BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496313
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61530.1 | Symbols: | small G protein family protein / RhoG... 2124 0.0
> AT5G61530.1 | Symbols: | small G protein family protein / RhoGAP
family protein | chr5:24742048-24744784 FORWARD LENGTH=1569
Length=1569
Score = 2124 bits (1150), Expect = 0.0
Identities = 1264/1319 (96%), Gaps = 8/1319 (1%)
Strand=Plus/Plus
Query 1 TTTCTTCTCCTGGAGCGATCAATTCCTTTTTCATCATATTGCTGACTCT--T-TTCGTCG 57
|||| ||||||||||||||||||| |||||||||||||| ||||||||| | |||||||
Sbjct 64 TTTCATCTCCTGGAGCGATCAATTTCTTTTTCATCATATCGCTGACTCTCGTCTTCGTCG 123
Query 58 TCTTTGATCGTATCGAAGAATTGGGTTTAGTTCGATTCGATCATCAGCTATCTCAAATTT 117
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 124 TCTTTGATCGTATCGAGGAATTGGGTTTAGTTCGATTCGATCATCAGCTATCTCAATTTT 183
Query 118 TCTGGGGGATTTTTCTAAAGGTTTCTAGTGATTTGGTTGAAGTGCTTGGTATTGGATAAT 177
||| ||||||| ||||||||||||||||||| ||| || ||||| |||||||||||||||
Sbjct 184 TCT-GGGGATTGTTCTAAAGGTTTCTAGTGACTTGTTTAAAGTGGTTGGTATTGGATAAT 242
Query 178 GCCTTCTCTCATCTCACAGCAATGGCAGGAGAGGACTAGTGGATTCTTTTCTTCATCAGG 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 GCCTTCTCTCATCTCACAGCAATGGCAGGAGAGGACTAGTGGATTCTTTTCTTCATCAGG 302
Query 238 AACGAAGCTTAGGGAAGCAGGGCAGACAGCTGGTAGTTTTGT-GGGCGAAGTCGCTAAGG 296
||||||||||||||||||||||||||| |||||||||||||| ||| ||||| |||||||
Sbjct 303 AACGAAGCTTAGGGAAGCAGGGCAGACTGCTGGTAGTTTTGTCGGG-GAAGTTGCTAAGG 361
Query 297 ATGCGAAAGTGAATGTTGCTGATGTTGCAGAAAGAGTTGGGTCGTTGTTTAAAAGCCGGT 356
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 362 ATGCGAAAGTGAATGTTGCAGATGTTGCAGAAAGAGTTGGGTCGTTGTTTAAAAGCCGGT 421
Query 357 GGGCAATTCTTCAGCAGCCGGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTG 416
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 422 GGGCAATTCTTCAGCAGCCTGCAACTAGACATGCCGTGCAAGAACACCTCATAACAGCTG 481
Query 417 CTGCCACAACTGGGACCTTGGTCAGGAAGGGTATTACTGAGACAAAGGAAAAGGTTTCCG 476
|||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||| |
Sbjct 482 CTGCCACAACCGGGACTTTTGTCAGGAAGGGTATAACTGAGACAAAGGAAAAGGTTTCTG 541
Query 477 TTGGAAAGACCAAAGTGGAAGAGGCAGCCAAAAAGACTGCACAAAAGAGCAAGACCATTT 536
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 542 TTGGAAAGATCAAAGTGGAAGAGGCGGCCAAAAAGACTGCACAAAAGAGCAAGACCATTT 601
Query 537 TGACGGACATCGAAAGGTGGCAGAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGCGA 596
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 602 TGACGGATATCGAAAGGTGGCAAAAGGGAGTTGCCAGCTCAGATGTGTTTGGTGTTGCGA 661
Query 597 TTGAGATCACTGTCCAGCGGCAGGAGTCAAGCAGGCCTATTCCACTAATACT-GATTAAA 655
||||||||||||||||||||||||||||||||||||||||||| || ||||| | |||||
Sbjct 662 TTGAGATCACTGTCCAGCGGCAGGAGTCAAGCAGGCCTATTCCTCTGATACTAG-TTAAA 720
Query 656 TGCGCAGATTATCTCATATTAACAGGACTTAATTCACCGAACTTGTTCAAAGCCGAAGGA 715
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 TGCGCAGATTATCTCATATTAACAGGACTTAATTCACCGAACTTGTTCAAGGCCGAAGGA 780
Query 716 GACAAAAAGTTGATTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGCGCGTCAATA 775
|| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 GATAGAAAGTTGATTCAACAATTGGTTTCTGCTTACAATCAAGATCCTAGGGCGTCAATA 840
Query 776 CCTGAGGGTGTGAATCCAGTTGATGTCGCTGCACTCATGAAATACTATCTTGCTAGCCTT 835
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 841 CCTGAGGGTGTGAATCCAGTTGATGTCGCTGCACTCTTGAAATACTATCTTGCTAGCCTT 900
Query 836 CCGACACCACTAACTACTTTTGAGCTTTATAATGAAATCAAAGATGCACGGTCGAGCATA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CCGACACCACTAACTACTTTTGAGCTTTATAATGAAATCAAAGATGCACGGTCGAGCATA 960
Query 896 CACAGAATGAGAAAGTCACTCCAGAAGCTCTCCAATGTGAACTATAATACACTGGAGTTC 955
|||||||||||| |||||||||||||||| ||||||||||| ||||||||| ||||||||
Sbjct 961 CACAGAATGAGACAGTCACTCCAGAAGCTTTCCAATGTGAATTATAATACATTGGAGTTC 1020
Query 956 ATAACAGCGCTATTGCTTCGTGTGAGCCAGAAATCACTACTTAACAAGATGGATTCGCAT 1015
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1021 ATAACAGCGCTATTGCTTCGTGTGAGCCAGAAATCACTTCTTAACAAAATGGATTCGCAT 1080
Query 1016 AGCCTAGCTATGGAAATGGCTCCAGTGATCATGTGGCGAGAAGACAACAGGCCTGAATCC 1075
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 AGCCTAGCTATGGAAATGGCTCCAGTGATCATGTGGCGAGAAGACAACAGGCCTGAATCT 1140
Query 1076 TATCGGGAATACTGGAGACGCCCGTCGAGGAGTCCTAAGAAAAGCAACGACTTTGAAACT 1135
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1141 TATCGGGAATACTGGAGACGCCCGTCAAGGAGTCCTAAGAAAAGTAACGACTTTGAAACT 1200
Query 1136 GCTTCTCCGTGGGACTTGCTCTCAGATGAAGGAGAAGGTCCAGATGCATCTTCATCAATC 1195
||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1201 GCTACTCCATGGGACTTGCTCTCAGATGAAGGAGAAGGTCCAGATGCATCCTCATCAATC 1260
Query 1196 CCTCTAGATGATATCGTACAAGTTGATTTTGGAGCGGTCGAGGTTGTGCAGTGCCTAATT 1255
|||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||
Sbjct 1261 CCTCTAGATGATATCGCACGAGTTGATTTTGGAGCGGTCGAGGTTGTCCAGTGCCTAATT 1320
Query 1256 GAACATCACAATGCGATTTTCACGGATGCAGCCGAGACTGTATGGAGGTGAAACCACCA 1314
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1321 GAACACCACAATGCGATTTTCACTGATGCAGCCGAGACTGTATGGAGGTGAAACCACCA 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5