BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496271
Length=2916
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61190.1 | Symbols: | putative endonuclease or glycosyl hyd... 1764 0.0
> AT5G61190.1 | Symbols: | putative endonuclease or glycosyl hydrolase
with C2H2-type zinc finger domain | chr5:24615317-24620053
FORWARD LENGTH=3318
Length=3318
Score = 1764 bits (955), Expect = 0.0
Identities = 1307/1470 (89%), Gaps = 52/1470 (4%)
Strand=Plus/Plus
Query 1 ATGTCCACGGCGGAGGCGGATTACGTGAAGGCCAAAACGTCGGTGTGGTGGGATATAGAG 60
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 164 ATGTCGACGGCGGAGGCGGATTACGTGAAGGCCAAAACATCGGTGTGGTGGGATATAGAG 223
Query 61 AATTGTGAGGTACCCAGAGGTTGGGATGCGCACGTGATTGCCCAGAATGTGAGTTCGGCT 120
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 224 AATTGCGAGGTACCCAGAGGTTGGGATGCGCACGTGATTGCCTTGAATGTGAGTTCGTCT 283
Query 121 TTGTTGAAGATGAATTATTGTGGACCTGTCTCAATTTCGGCTTATGGCGATACCAATCTC 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 284 TTGTTGAAGATGAATTATTGTGGACCTGTCTCAATTTCAGCTTATGGCGATACCAATCTC 343
Query 181 ATCCCTCTCCATCATCAACAAGCGCTTTCTTCTACTGGTGTTGCGCTTAATCACATTCCT 240
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 344 ATCCCTCTCCATCATCAACAAGCACTTTCTTCTACTGGTGTTGCGCTTAATCACATCCCA 403
Query 241 GCAGGAGTGAAAGATGCGAGCGATAAGAAGATTTTGGTGGATATGTTATTGTGGGCGATA 300
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||
Sbjct 404 GCAGGAGTGAAAGATGCGAGCGATAAGAAGATTCTGGTGGATATGTTGTTGTGGGCAATA 463
Query 301 GACAACCCTGCCCCAGCGAATTTCTTGCTTATCTCTGGTGACAGAGACTTCTCTAACGCT 360
||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 464 GACAACCCTGCGCCAGCGAATTTATTGCTAATCTCTGGTGACAGAGACTTCTCTAACGCT 523
Query 361 CTCCACCAGCTTCGAATGAGGAGGTATAACATTCTTTTGGCTCAACCTCCACGGGCCTCT 420
||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 524 CTCCATCAGCTAAGAATGAGGAGGTATAACATTCTTTTGGCTCAACCTCCACGAGCCTCT 583
Query 421 GTGCCGCTTGTTGCTGCTGCTAAAGATGTATGGCTCTGGACAACCCTAGCCTCCGGAGGT 480
|||||||||||||||||||| | |||||| |||||||||||| ||||||||| ||||||
Sbjct 584 GTGCCGCTTGTTGCTGCTGCCAGAGATGTTTGGCTCTGGACAGTCCTAGCCTCGGGAGGT 643
Query 481 CCTCCTCTTACAAGTTG-TGAATCCTCTCTACTCTTTTGCAATGGGCGTATTCATGTCTC 539
|||||||||||||| || ||||||||||||||||||| ||||||| || ||| ||||||
Sbjct 644 CCTCCTCTTACAAG-TGTTGAATCCTCTCTACTCTTTAACAATGGGGGTTTTCGTGTCTC 702
Query 540 TAATAAAGATGTGTTGAAACATCCGGTTTCTGAACAAGCTCAGCCCAGCCAACCACCTGG 599
|||||||| ||||| ||||| ||| |||||||||||||||||||| ||||||||| ||||
Sbjct 703 TAATAAAGGTGTGTCGAAACTTCCAGTTTCTGAACAAGCTCAGCCTAGCCAACCAACTGG 762
Query 600 TTCTACTTCTAAAGCT---GATACTAAGGATCACAAAACCAGAGAAAACCACT-TTCCAA 655
||| |||||||| ||| |||||||||||||| |||||||||||||| || | ||||||
Sbjct 763 TTCAACTTCTAACGCTGGAGATACTAAGGATCATAAAACCAGAGAAAAGCA-TGTTCCAA 821
Query 656 GAGGATCACCTCAAGAGACGAGAAAAAATATGTTTCAGAATGGCAGAGGAGCCACCGGTG 715
||||||||| |||||| | |||||||||||| ||||| || |||| |||||||| || |
Sbjct 822 GAGGATCACTTCAAGAAAATAGAAAAAATATGCTTCAGCATAGCAGTGGAGCCACAGGGG 881
Query 716 AACCTAATACTACTTGCAGATTATGCAATGTTGTATGTGATAGCTTTGAAAAATTCACCG 775
|| || |||||| |||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 882 AATCTGCTACTACCTGCAGAATATGCAATGTTGTATGTGATAGCTTTGAAAAGTTCACCG 941
Query 776 CTCACCTCTCAGATATAAGGCATATATCTCAGGCTGCCTTTGTAGGAAGTTGCAAAGCTC 835
||||||| |||||||||||||||||||||||||||||| |||||| |||| ||| |||||
Sbjct 942 CTCACCTTTCAGATATAAGGCATATATCTCAGGCTGCCATTGTAGAAAGTCGCAGAGCTC 1001
Query 836 CGGCCAGCGTTTCAGCCAAACCCATACAGGAAGCAGTTCTTGTCGAACCTTTGTTGTGCA 895
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1002 AGGCCAGCGTTTCAGCCAAACCCATACATCAAGCAGTTCTTGTCGAACCTTTGTTGTGCA 1061
Query 896 AAGTTTGCCAGATAAGCTTTACCAACAAAGATGCATATAAAAGTCACACCTATGGAAAAA 955
||||||||||||| |||||||||||||| ||| ||||||||| |||||||||||||||||
Sbjct 1062 AAGTTTGCCAGATCAGCTTTACCAACAATGATACATATAAAAATCACACCTATGGAAAAA 1121
Query 956 GACACCGAAACAACTTGGAACTGCAATCAGGTAAGTCCAAAAACATTTTGGTGGGACCAG 1015
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 AACACCGAAACAATTTGGAACTGCAATCAGGTAAGTCCAAAAACATTTTGGTGGGACCAG 1181
Query 1016 CTGAGCCGTCCAAGGAGGTTCTAGAGAAACATAAGAAGAATAAGAAGGTGTTGATTGA-A 1074
||||||| ||||| |||||||||||||||||||| | ||||||||||||| ||||||| |
Sbjct 1182 CTGAGCCTTCCAAAGAGGTTCTAGAGAAACATAATATGAATAAGAAGGTGATGATTGAGA 1241
Query 1075 GGTAGAGCTAAGACAAACGCTGATTTCGCTTGTCGTT-TGTGCAATGTGGTGTGCCAGAG 1133
| ||||||| || |||||||||| |||| ||||| || ||||||||||||||||||||||
Sbjct 1242 G-TAGAGCTCAGGCAAACGCTGAATTCGTTTGTC-TTATGTGCAATGTGGTGTGCCAGAG 1299
Query 1134 TCAGATTGTCTTTGATTCTCATCTGCGGGGTCAGAAGCATGCTAACATGCTGAGTCAATC 1193
||||||||||||| ||||||||||||| ||| |||||||||| |||||||||||||||||
Sbjct 1300 TCAGATTGTCTTTAATTCTCATCTGCGCGGTAAGAAGCATGCCAACATGCTGAGTCAATC 1359
Query 1194 AGAGGCAATGTTGGATCAGGCACTCTTTGATTCTA-ATAAGCTTCAAGAGAAATGTGTCG 1252
||||||| | || | | | ||||| | ||||||||||||||| | ||||
Sbjct 1360 AGAGGCACT-------CA-----T-TGT--TTCTACA-AAGCTTCAAGAGAAAGGAGTCG 1403
Query 1253 GAGAAAAGGTTCAACCAGGAGAAACATTTGCAGAGCCTCAGTTGCAGTCTCAAAAGGCTC 1312
||||||| | |||||| | |||||| ||||||||| |||||||||||||||||||||||
Sbjct 1404 GAGAAAAAGAACAACCAAGTGAAACAGTTGCAGAGCTTCAGTTGCAGTCTCAAAAGGCTC 1463
Query 1313 ACGAGAATACCAAGTGCTTTGAGAAGCATGTACTAGTTGATTCTAAAAAGCTTCAAGAGC 1372
| ||||| | | || | | ||||||||||||||| ||||||| ||||
Sbjct 1464 AAGAGAA------G--C----AG--G--T--ACTAGTTGATTCTAAGAAGCTTCCAGAGA 1505
Query 1373 AAGCTGTTGAAGAAAAGGATCAACCAAGTGAAATAACTGCACAGCCTAAAGTAA-TCGCT 1431
||| || ||||| ||||| |||||||| ||||| ||||||| || ||| | || | |||
Sbjct 1506 AAGGTGATGAAGTAAAGGGTCAACCAAAAGAAATGACTGCACTGCGTAATGCAAGT-GCT 1564
Query 1432 AAA--CATGTATGTCGTTTGTGCAATGTGG 1459
||| ||| | |||||| ||||||||||||
Sbjct 1565 AAATACAT-T-TGTCGTATGTGCAATGTGG 1592
Score = 1048 bits (567), Expect = 0.0
Identities = 734/815 (90%), Gaps = 9/815 (1%)
Strand=Plus/Plus
Query 1458 GGCACTTATTGATTCTCAGAAGCTTCAAGAGAAAGGTGTCGGAGAAAAGGATCAACCAAG 1517
|||||| ||||||||| |||||||||||||||||||| |||||||||| || ||||||||
Sbjct 1672 GGCACTCATTGATTCTAAGAAGCTTCAAGAGAAAGGTTTCGGAGAAAAAGAACAACCAAG 1731
Query 1518 AGAAACAGTTGTAGAGCCTCAGTTCCAGCCTCAAAACGCTCAAGAGAATAACAATTGTTA 1577
||||||| |||||||||| ||||| ||| ||||||||||||||||||||| ||| ||||
Sbjct 1732 AGAAACAATTGTAGAGCCACAGTTGCAGTCTCAAAACGCTCAAGAGAATAGCAAGTGTTT 1791
Query 1578 CGGAAAGCATGTTGTCATGGTGAATCAATCAGAGGAACTCATTTATGCTAGGAAGCTTGA 1637
|| |||||||||||||||||||||||||||||||| |||||| |||| || ||||||||
Sbjct 1792 CGAAAAGCATGTTGTCATGGTGAATCAATCAGAGGTACTCATCAATGCGAGTAAGCTTGA 1851
Query 1638 AGAGAAAGATGTCC--G-AGAAGCTCAACCAAAAGAAACAATTGCAGAACCTCAGTCGCA 1694
||||||||||| || | | |||||||||||| |||| |||| || ||||||||||||||
Sbjct 1852 AGAGAAAGATGCCCAAGAAAAAGCTCAACCAATAGAATCAATAGCCGAACCTCAGTCGCA 1911
Query 1695 GTCTCAAAACACTCAAGAGCATACCAAATTCTTTGAGAAGCAAAACGAAGAGTTGAGAAA 1754
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1912 GTCTCAAAACACTCAAGAGCATACCAAATTCTTTGAGAAGCAAAACGAAGAGTTGAGAAA 1971
Query 1755 GATTTGTGGCACATCAGAAAGCAGTGTAAAAGAACTTTTTCCAAGTACCAAAGACCGTGT 1814
|||||||||||| | |||||||||||||||||||| | |||||||||| || ||| | ||
Sbjct 1972 GATTTGTGGCACTTTAGAAAGCAGTGTAAAAGAACCTCTTCCAAGTACTAAGGACTGGGT 2031
Query 1815 CGAGACTGTTAACAAACAGATTCCAAATGCAGAATTTTTGTTTGGTGACATAATTTCTGA 1874
|||||| ||||||||||||||||||||| ||||||||| ||||||||| ||| |||||
Sbjct 2032 GGAGACTCTTAACAAACAGATTCCAAATGGAGAATTTTTCTTTGGTGACCTAAGATCTGA 2091
Query 1875 TTTTGAAGTAGCCAGAGGA-GCAAGAGAAT-TTTCTGGTGGCATTGTCAAGCCTGTGAAA 1932
|||||||||| |||| ||| ||||| |||| ||| || |||||||||||||||||| |||
Sbjct 2092 TTTTGAAGTACCCAG-GGAAGCAAGTGAATGTTT-TGATGGCATTGTCAAGCCTGT-AAA 2148
Query 1933 C-TCTCCAAAGGAGCAACTGTGCATTCAAGGGAGGCCGCCTTTGGAGCCGGCGATGGTGC 1991
| | |||||||||| |||| ||||||| ||||||||||||||| |||| || ||||| |
Sbjct 2149 CCTTTCCAAAGGAGAAACTAAGCATTCATGGGAGGCCGCCTTTGTAGCCAGCAATGGTTC 2208
Query 1992 TCAGTCCAGCGTTTCAACCAAACCTATGAAGGAACCAGAGGGTTTGCAGCCTGTGTGGTG 2051
||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||
Sbjct 2209 TCAGTCCAGCGTTTCAACCAATCCTTTGAAGGAACCAGAGGGTTTGCAGCCCGTGTGGTG 2268
Query 2052 CCAAGTCTGCCAGATCAGCTGCAACAACAAGGTTGTATATGCAAGTCACACCTATGGGAA 2111
|||||||||||||||||||||||||| |||||||| || |||||||||||| ||||||||
Sbjct 2269 CCAAGTCTGCCAGATCAGCTGCAACAGCAAGGTTGCATTTGCAAGTCACACATATGGGAA 2328
Query 2112 AAAACATCGACAGAACATGGAATTACAATCAGCCAAAAACGAAAATATGTCTAAGGGACC 2171
|||||| ||||||||| |||||| |||||||||||| ||||||| |||||||| |||||
Sbjct 2329 AAAACACCGACAGAACTTGGAATCACAATCAGCCAAGAACGAAACTATGTCTACTGGACC 2388
Query 2172 AGCCAAGCTTTCTAAAGATTATGGAGAGAAAACGAAGAAAGTACCACGCAAAAACGAAAC 2231
|| |||||||||||||||||||||||| ||||||||||||||| || |||||||| ||||
Sbjct 2389 AGGCAAGCTTTCTAAAGATTATGGAGAAAAAACGAAGAAAGTATCATGCAAAAACCAAAC 2448
Query 2232 AACCTTTGATTCTCAACTGAAGAGTCAGAACCATT 2266
|| |||||||||||||||||||||||||||||||
Sbjct 2449 CACATTTGATTCTCAACTGAAGAGTCAGAACCATT 2483
Score = 765 bits (414), Expect = 0.0
Identities = 488/524 (93%), Gaps = 4/524 (1%)
Strand=Plus/Plus
Query 2395 GAATTCTACCAAGAAAAACCGAGAGAAGCATTGGAGCAGTTCATTGTTGACTCGAGGACA 2454
||||| |||||||||||| ||||||||| |||||||||||| | ||||||| |||| |
Sbjct 2678 GAATTGAACCAAGAAAAACATAGAGAAGCACTGGAGCAGTTCAGTATTGACTCAAGGATA 2737
Query 2455 ACCCGAGAAGAAACCGACCAAGAAAAAGAAATAACAGAGGAGCACACACTTGTAAAGATG 2514
| ||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||
Sbjct 2738 ATCCGAGAAGAAACCGATCAAGAAAAAGAAGCAACAGAGGAGCAGACACTTGTAAAGATG 2797
Query 2515 GATGATGTTGGGTTTCGAGGGGCACTAGAAGATAAAGTGGAATTGAAGGAGAGACA-AGC 2573
|||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| | |
Sbjct 2798 GATGATCTTGGGTTTCGAGGGGCACCAGAAGATAAAGTGGAACTGAAGGAGAGACACA-C 2856
Query 2574 CGTATCTGAGAATTTGGTGCACCGTGTCTTCACTGAACAGAATCGAGAGTCTAGAATCCC 2633
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2857 CGTATCTGAGAACTTGGTGCACCGTGTCTTCACTGAACAGAATCGAGAGTCTAGAATACC 2916
Query 2634 CAATGAACCGAGAGGATGTTTGGATGTGATTCCTGAGAGAGTAGAAGTGCCACCAAATGT 2693
||||||||||||||||||||| ||||||||||||||||||||| || |||||||||| ||
Sbjct 2917 CAATGAACCGAGAGGATGTTTAGATGTGATTCCTGAGAGAGTAAAACTGCCACCAAACGT 2976
Query 2694 TAATGTGGCCAAGAATTTGGAAGATGAGCCGGAGCATAAACCCGAACCAAAAGCACAGGA 2753
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 2977 GAATGTGGCCAAGAATTTGGAAGATGAGCAGAAGCATAAACCCGAACCAAAAGCACAGGA 3036
Query 2754 ACCCGAAAACAAGTCTGCAGGACGCAAGGATCATCCTGGAGAGGCTGCCAAAAGGGAAGA 2813
| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 3037 AGCCGAAAACAAGTCTGGAGGACGCAAGGATCTTCCTGGAGAGGCTGCCAAAAGGGAAGA 3096
Query 2814 GATTAAGGGCCAAGCTGATAACTTTTGGACTCGCCTTTGGGGGAAAAAGGT-TTAAAATA 2872
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 3097 GATTAAGGGCCAAGCTGATAACTTTTGGACTCGCCTTTGGGGGAAAAAA-TATTAAAATA 3155
Query 2873 ATGTTAATTGTTAATTCATGTTTATGTTGTCAACAATGGATGTT 2916
|||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 3156 ATGTGAATTGTTAATTCATGTTTAAGTTGTCAACAATGGATGTT 3199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 144932298327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5