BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496326
Length=838
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61590.1 | Symbols: | Integrase-type DNA-binding superfamil... 1238 0.0
AT5G07580.1 | Symbols: | Integrase-type DNA-binding superfamil... 313 2e-84
> AT5G61590.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:24764438-24765324 REVERSE LENGTH=887
Length=887
Score = 1238 bits (670), Expect = 0.0
Identities = 765/809 (95%), Gaps = 14/809 (2%)
Strand=Plus/Plus
Query 44 ATGGCGACTTTTGAGGAAAGCTCTGATCTGGATGTTATACAGAAACATCTGTTTGAAGAC 103
|||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 67 ATGGAGACTTTTGAGGAAAGCTCTGATTTGGATGTTATACAGAAACATCTATTTGAAGAC 126
Query 104 TTGATGATCCCTGATGGTTTTATTGAAGATTTTGTCTTTGATGATACTGCTTTTGTCTCA 163
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 127 TTGATGATCCCTGATGGTTTCATTGAAGATTTTGTCTTTGATGATACTGCTTTTGTCTCC 186
Query 164 GGACTCTGGTCTTTAGAACCCTTTAACCCAGTTCCTAAACTGGAACCTAGTTCACCTG-- 221
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 187 GGACTCTGGTCTCTAGAACCCTTTAACCCAGTTCCGAAACTGGAACCTAGTTCACCTGTT 246
Query 222 --T--TCCAGATTCCTATGTCCAAGAGTTTCTGCAAATGGAAGCAG-A--ATCATCATCA 274
| |||||||||||||||||||||| |||||||||||||||||| | ||||||||||
Sbjct 247 CTTGATCCAGATTCCTATGTCCAAGAGATTCTGCAAATGGAAGCAGAATCATCATCATCA 306
Query 275 TCATCAACAACAACATCACCTGAGGTTGAGACTGTCTCAAACCGaaaaaaaaCAAAGAGG 334
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 307 TCATCAACAACAACGTCACCTGAGGTTGAGACTGTCTCAAACCGGAAAAAAACAAAGAGG 366
Query 335 TTTGAAGAGACGAGACATTACAGAGGCGTGAGAAGGAGGCCATGGGGGAAATTTGCAGCA 394
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 367 TTTGAAGAAACGAGACATTACAGAGGCGTGAGAAGGAGGCCATGGGGGAAATTTGCAGCA 426
Query 395 GAGATTCGAGATCCCGCGAAGAAAGGATCCAGGATTTGGTTAGGCACTTTTGAGAGTGAT 454
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 GAGATTCGAGATCCGGCAAAGAAAGGATCCAGGATTTGGTTAGGCACTTTTGAGAGTGAT 486
Query 455 ATTGATGCTGCAAGAGCTTATGACTATGCAGCTTTTAAGCTCAGGGGAAGAAAAGCTGTC 514
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 487 ATTGATGCTGCAAGGGCTTACGACTATGCAGCTTTTAAGCTCAGGGGAAGAAAAGCTGTT 546
Query 515 CTCAATTTTCCTTTGGATGCCGGGAAGTATGATGCTCCGGTCAATTCATGCCGAAAAAGG 574
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 547 CTCAACTTTCCTTTGGATGCCGGAAAGTATGATGCTCCGGTCAATTCATGCCGAAAAAGG 606
Query 575 AGGAGAAGCGATGTACCGCAGCCTCAAGGAACAACAACGAGTACTTCATCATCATCATCA 634
||||||| ||||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 607 AGGAGAACCGATGTACCACAGCCTCAAGGAACAACAACAAGTACTTCATCATCGTCATCA 666
Query 635 AACTAATGGG--AATAGTGATGTTTAATTAGTATATATAGGTTAATCTCTTAAGTATGTG 692
|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 667 AACTAATGGGGGAATAGTGATGTTTAATTAGTATATATAGGTTAATATCTTAAGTATGTG 726
Query 693 AAGCAT---GTATAGAGCCAAGAAAATATTAGATTAGTGTACTGaaaaaaaCTCTTGCAA 749
|||||| ||||||||||||||| | ||||| |||||||||||||| |||||||||||
Sbjct 727 AAGCATCATGTATAGAGCCAAGAACCTGTTAGACTAGTGTACTGAAAAGAACTCTTGCAA 786
Query 750 AATATGTACTAAAGAGTTCCTGTAACAATGGAACTTCTGTGTTTTCTCATGTCTTAAAGA 809
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 787 AATATGTACTAAAGAGTTCCTGTAACAATGGAACTTCTGCGTTTTCTCTTGTCTTAAAGA 846
Query 810 GCTTAAGGTTCTAGAAACAAAGTTCTTGT 838
|||||||||||||||||||||||||||||
Sbjct 847 GCTTAAGGTTCTAGAAACAAAGTTCTTGT 875
> AT5G07580.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:2399504-2400601 FORWARD LENGTH=1098
Length=1098
Score = 313 bits (169), Expect = 2e-84
Identities = 473/612 (77%), Gaps = 51/612 (8%)
Strand=Plus/Plus
Query 10 CACTTGCAGAtttttttCTTCTCCTGTCTTGTCTATGGCGACTTTTGAGGAAAGCTCTGA 69
|||||||||| || |||| ||| || || | ||||||| ||||||||||||||||||
Sbjct 192 CACTTGCAGA-TTCTTTC-TCT-CTTTCGTAAAAATGGCGAGTTTTGAGGAAAGCTCTGA 248
Query 70 TCTGGATGTTATACAGAAACATCTGTTTGAAGACTTGATGATCCCTGATGGTTTTATTGA 129
| |||| | |||||||| ||||| || ||||||||| || | ||||||||| || |
Sbjct 249 TTTGGAAGCTATACAGAGCCATCTCTTAGAAGACTTGTTGGTTTGTGATGGTTTCATGGG 308
Query 130 AGATTTTGTCTTTGATGATACTGCTTTTGTCTCAGGACTCTGGTCTTTAGAACCCTTTAA 189
|||||||| ||| |||| || |||||||||||||||| |||| | ||||| || |
Sbjct 309 AGATTTTGACTTCGATG---CTTCTTTTGTCTCAGGACTTTGGTGTATAGAA-CC----A 360
Query 190 CCCAGTTCCTAAACTGGAACCT-AGT-T-CA---CCTGTTCCAGATTCCTAT-GTCCAA- 241
| | |||||||||| |||||| | | | || | || ||| |||| || | || |||
Sbjct 361 CAC-GTTCCTAAACAAGAACCTGATTCTCCAGTTCTTGATCCGGATT-CTTTCGT-CAAC 417
Query 242 GAGTTTC-TGCAAATGGAAGCAGAATCATCATCATCATCA--A-CA-A-C--AA--CATC 291
||| ||| ||||| |||||| |||||||||||||||||| | || | | || ||||
Sbjct 418 GAG-TTCTTGCAAGTGGAAGGGGAATCATCATCATCATCATCACCAGAGCTGAATTCATC 476
Query 292 -ACCT-GAGGT-TGAGACTGTCTCAAACCG-aaaaaaaaCAAAGAGGTT------TGAAG 341
| | | | |||||||| ||| | | ||||| || ||||||| ||||
Sbjct 477 GTCATCAACATATGAGACTG-ATCAGAGTGTGAAAAAGGCAGAGAGGTTCGAAGAAGAAG 535
Query 342 -AGA--CGAGACATTACAGAGGCGTGAGAAGGAGGCCATGGGGGAAATTTGCAGCAGAGA 398
||| | ||||||||| |||| ||||| | ||||| ||||||||||||||||||||||
Sbjct 536 TAGATGCTAGACATTACCGAGGAGTGAGGCGAAGGCCGTGGGGGAAATTTGCAGCAGAGA 595
Query 399 TTCGAGATCCCGCGAAGAAAGGATCCAGGATTTGGTTAGGCACTTTTGAGAGTGATATTG 458
|||||||||| || ||||||||||| || || ||| |||| || |||||||||||| |||
Sbjct 596 TTCGAGATCCAGCAAAGAAAGGATCAAGAATCTGGCTAGGAACATTTGAGAGTGATGTTG 655
Query 459 ATGCTGCAAGAGCTTATGACTATGCAGCTTTTAAGCTCAGGGGAAGAAAAGCTGTCCTCA 518
||||||||||||| ||||||| ||||||||| |||||| ||||||||||||| || ||||
Sbjct 656 ATGCTGCAAGAGCCTATGACTGTGCAGCTTTCAAGCTCCGGGGAAGAAAAGCCGTGCTCA 715
Query 519 ATTTTCCT-TTGGATGCCGGGAAGTATGATGCTCCGGTC-AATTCATGCCGAAAAAGGAG 576
| || ||| ||| | |||||||| ||||| ||||| | | |||||| | | |||||||
Sbjct 716 ACTTCCCTCTTG-ACGCCGGGAAATATGAAGCTCCAG-CGAATTCAGGAAGGAAAAGGAA 773
Query 577 GAGAAGCGATGT 588
|||||| |||||
Sbjct 774 GAGAAGTGATGT 785
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40840361511
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5