BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496342
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61760.1 | Symbols: ATIPK2BETA, IPK2B, IPK2BETA | inositol p... 1749 0.0
> AT5G61760.1 | Symbols: ATIPK2BETA, IPK2B, IPK2BETA | inositol
polyphosphate kinase 2 beta | chr5:24813729-24815443 REVERSE
LENGTH=1201
Length=1201
Score = 1749 bits (947), Expect = 0.0
Identities = 1096/1168 (94%), Gaps = 9/1168 (1%)
Strand=Plus/Plus
Query 1 AACAAATACACTTCTTTTGCTATCGTTTGAGCA--TC-AAAATTTCTCCGGGGAGATTTG 57
||||| ||||||| ||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 24 AACAATTACACTTATTTTGCTATCGTTTGAGCATCTCAAAAATTTCTCCGGGGAGATTTG 83
Query 58 TTTGGTATATATACTCTTGCACAAAGAAGATGCTCAAGGTCCCCGAACACCAAGTTGCTG 117
||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct 84 TTT-GTATATATACTCTTCCACAAAGAAGATGCTCAAGGTCCCTGAACACCAAGTTGCTG 142
Query 118 GTCACATTGCTAGTGATGGGAAGCTAGGTCCACTCGTAGATGACCAAGGCCGATTCTTCA 177
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 143 GTCACATTGCTAGTGATGGGAAGCTCGGTCCACTCGTAGATGACCAAGGCCGGTTCTTCA 202
Query 178 AGCCACTTCAGGGAGATTCTCGTGGCCAACATGAGGCTAAGTTCTATGAGTCTTTCACAT 237
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 203 AGCCACTTCAGGGAGATTCTCGTGGCGAACACGAGGCTAAGTTCTATGAGTCTTTCACAT 262
Query 238 CGAACAAGAAGGTTCCAGATCTCATCCGTAGATACTTCCCGGTGTGTCACGGCACTCAGC 297
|||||| |||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 263 CGAACATGAAGGTTCCAGATCACATCCATAGATACTTCCCGGTGTATCACGGCACTCAGC 322
Query 298 TAGTTGAAGCATCTGATGGATCTGGCAAGCTTCCTCATCTTGTTCTTGATGATGTTGTTT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 323 TAGTTGAAGCATCTGATGGATCTGGCAAGCTTCCTCATCTTGTTCTTGATGATGTTGTTT 382
Query 358 TTGTGTACTCAAATCCGTCGGTAATGGATGTTAAGATTGGATCTAGGACATGGTACCTGG 417
| |||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 383 CAGGGTACGCAAACCCGTCGGTAATGGATGTTAAGATTGGATCTAGGACATGGTACCCGG 442
Query 418 ATGTATCCGAAGAATACTTCAAGAAATGTATTAAGAAAGATAGACAGACCACCACGGTGT 477
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 443 ATGTATCAGAAGAATACTTCAAGAAATGTATTAAGAAAGATAGACAGACCACCACGGTTT 502
Query 478 CGTTGGGATTCAGGGTTTCGGGTTTTAAGATTTTTGACCACCAAGAATCAAGTTTCTGGA 537
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 503 CGTTGGGGTTCAGGGTTTCAGGTTTTAAGATTTTTGATCACCAAGAATCAAGTTTTTGGA 562
Query 538 GAGCTGAGAAGAAGCTTGTTCTTGGGTACAATGCGGATGGCGCTAGATTGGCTCTGCGGA 597
|||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |||
Sbjct 563 GAGCTGAGAAGAAGCTTGTTCTTGGGTATAATGCAGATGGTGCTAGATTGGCTCTGAGGA 622
Query 598 ACTTTGTGTCATCAAACTCGCCCGCTGACTCTAACTTGACTCCAAACTGTGCTTTTGTAT 657
| ||||||||||| ||||| |||||||||||||||||||| |||||||||||||||| ||
Sbjct 623 AGTTTGTGTCATCGAACTCTCCCGCTGACTCTAACTTGACACCAAACTGTGCTTTTGCAT 682
Query 658 CAGAGGTTTATGGTGGTTCTAATGGGATCTTAGCGCAGTTGTTGGAGCTTAAAGATTGGT 717
||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 683 CAGAGGTTTATGGCGGTTGTAACGGGATCTTAGCGCAGTTGTTGGAGCTTAAAGATTGGT 742
Query 718 TCGAAAGCCAAACGCTTTACCATTTCAATTCTTGCTCAATTCTGATGATTTTCGAGAACG 777
|||||| |||||||||||||||||||||||| ||||| ||||||||||||| |||||| |
Sbjct 743 TCGAAACCCAAACGCTTTACCATTTCAATTCCTGCTCGATTCTGATGATTTACGAGAATG 802
Query 778 AATCGATCTTGATGAAAGAAGGAGATGATGCACCGG-AGGCACGTGCACAAGTAAAGCTG 836
|||| ||||||||| ||| ||||||||||||||||| | |||| |||||||| ||||||
Sbjct 803 AATCAATCTTGATGCAAGGAGGAGATGATGCACCGGCAC-CACGGGCACAAGTGAAGCTG 861
Query 837 GTGGATTTCGCGCATGTTCTTGACGGAAACGGTGTCATCGACCATAATTTCTTGGGTGGA 896
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 862 GTGGATTTCGCGCATGTTCTTGATGGAAACGGTGTCATCGACCATAATTTCTTGGGTGGA 921
Query 897 CTCTGCTCTTTCATAAAGTTCATCAAAGATATCCTTCAGAGCGTAGACAAGCGCGATGAA 956
|||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||
Sbjct 922 CTCTGCTCTTTCATAAAGTTCATCAAAGATATTCTTCAGAGCGTTGAAAAGCACGATGAA 981
Query 957 ACCGATACTTCCCTACTTGAGAACGGGCACTAGACAAACGTCGTTCTTCCCGGCTCCATT 1016
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 982 ACCGATACTTCCCTACTTGAGAACGGGCGCTAGAGAAACGTCGTTCTTCCCGGCTCCATT 1041
Query 1017 TCAAATAATCTCCAAGTTTTTCCTTAGTTGGATTAATTGG-TTTTGGACATAAACGTTTG 1075
||||||||||||||||||||||||| ||||| || |||| |||||||||| ||||||||
Sbjct 1042 TCAAATAATCTCCAAGTTTTTCCTTTCTTGGACTAGTTGGGTTTTGGACATGAACGTTTG 1101
Query 1076 TCCCTTTCAATTGTATAATTTCGTTAACCAAACCATTGTACTTTCTCATTAGAGGAAA-A 1134
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
Sbjct 1102 TCCCTTTCAATTGTATAATTTCGTTAACTAAACCATTGTACTTTCTCATTAGAG-AAATA 1160
Query 1135 TATCGAAAGTTTCATGGAATTAAGCTAA 1162
|||||| ||||||||| || ||||||||
Sbjct 1161 TATCGAGAGTTTCATGAAAGTAAGCTAA 1188
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5