BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496333
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61670.1 | Symbols: | Encodes a close homolog of the Caulif... 1781 0.0
> AT5G61670.1 | Symbols: | Encodes a close homolog of the Cauliflower
OR (Orange) protein. The function of OR is to induce
the differentiation of proplastids or other noncolored plastids
into chromoplasts for carotenoid accumulation. Both proteins
contain a Cysteine-rich zinc finger domain that is highly
specific to DnaJ-like molecular chaperons. | chr5:24783504-24785349
FORWARD LENGTH=1197
Length=1197
Score = 1781 bits (964), Expect = 0.0
Identities = 1058/1103 (96%), Gaps = 7/1103 (1%)
Strand=Plus/Plus
Query 35 ATCGATC-TGCTGCTGAAGATATCGAAAAGATGTCATCTTTGGGTAGGATTTTGTCTGTT 93
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 97 ATCGATCTTG-TGCTGAAGATATCGAAAAGATGTCATCTTTGGGTAGGATTTTGTCTGTT 155
Query 94 TCCTACCCACCGGATCCGTACACTCCGCGGTTTTCACAGTATAAGCTGTCTTCTTCACTA 153
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 156 TCCTACCCACCGGATCCGTACACTTGGCGGTTTTCACAGTATAAGCTGTCTTCTTCACTA 215
Query 154 CGGCGTACTCGGAGACTCAGATGGCGATTCACGGCGTTGGATCCTGAATCTTCCTCACTC 213
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 216 GGGCGAAATCGGAGACTCAGATGGCGATTCACGGCGTTGGATCCTGAATCTTCCTCACTC 275
Query 214 GACTCTGAATCCTCCGCCGATAAATTCGCTGCCGGGTTTTGTATAATAGAAGGGCCTGAA 273
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 276 GACTCTGAATCCTCCGCCGATAAATTCGCTTCCGGGTTTTGTATAATAGAAGGGCCTGAA 335
Query 274 ACAGTACAGGACTTTGCCAAAATGCAATTACAAGAGATTCAAGATAACATTCGAAGCCGA 333
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 ACAGTACAGGACTTTGCCAAAATGCAATTACAAGAGATTCAAGATAACATTCGAAGCCGA 395
Query 334 CGAAACAAGATCTTCTTGCACATGGAAGAGGTGCGGAGGCTAAGAATACAACAACGTATT 393
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 396 CGAAACAAGATCTTCTTGCACATGGAAGAGGTGCGGAGGCTAAGAATACAACAACGGATT 455
Query 394 AAAAACACAGAACTTGGTATCATAAACGAAGAACAAGAACATGAATTACCTAATTTCCCA 453
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 456 AAAAACACAGAACTTGGTATCATTAACGAAGAACAAGAACATGAATTACCTAATTTCCCA 515
Query 454 TCTTTTATCCCATTCTTACCTCCATTGACTGCTGCCAATTTGAAAGTCTATTACGCAACT 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 516 TCTTTTATCCCATTCTTACCTCCATTGACTGCTGCCAATTTGAAAGTCTATTACGCAACT 575
Query 514 TGTTTTTCACTCATCGCCGGGATTATCCTATTCGGTGGCCTACTAGCTCCTACTCTAGAG 573
||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 576 TGTTTCTCACTCATCGCGGGGATTATCCTATTCGGTGGTCTACTAGCTCCTACTCTAGAG 635
Query 574 CTGAAGTTAGGTATAGGAGGCACATCATATGCAGATTTCATTCAAAGCCTTCATCTTCCT 633
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||
Sbjct 636 CTGAAGTTAGGTATAGGAGGTACATCGTATGCAGATTTCATTCAAAGCCTTCATCTACCT 695
Query 634 ATGCAATTGAGTCAAGTGGATCCGATAGTAGCATCGTTTTCTGGAGGAGCGGTTGGTGTG 693
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 696 ATGCAATTGAGTCAAGTGGACCCGATAGTAGCGTCGTTTTCTGGAGGAGCGGTTGGTGTG 755
Query 694 ATTTCGGCTTTGATGGTAGTAGAAGTTAACAACGTAAAGCAGCAAGAGCACAAGAGATGC 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 ATTTCGGCTTTGATGGTAGTAGAAGTTAACAACGTAAAGCAGCAAGAGCACAAGAGATGC 815
Query 754 AAATACTGTCTAGGAACTGGGTATCTAGCATGTGCTCGTTGCTCTAGCACAGGTGCTCTT 813
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 AAATACTGTCTAGGAACTGGGTATCTAGCATGTGCTCGTTGCTCTAGCACAGGTGCTCTT 875
Query 814 GTTTTAACTGAACCAGTCTCAGCTATTGCTGGTATGAATCATTCTCTATCACCACCCAAA 873
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 876 GTTTTAACTGAACCAGTCTCAGCTATTGCTGGTGGGAATCATTCTCTATCACCGCCCAAA 935
Query 874 ACCGAAAGATGTTCAAACTGTTCAGGTGCCGGAAAGGTGATGTGCCCGACGTGTCTGTGC 933
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 936 ACCGAAAGATGTTCAAACTGTTCAGGTGCCGGAAAGGTGATGTGCCCGACATGTCTGTGC 995
Query 934 ACAGGAATGGCTATGGCGAGTGAGCACGATCCTCGTATTGATCCCTT-CGATTGAATCTA 992
||||||||||||||||| |||||||| ||||||||||| || ||||| ||||||||| |
Sbjct 996 ACAGGAATGGCTATGGCCAGTGAGCATGATCCTCGTATCGA-CCCTTTCGATTGAATTTT 1054
Query 993 -CTACAAATTCTACTTCCTCAGAATCTCGTTCTGGCAGTGTAACTAAAAATGGTATGTAC 1051
| ||| |||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 1055 GCAACACATTCTACTTCCTTAGAATCTCATTCTGTCAGTGTAACTAAAAATGGTATGTAC 1114
Query 1052 TGATGAAATAATTAGAATCGCATCCTTTGGTCTGTATATACACACAGAAATGAAGTTATA 1111
|||| |||||||||||| ||||| ||||| |||||||||||||||| | | ||||||||
Sbjct 1115 TGATTAAATAATTAGAACCGCATACTTTGATCTGTATATACACACA-AT-TAAAGTTATA 1172
Query 1112 ATACAATGTTAGATTTGTCTTCT 1134
||||||||||||| ||||||||
Sbjct 1173 ATACAATGTTAGACATGTCTTCT 1195
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5