||||||||| ||||||||||||||||||||||| |||||| ||||||| |||||| Sbjct 967 CCTTCCTCGTCTGCCGGAGATGGATCTCAGCTTTTTTTCGGTCCTACTCCTCCGGCAATG 1026 Query 885 AGCTCTCTATTCCCGACATACCCTTCGTTTCTCGGAGCTTCTCATCATCATCATCATGTC 944 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 1027 AGCTCTCTATTCCCGACATACCCTTCGTTTCTTGGAGCTTCTCATCATCATCAT---GTC 1083 Query 945 GTCGATGGAGCCGGTCATCTTCAGCTCTTTAG-TACGAATTCAAATACCGCCTCGCAGCA 1003 |||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||| Sbjct 1084 GTCGATGGAGCCGGTCATCTTCAGCTCTTTAGCT-CGAATTCAAATACCGCATCGCAGCA 1142 Query 1004 ACAGTTGAT-CACGGGTAATACGAGTTTGATTAGACCATTTCATCATTTGATGAGCTCGA 1062 ||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1143 ACACATGATGC-CGGGTAATACGAGTTTGATTAGACCATTTCATCATTTGATGAGCTCGA 1201 Query 1063 ATCATGATACGGATCGTCATAGTAGCGATAATGAATCAGATTC 1105 ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1202 ATCATGATACGGATCATCATAGTAGCGATAATGAATCAGATTC 1244 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54166388055 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5