BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496321
Length=2882
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61560.1 | Symbols: | U-box domain-containing protein kinas... 4470 0.0
> AT5G61560.1 | Symbols: | U-box domain-containing protein kinase
family protein | chr5:24752868-24756718 FORWARD LENGTH=2901
Length=2901
Score = 4470 bits (2420), Expect = 0.0
Identities = 2749/2905 (95%), Gaps = 34/2905 (1%)
Strand=Plus/Plus
Query 1 ATCATTACTTCTTTGAATCTTTGGTTATATCCATAAAAGAATTCAACTGGTTTGCGCATA 60
||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||
Sbjct 1 ATCATTACTTCTTTGAATCTTTGGTTATAACCATTAAAGAATTCAACTGGTATGCGCATA 60
Query 61 AATTTCCGTATAACTCCATTAATTTAATCA-GAGACAAATTCACTGGACTCAAATTTGAT 119
|||||||| |||||||||||||| |||||| ||||| |||||||||||||||||||||||
Sbjct 61 AATTTCCGCATAACTCCATTAATATAATCAGGAGACCAATTCACTGGACTCAAATTTGAT 120
Query 120 TCGtcttcttcttctctctctctctcCATTTGTCAAGAAGCTGTTG-A--A---T----C 169
|||||||||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 121 TCGTCTTCTTCTTCTCTCTCTCTCTCCATTTGTCAAGAAGCTGTTGAATCATCGTCCCCC 180
Query 170 A--AGTTTTGGAAAAAGCTTTG-AAGTCAAATATCAATAGCACGACGAGAGATTAAGGAA 226
| ||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 181 ACGAGTTTTGGAAAAAGC-TTGCAAGTCAAATATCAATAGCACGACTAGAGATTAAGGAA 239
Query 227 ACAAAAGCTTCAACCTTTGAAGTCAAAATAC-TCAGATCTTAGCCGTTGAAAATCCAGAG 285
|||||||||| |||||||| ||||||||| | ||||||||||||||||| ||||||||||
Sbjct 240 ACAAAAGCTTGAACCTTTGTAGTCAAAAT-CATCAGATCTTAGCCGTTGGAAATCCAGAG 298
Query 286 ATGGGAGATGGAGCTTTAATCGTAGCGGTGGCTATTAAAGGGAACAATAGCAAAACCAAA 345
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 ATGGGAGACGGAGCTTTAATCGTAGCGGTGGCTATCAAAGGGAACAATAGCAAAACCAAA 358
Query 346 GGCGTTGTTCGATGGGCACTTCAAGAATTCGCTTCTCGAGAACATGTCGTCTTCAAGCTC 405
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 359 GGCGTTGTTCGATGGGCACTTCAAGAATTTGCTTCTCAAGAACATGTCGTCTTCAAGCTC 418
Query 406 TTACATGTCCAACCAAGAGATTCGAATACGGTTTCGACTACAAGAAAAGATTCCACCACA 465
||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||
Sbjct 419 TTACATGTCCAACCAAGAGATTCGAATTCGGTTTCAACTACAAGAAAAGATTTGACCACA 478
Query 466 AGTGTTTACAAGAAAGATGTTGATAGAAAAACCAGAGAGATGCTTCTTCCAAGCAGAGAC 525
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AGTGTTTACAAAAAAGATGTTGATAGAAAAACCAGAGAGATGCTTCTTCCAAGCAGAGAC 538
Query 526 ATGTTTGTTCATAGAGAGGTTCAATTGGATATAATGGTGCTTGAATCAGACGATGTAGCT 585
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 539 ATGTTTGTTCATAGAGAGGTTCAATTGGATATAATGGTGCTTGAATCAGACGATATAGCT 598
Query 586 GATGCAATCTCTAAAGCGGTTCAAGATCATGGAATTAGTGAGCTAGTCATTGGAGCTTCT 645
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GATGCAATCTCTAAAGCAGTTCAAGATCATGGAATTAGTGAGCTAGTCATTGGAGCTTCC 658
Query 646 TCTTCAATCATCTTCTCATGGAAGTTGAAGAGAAGCAACTTGTCTTCAAGAATTTCAGAT 705
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 659 TCTTCAATCATCTTCTCATGGAAGTTGAAGAGAAGCAACTTGTCTTCAAGAATTGCAGAT 718
Query 706 GCTACACCAAGATTTTGCACAATTCACGTTATCTCTAAAGGAAAGCTTCTCAATGTTCGT 765
|||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 719 GCTACACCAAGATTTTGCTCAGTTCATGTTATCTCTAAAGGAAAGCTTCTCAATGTTCGT 778
Query 766 AAATCCGATATGGACACCGAAACGAGCATTGCAGACGATAGAAGCGAAAGCCGGTTCTCT 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AAATCCGATATGGACACCGAAACGAGCATTGCAGACGATAGAAGCGAAAGCCGGTTCTCT 838
Query 826 TCAGATAGTCATTCAGGATCAGTAAGTTCGACATCGAGTCATCAATTCTCATCAAAACCT 885
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 839 TCAGATAGCCATTCAGGAACAGTAAGTTCGACATCGAGTCATCAATTCTCATCAACACCT 898
Query 886 TTACTCTTCCAAAGAGTCCAAGCACTTTCAACCGTCAACCAGAAGGTTGGAACCAACATT 945
|||||||||||| || ||||||| || ||||||| ||||||||||||||||| ||||||
Sbjct 899 TTACTCTTCCAACGAATCCAAGCCCTAACAACCGTGAACCAGAAGGTTGGAACAAACATT 958
Query 946 GGAAAACAGAACAATGATCAGCATCATCATCATCATAACAGAGCCGGGTCTCTAGACGAG 1005
||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |
Sbjct 959 GGAAAACAGAACAATGAACCGCATCATCATCATCATAACAGAGCTGGGTCTCTAGACGTG 1018
Query 1006 GATGAATCAAAGTTACTGAACCAGAAGGGCTTTTACCGAACAAGCAGCTCGGGCATTGGG 1065
||||||||||||||||||||||||||||||||||| |||||||||||||| || || |||
Sbjct 1019 GATGAATCAAAGTTACTGAACCAGAAGGGCTTTTATCGAACAAGCAGCTCCGGAATCGGG 1078
Query 1066 TATGGAGGAAGCGATATCAGCAGCTGGAGAAGCTCTCAGATGGAAGAGGCTTCAAGCTCA 1125
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1079 TATGGAGGAAGTGATATCAGTAGCTGGAGAAGCTCTCAGATGGAAGAGGCTTCAAGCTCA 1138
Query 1126 AGTACCTACAGTGACCCTACTTCATCTAGTAGCCAGGC-CAATAAAGACTTTGAATTAGA 1184
|||||||||||||||||||||||||||||||||||| || |||||||||||| |||||
Sbjct 1139 AGTACCTACAGTGACCCTACTTCATCTAGTAGCCAGATACA-TAAAGACTTTGAGTTAGA 1197
Query 1185 GAAGCTGAAGATTGAACTCCGTCACATTAAAGGAATGTATGCAGTTGCTCAAGGCGAAGT 1244
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1198 GAAGCTGAAGATTGAACTCCGTCACATTAAAGGAATGTATGCAGTTGCTCAAAGCGAAGT 1257
Query 1245 CATTGATGCTTCTAAAAAGATGCAAGATCTGAACCAGCGGCGATCAGAGGAAGCTATGAG 1304
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1258 CATCGATGCTTCTAAAAAGATGCAAGATCTGAACCAGCGGCGATCAGAGGAAGCTACAAG 1317
Query 1305 GCTCAAGAACTTAACGATAAGAGAAGAAGAAGCTGATGAAGTGGTAGAGATGGAAAAGGA 1364
||||||||||||||||||||||||||||||||| ||||||||||| || ||||| | |||
Sbjct 1318 GCTCAAGAACTTAACGATAAGAGAAGAAGAAGCGGATGAAGTGGTGGAAATGGAGAGGGA 1377
Query 1365 GAGACAAGAGGAAGCGGAAAATGAGGCTGAGCTTGTGAAAGAATGCATTgagagagaaac 1424
|||||||||||| |||||||| || |||||||| |||| |||||||||||||||||||||
Sbjct 1378 GAGACAAGAGGATGCGGAAAACGAAGCTGAGCTCGTGAGAGAATGCATTGAGAGAGAAAC 1437
Query 1425 cgaagagagacttgaggcggaagcaagagcggaagaggttagaaaagagaagCAGAGGCT 1484
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1438 CGAAGAGAGACTTGAGGCGGAAGCAAGAGCGGAAGAGGTTAGAAAAGAGAAGCAGAGGTT 1497
Query 1485 AGAGGATGCACTTGAAGGCGGACCGCTTCAACGCCAACAATACATGAAATTTGAGTGGGA 1544
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 AGAGGATGCACTTGAAGGTGGACCGCTTCAACGCCAACAATACATGAAATTTGAGTGGGA 1557
Query 1545 AGAGATCGTCAAGGCGACGTCATCCTTCTCCGATGA-CTTTAAGATCGGAGTGGGCGGTT 1603
|||||||||| ||||||||||||| ||||| ||||| ||| ||||||||||| || ||||
Sbjct 1558 AGAGATCGTCGAGGCGACGTCATCTTTCTCGGATGAACTT-AAGATCGGAGTCGGTGGTT 1616
Query 1604 ACGGAAGCGTATATCGGTGTAACTTGCATCACACGACAGTAGCTGTCAAGGTTCTTCATT 1663
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1617 ACGGAAGCGTATATAGGTGTAACTTGCATCACACGACAGTAGCTGTCAAGGTTCTTCATT 1676
Query 1664 CAGACAAAAGTAGCTTAACCAAACAGTTTCACCAAGAGCTTGAGATTCTTAGCAAGATTC 1723
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 CAGACAAAAGTAGTTTAACCAAACAGTTTCACCAAGAGCTTGAGATTCTTAGCAAGATTC 1736
Query 1724 GTCACCCACACTTGCTTCTCCTCCTAGGCGCGTGTCCTGAACGCGGCAGCTTAGTCTACG 1783
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1737 GTCATCCACACTTGCTTCTCCTCCTAGGCGCGTGTCCTGAACGCGGAAGCTTAGTTTACG 1796
Query 1784 AGTATATGCACAACGGAAGCCTCGAGGAAAGACTCATGAAACGCCGACCAAACGTTGACA 1843
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1797 AGTATATGCACAACGGAAGCCTTGAGGAAAGACTCATGAAACGCCGACCAAACGTTGACA 1856
Query 1844 CACCGCAACCACCGCCGTTACGGTGGTTCGAGCGGTTCCGAATCGCTTGGGAGATTGCTT 1903
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1857 CACCGCAACCGCCGCCATTACGGTGGTTCGAGCGGTTCCGAATCGCTTGGGAGATCGCTT 1916
Query 1904 CAGCTCTCTACTTTCTCCACACAAACGAACCAAGACCAATCGTTCACCGAGATCTTAAAC 1963
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1917 CAGCACTCTACTTTCTCCACACAAACGAACCAAGACCAATCGTTCACCGCGATCTTAAAC 1976
Query 1964 CGGCCAATATACTCCTAGACCGGAACAATGTGAGCAAAATCGGAGACGTAGGCCTCTCCA 2023
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1977 CAGCCAATATCCTCCTAGACCGGAACAATGTGAGCAAAATCGGAGACGTAGGCCTTTCCA 2036
Query 2024 AAATGGTTAATCTTGATCCTTCTCATGCCTCAACGGTTTTCAACGAAACCAGTCCAGTTG 2083
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2037 AAATGGTTAATCTTGATCCTTCTCATGCCTCAACGGTTTTCAACGAAACCGGTCCAGTTG 2096
Query 2084 GAACATTCTTCTACATTGATCCCGAATACCAAAGAACCGGAGTCGTAAC-CCCGGAATCT 2142
|||||||||||||||| ||||| |||||||||||||||||||| ||||| |||| |||||
Sbjct 2097 GAACATTCTTCTACATAGATCCTGAATACCAAAGAACCGGAGTGGTAACTCCCG-AATCT 2155
Query 2143 GATATTTACGCGTTTGGAATCATACTTCTTCAGCTAGTCACAGCTAGATCCGCCATGGGA 2202
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2156 GATATCTACGCGTTTGGAATCATACTTCTTCAGCTAGTCACAGCTAGATCCGCGATGGGT 2215
Query 2203 TTGGCTCATACGATAGAGAAAGCTTTAAGAGATCAAACCGGGAAATTTACAGAGATCTTG 2262
||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 2216 TTGGCTCATTCGATAGAGAAAGCGTTGAGAGATCAAACCGGGAAATTTACAGAGATCTTG 2275
Query 2263 GATAAAACTGCTGGAGATTGGCCGGTTAAGGAAGCGAAAGAGATGGTTATGATAGGACTT 2322
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 2276 GATAAAACTGCTGGAGATTGGCCGGTTAAGGAAGCTAAAGAGATGGTTATGATAGGGCTT 2335
Query 2323 AGATGTGCGGAGATGAGAAAGCGTGATCGTCCTGATTTAGGGAAAGAAATTTTGCCGGTT 2382
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2336 AGATGTGCAGAGATGAGAAAGCGTGATCGTCCTGATTTAGGGAAAGAGATTTTGCCGGTT 2395
Query 2383 CTTGAACGGTTAAAGGAAGTTGCGTCTAACGCAAGAAACATGTTTGCTGATAACGTAATT 2442
|||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 2396 CTTGAACGGTTAAAGGAAGTTGCGTCTATCGCAAGGAACATGTTTGCTGATAACCTAATT 2455
Query 2443 GATCATCACCATAACGCTCCGAACCATTTCTACTGTCCAATAACAAAGGATGTGATGGAG 2502
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2456 GATCATCACCATAACGCTCCGACCCATTTCTACTGTCCAATAACAAAGGATGTGATGGAG 2515
Query 2503 AATCCATGTGTTGCTTCGGATGGATACACGTATGAGAAGAGAGCGATTAAGGAATGGCTT 2562
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2516 AATCCATGTGTTGCTTCGGATGGATATACGTATGAGAAGAGAGCGATTAAGGAATGGCTT 2575
Query 2563 CAGAAGAATCATAAATCTCCAATGACGGATTTGCCCTTCCCTAATCATTCTCTTCTTCCT 2622
|||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||
Sbjct 2576 CAGAAGAATCATAAATCTCCAATGACGGATTTGCCCTTTCCTAGTGATTCTCTTCTTCCT 2635
Query 2623 AATCATTCTCTTCTTTCTGCAATTAAGGAGTGGAGATCAC---TAATTAAATAAATTAAT 2679
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 2636 AATCATTCTCTTCTTTCTGCAATCAAGGAGTGGAGATCACAACTAATTAAATAAATTAAT 2695
Query 2680 TAAAGGTTCAAGGTTTAATTTGTAGGGCTAAATTCATCAGTTAACATGCATTGTTGTGtt 2739
||||||||| || ||||| || |||||||||| ||| |||||||| || |||||| |
Sbjct 2696 TAAAGGTTC----TTAAATTTATACGGCTAAATTCGTCAATTAACATGAATCGTTGTGGT 2751
Query 2740 ttttttttttGTCATACCATTCTTGCCCACAAACGTTGATGAAATACTCGAGTTTTTGTG 2799
|||| |||| |||||||||||||||| ||||||||||||||||||| ||||| |||||||
Sbjct 2752 TTTTGTTTT-GTCATACCATTCTTGCGCACAAACGTTGATGAAATATTCGAGCTTTTGTG 2810
Query 2800 TGTAAAttttttt-ACCTTATTTGTTTGATTGTATTATAGGTTTTGGCTGCACATTTGCA 2858
||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 2811 TGTAAATTTTTTTTACCTTATTTGTTTGATTGTATTATAGGTTTTGACTGCATATTTGCA 2870
Query 2859 AGGAAAAA-ATAATAGTGTTGATTT 2882
|| || || ||||||||||||||||
Sbjct 2871 AG-AAGAATATAATAGTGTTGATTT 2894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 143226622265
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5