BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496297
Length=2645
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61380.1 | Symbols: TOC1, APRR1, PRR1, AtTOC1 | CCT motif -c... 3751 0.0
> AT5G61380.1 | Symbols: TOC1, APRR1, PRR1, AtTOC1 | CCT motif
-containing response regulator protein | chr5:24675064-24678550
FORWARD LENGTH=2707
Length=2707
Score = 3751 bits (2031), Expect = 0.0
Identities = 2338/2480 (94%), Gaps = 46/2480 (2%)
Strand=Plus/Plus
Query 1 ATTGATTGACAAAACAAAACTATGAGtcttctttctcttctcacttc-tcttgtcggaaa 59
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 1 ATTGATTGACAAAACAAAACAATGAGTCTTCTTTCTCTTCTCAC-TCTTCTTGTCGGAAA 59
Query 60 ttcaccttctctctctctcctcttcatctcaCCGCCGGCGTTACGCTGGATCTCCGGTGA 119
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 60 TTCACCTTCTCTCTCTCTCCTCCTCATCTCACCGCCGGCGTTACGCCGGATCTCCGGTGA 119
Query 120 CTTTTGTTGAGCTGTTTTGTCGATTCTTGATTCGATTTAGCA-ACAAAAG-A------AT 171
||||||||||||| |||||| ||||| ||||||||| ||| | | ||||| | ||
Sbjct 120 CTTTTGTTGAGCTTTTTTGTTGATTCATGATTCGATATAG-AGAAAAAAGAATTTCCTAT 178
Query 172 TTCAGCTCTTTGTTCTTAGATTTAGCTTATCTTTTTTGTTCTCATGGAT-AAGGAATTAG 230
|||||||||||||||||||||||| ||| | || |||||||| |||||| |||| |||||
Sbjct 179 TTCAGCTCTTTGTTCTTAGATTTATCTT-T-TTGTTTGTTCTTATGGATAAAGG-ATTAG 235
Query 231 GTTGGGGGATTAAAAGAGTAGTTTTTGTTTGGTTGTGAGATTACTTGACTTTTG-T-AGA 288
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 236 GTTGGGGGATTAAAAGAGTAGTTTTTGTTTGGTTGTGAGATTACTTGAC-TTTGTTAAGG 294
Query 289 GGATAAATTAGGTGACTTTGTAGGGACAGTGTACCGAAAAACCCTTGTTCTGATTTGGCC 348
|||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 295 GGATAAATTAGGCGACTTTGTAGGGACACTGTACCGAAAAACCCTAGTTCTGATTTGGCC 354
Query 349 ATGGAAGTATCATAGCACTTACTATTGTCGGTTTTATTTGTTCTACTTTTGTATAATCtt 408
||||||||||||||||||||||||||||||| |||| || |||||||||||||||||| |
Sbjct 355 ATGGAAGTATCATAGCACTTACTATTGTCGGCTTTACTTCTTCTACTTTTGTATAATCCT 414
Query 409 tttttttcttttttGTGTTAGGTTCTGTGATTAGATA-tttttttG-GTGGGTTTAGCTG 466
|||||||| |||||||||||||||||||| |||||||| |||||||||| ||
Sbjct 415 TTTTTTTC---------TTAGGTTCTGTGATTAGATATTTTTTTTGTGTGGGTTTAGTTG 465
Query 467 TTAATCTTATCATGGATCTGAACGGTGAGTGTAAGGGAGGAGATGGGTTTATTGATAGAA 526
||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 466 TTAATCTGATCATGGATTTGAACGGTGAGTGTAAAGGAGGAGATGGGTTTATTGATAGAA 525
Query 527 GCAGAGTTAGGATTTTGCTTTGTGACAATGATTCCAAGAGCTTGGGAGAAGTTTTCACTC 586
||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||| ||||
Sbjct 526 GCAGAGTCAGGATTTTGCTTTGTGACAATGATTCCACGAGTTTGGGAGAGGTTTTTACTC 585
Query 587 TCCTTTCAGAGTGTTCTTATCAAGTGACTTCAGTGAAATCAGCAAGGCAAGTGATTGATG 646
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 586 TCCTTTCAGAGTGTTCTTATCAAGTGACTGCAGTGAAATCAGCAAGGCAGGTGATTGATG 645
Query 647 CACTTAATGCAGAGGGACCTGATATCGATATCATACTGGCAGAAATCGATCTCCCAATGG 706
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 646 CACTTAATGCAGAGGGACCTGATATCGATATAATACTGGCGGAAATTGATCTCCCAATGG 705
Query 707 CCAAGGGTATGAAGATGCTGAGGTACATCACACGAGACAAAGATCTTCGGAGAATCCCTG 766
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 706 CTAAGGGTATGAAGATGCTGAGGTACATCACACGAGACAAAGATCTTCGCAGAATCCCTG 765
Query 767 TGATAATGATGTCGAGGCAAGACGAAGTCCCTGTCGTTGTAAAGTGCTTGAAGCTAGGTG 826
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 TGATAATGATGTCGAGGCAAGACGAAGTCCCTGTCGTTGTAAAGTGCTTGAAGCTAGGTG 825
Query 827 CAGCTGACTACCTTGTGAAGCCTCTTCGGACCAACGAGCTTCTAAACTTGTGGACACACA 886
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 826 CAGCTGACTACCTTGTGAAGCCTCTTCGCACCAACGAGCTTCTGAACTTGTGGACACACA 885
Query 887 TGTGGAGAAGAAGACGCATGCTAGGACTTGCTGAGAAGAATATGTTGAGCTATGATTTTG 946
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 886 TGTGGAGAAGAAGACGCATGCTAGGACTTGCTGAGAAGAATATGTTGAGCTATGATTTTG 945
Query 947 ATCTCGTGGGATCTGATCCAAGTGATCCAAACACAAATAGTACCAACCTGTTCTCTGACG 1006
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 946 ATCTTGTGGGATCTGATCAAAGTGATCCAAACACAAATAGTACCAACCTGTTCTCTGACG 1005
Query 1007 ACACAGATGATAGAAGTCTTAGGTCCACCAACCCGCAGAGAGGAAATTTAAGTCACCAGG 1066
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1006 ACACAGATGATAGAAGTCTTAGGTCCACCAACCCACAGAGAGGAAATTTAAGTCACCAGG 1065
Query 1067 AAAATGAGTGGTCTGTTGCTACTGCTCCTGTTCATGCTGGTGATGGTGGTCTTGGTGCTG 1126
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1066 AAAATGAGTGGTCTGTTGCTACTGCTCCTGTTCATGCTCGTGATGGTGGTCTTGGTGCTG 1125
Query 1127 ATGGAACAGCCACTTCTTCTCTTGCTGTTACTGCTATAGAGCCTCCATTGGATCATCTTG 1186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 ATGGAACAGCCACTTCTTCTCTTGCTGTTACTGCTATAGAGCCTCCATTGGATCATCTTG 1185
Query 1187 CTGGGTCTCACCATGAGCCAATGAAAAGAAATAGTAATCCAGCGCAATTTTCTTCAGCAC 1246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1186 CTGGGTCTCACCATGAGCCAATGAAAAGAAATAGTAATCCAGCGCAATTTTCTTCAGCAC 1245
Query 1247 CAAAGAAAAGTAGATTGAAGATCGGAGAGTCCTCTGCTTTCTTTACATATGTCAAATCTA 1306
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CGAAGAAAAGTAGATTGAAGATCGGAGAGTCCTCTGCTTTCTTTACATATGTCAAATCTA 1305
Query 1307 CTGTCCTTAGAACTAACGGTCAGGATCCTCCTCTTGTCAATGGAAATGGCTCACTTCATC 1366
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1306 CTGTCCTTAGAACTAACGGTCAGGATCCTCCTCTTGTCGATGGAAATGGCTCACTTCATC 1365
Query 1367 TTCATCGAGGTTTGGCGGAGAAGTTTCAAGCGGTGGCTAGTGAAGGGATCAACAACACCA 1426
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1366 TTCATCGGGGTTTGGCGGAGAAGTTTCAAGTGGTGGCTAGTGAAGGGATCAACAACACCA 1425
Query 1427 AACAAGCACGCGGAACAACACCAAAATCTACAGTCCTTAGAACTAACGGTCAGGATGCTC 1486
||||||||||| || |||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 1426 AACAAGCACGCAGAGCAACACCAAAATCTACTGTCCTTAGAACTAACGGTCAGGATCCTC 1485
Query 1487 CTCTTGTCAATGGATATGGCTCACTTCATCTTCATCGAGGTTTGGCGGAAAAGTTTCAAG 1546
|||||||||||||| ||||||||| |||||||||||| ||| |||||||||||||||||
Sbjct 1486 CTCTTGTCAATGGAAATGGCTCACATCATCTTCATCGGGGTGCGGCGGAAAAGTTTCAAG 1545
Query 1547 CGGTGGCTAGTGAAGGGATCAACAACACTAAACAAGCACGCGGAAGTAGAGAGACTGAGA 1606
||||||||||||||||||||||||||| |||||||||| | ||||||||| ||| |||
Sbjct 1546 TGGTGGCTAGTGAAGGGATCAACAACACCAAACAAGCACACAGAAGTAGAGGGACCGAGC 1605
Query 1607 AATACCATTCTCAAGGAGAGAACTTACAGAAGGGTGCCAGCTATCCATATTCCCTTGAGC 1666
||||||||||||||||||||| ||| ||||| || |||||||||||| ||||||||||||
Sbjct 1606 AATACCATTCTCAAGGAGAGACCTTGCAGAATGGCGCCAGCTATCCACATTCCCTTGAGC 1665
Query 1667 GGTCACGCACGCTTCCCACATCAATGGAATCTCATGGTAGGAACTACCAAGAAGGAAATA 1726
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1666 GGTCACGCACGCTTCCCACATCAATGGAATCTCATGGTAGGAACTACCAAGAGGGCAATA 1725
Query 1727 TGAATACTCCCCAAGTTGCTATGAACAGAAGTAAAGATTCGTCTCAAGTTGATGGATCGG 1786
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1726 TGAATATTCCCCAAGTTGCTATGAACAGAAGTAAAGATTCGTCTCAAGTTGATGGATCGG 1785
Query 1787 GTTTCTCTGCACCAAATGCCTATCCTTACTATATGCATGGGGTCATGAACCAAGTTATGA 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1786 GTTTCTCTGCACCAAATGCCTATCCTTACTATATGCATGGGGTCATGAACCAAGTTATGA 1845
Query 1847 TGCAATCAGCAGCCATGATGCCAACCAAATCATCCCCATGGGGTCATCAACTTCCTCATT 1906
|||||||||||||||||||||| | || | || || ||||||| |||||||||
Sbjct 1846 TGCAATCAGCAGCCATGATGCCT-C-AA-T-AT------GG--TCATCAAATTCCTCATT 1893
Query 1907 GCCAACCAAATCATCCGAATGGAATGACGGGATATCCTTATTACCACCACCCAATGAACA 1966
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1894 GCCAACCAAATCATCCGAATGGAATGACGGGATATCCTTACTACCACCACCCAATGAACA 1953
Query 1967 CATCACTGCAGCATAGTCATATGTCTTTACAGAATGGTCAGATGTCTATGGTTCATCATT 2026
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 CATCTTTGCAGCATAGTCAGATGTCTTTACAGAATGGTCAGATGTCTATGGTTCATCATT 2013
Query 2027 CTTGGTCACCGGTAGGAAATCCGTCTTCTAATGAGGTGAGGGTAAGTAAACTTGACAGAA 2086
|||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 2014 CTTGGTCACCGGCAGGAAATCCGCCTTCTAATGAGGTGAGGGTAAATAAACTTGACAGAA 2073
Query 2087 GAGAGGAAGCTCTGCTGAAATTTAGACGTAAAAGGAACCAACGGTGTTTTGATAAGAAGA 2146
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 2074 GAGAGGAAGCTCTGCTGAAATTCAGACGTAAAAGGAACCAACGTTGTTTTGATAAGAAGA 2133
Query 2147 TTAGGTATGTGAATAGAAAACGCCTTGCTGAGAGGAGACCGCGTGTTAAGGGTCAGTTTG 2206
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2134 TTAGGTATGTGAATAGGAAACGCCTTGCTGAGAGGAGACCCCGCGTTAAGGGTCAGTTTG 2193
Query 2207 TTAGGAAGATAAACGGGGTGAATGTTGATCTAAATGGACAGCCTGACTCTGCTGACTATG 2266
|||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2194 TTAGGAAGATGAACGGCGTGAATGTTGATTTAAATGGACAGCCTGACTCTGCTGACTATG 2253
Query 2267 ATGACgaggaagaggaggaagaagaagaagaggaagaggagaaCCACAATTCATCTCCTC 2326
||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||
Sbjct 2254 ATGACGAGGAAGAGGAGGAAGAAGAAGAAGA--A-GAGGAGAACCGGGATTCATCTCCTC 2310
Query 2327 AGGATGATGCTCTGGGAACTTGAAGAAACATCAAGAACTGAAAACCGTGTTGTGTTATAC 2386
||||||||||| |||||||||||||| ||| ||||||||||||||||| | |||||||||
Sbjct 2311 AGGATGATGCTTTGGGAACTTGAAGATACACCAAGAACTGAAAACCGT-T-GTGTTATAC 2368
Query 2387 CTATTTGCTTGCATCTTATCAAACAACACAAGATGTTGATCGACTGACACGAAAAGGATG 2446
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 2369 GTATTTGCTTGCATCTTATCAAACAACAGAAGATGTTGATCGACTGACACGAAAAAGATG 2428
Query 2447 ATGCTGCTACAGCCAAAAAA 2466
|| |||||||||||||||||
Sbjct 2429 ATACTGCTACAGCCAAAAAA 2448
Score = 243 bits (131), Expect = 9e-63
Identities = 167/183 (91%), Gaps = 7/183 (4%)
Strand=Plus/Plus
Query 2467 GTTGGCTCTT-CTGGCTCAAC--TTTGGCGGAGCATTGAAAAGCTCTC-GTGAGTTTAGC 2522
|||||||||| | |||||||| |||| | |||||||||||||||||| || |||||||
Sbjct 2480 GTTGGCTCTTGC-GGCTCAACTTTTTGACAGAGCATTGAAAAGCTCTCATTGGGTTTAGC 2538
Query 2523 TTAGTTCGTTGATAAATATATAATGTGTTTTTATCATGTTCACTCACATTCTCTCAGTAA 2582
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2539 TTAGTTCGTTGATAAACATATAATGT-ATTTTATCATGTTCACTCACATTCTCTCAGTAA 2597
Query 2583 GAAACTAAGATGTATTAACCTTTCTTCTCCTTCCAGCATCATTTACTTGAATCTTGTTTT 2642
| | || ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2598 GTA-CTCAGATGTATTAACCTTTCTTCTCCTTCCAGTATCATTTACTTGAATCTTGTTTT 2656
Query 2643 TCC 2645
|||
Sbjct 2657 TCC 2659
Score = 219 bits (118), Expect = 2e-55
Identities = 130/136 (96%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 1300 AAATCTACTGTCCTTAGAACTAACGGTCAGGATCCTCCTCTTGTCAATGGAAATGGCTCA 1359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1449 AAATCTACTGTCCTTAGAACTAACGGTCAGGATCCTCCTCTTGTCAATGGAAATGGCTCA 1508
Query 1360 CTTCATCTTCATCGAGGTTTGGCGGAGAAGTTTCAAGCGGTGGCTAGTGAAGGGATCAAC 1419
| |||||||||||| ||| |||||| |||||||||| ||||||||||||||||||||||
Sbjct 1509 CATCATCTTCATCGGGGTGCGGCGGAAAAGTTTCAAGTGGTGGCTAGTGAAGGGATCAAC 1568
Query 1420 AACACCAAACAAGCAC 1435
||||||||||||||||
Sbjct 1569 AACACCAAACAAGCAC 1584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131337056774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5