BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496351
Length=1675
Score E
Sequences producing significant alignments: (Bits) Value
AT5G61820.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2324 0.0
> AT5G61820.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING:
15 growth stages; CONTAINS InterPro DOMAIN/s: Stress up-regulated
Nod 19 (InterPro:IPR011692); Has 30201 Blast hits to
17322 proteins in 780 species: Archae - 12; Bacteria - 1396;
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0;
Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:24834317-24836694
REVERSE LENGTH=1688
Length=1688
Score = 2324 bits (1258), Expect = 0.0
Identities = 1550/1687 (92%), Gaps = 36/1687 (2%)
Strand=Plus/Plus
Query 1 TCATTACGATAGCGGGAAACTCAT-CGGCCTCTGGAAATTTCCGTTTATCCGATTCCTAC 59
|||| || |||||||||||||||| |||| |||||||||||||||||||||||||| | |
Sbjct 6 TCATCACAATAGCGGGAAACTCATCCGGCTTCTGGAAATTTCCGTTTATCCGATTCGTTC 65
Query 60 TCACGAGATGATGGCTCGTTACCTCAGGAGATCGCTGATCTTGTTCTTAGTTCTGGTCTC 119
||||||||||||||||||||||| |||||||||| ||||||||| |||||||||| ||||
Sbjct 66 TCACGAGATGATGGCTCGTTACCACAGGAGATCGATGATCTTGTGCTTAGTTCTGCTCTC 125
Query 120 ATTAACCATATCCCCTAGCCAAGGCTTTCTAGGGACAGA-GAGAAAGATCAAATCTGCAG 178
||||| |||||| || ||||||||||| ||||||||||| || |||||||||||| || |
Sbjct 126 ATTAAGCATATCGCCGAGCCAAGGCTTCCTAGGGACAGAGGA-AAAGATCAAATCCGCTG 184
Query 179 TCTTTTTCTCACCCAAACTGGTGATGAATCCTGGATCAGTCGCAAATCCTTACTTATTCG 238
|||||| |||||| ||||| ||||||||||| |||||||| |||||||||||||||||||
Sbjct 185 TCTTTTACTCACCAAAACTTGTGATGAATCCAGGATCAGTTGCAAATCCTTACTTATTCG 244
Query 239 ACATCGATTTCCCAAGAGGTCACATCGGCCTCAAAGCTTTCGATGCTGAAGTGGTTGACG 298
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 245 ACATCGATTTCCCAAGAGGTCATATCGGCCTCAAAGCTTTCGATGCTGAAGTGGTTGACG 304
Query 299 ATGCGGG-AAATCCCGTCCCTCTACACGAAACATATCTTCACCATTGGATTATCGAACCT 357
| ||||| ||| ||||| ||||||||||| || ||||| |||||||||||| |||| ||
Sbjct 305 AAGCGGGCAAA-CCCGTTCCTCTACACGAGACCTATCTCCACCATTGGATTGTCGAGCCA 363
Query 358 TACTATGTTCGTAAAGGTTCTAAGCTTCCACAGCGAGAAATGTTTAGGAATCACGGATTT 417
|||||||| ||||||||||| |||||||||||| |||||||||| |||||||| ||||||
Sbjct 364 TACTATGTACGTAAAGGTTCCAAGCTTCCACAGAGAGAAATGTTCAGGAATCATGGATTT 423
Query 418 TCGAGGCAAGATCCTGGAAGCAATCTTGATTCGAAATCGGATATTATTCTTGTGAAAAAC 477
|| ||| ||||||||| ||||||||||||||| || || ||||||||||||||||||||
Sbjct 424 TCCAGGGAAGATCCTGAAAGCAATCTTGATTCCAAGTCAGATATTATTCTTGTGAAAAAT 483
Query 478 GGAGGCTTGTGTAGGAGTGTAGTACTTAGACATTACTTTGGTTTAGGATCAGAAACCCGC 537
||||| ||||| |||||| || ||| ||||||| |||||||||||||||||||||||||
Sbjct 484 GGAGGGTTGTGCAGGAGTTTAACACTCAGACATTTCTTTGGTTTAGGATCAGAAACCCGC 543
Query 538 AAAACCTCGACGTATCTTCCTGATCCCTACGCAATTGAAATCGGTAATCCTGAGGAAACA 597
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 544 GAAACCTCGACGTATGTTCCTGATCCCTACGCTATTGAAATCGGTAATCCTGAGGAAACA 603
Query 598 CCTGATGGATATGAATTCAAATGGCTTCTTAACATTCACGCGATAGACACGAGAGGTGTT 657
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 604 CCTGATGGTTATGAATTCAAATGGCTTCTTAACATTCACGCGATAGACACCAGAGGTGTG 663
Query 658 GAAGATAAGAAAGGATGCATAGAATGCCTT-TGTCATCTGTATAATGTAACCATTGATGA 716
|||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||
Sbjct 664 GAAGATAAGAAAGGATGCATAGAATG-TTTGTGTGATCTGTATAATGTTACCATTGATGA 722
Query 717 GTACGGTCGAGCTATAAGACCCGGTTACAAAGGAGGTTTATACTGCTGCTATGATAAGAC 776
||| |||||||||||||| || || |||||||||||||||||||||||||||||||||||
Sbjct 723 GTATGGTCGAGCTATAAGGCCTGGATACAAAGGAGGTTTATACTGCTGCTATGATAAGAC 782
Query 777 TCAATGTCGGGTGAAAAGCGGATTTGACAATGGGGAGAAAACAAGAACTCTGTATTTGAA 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 TCAATGTCGGGTGAAAAGCGGATTTGACAATGGGGAGAAAACAAGAACTCTGTATTTGAA 842
Query 837 GTATACCGTGAGATGGGTTGATTGGGACAGCTCGGTTTTGCCCGCTAAGGTTTATATTTT 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 843 GTATACCGTGAGATGGGTTGATTGGGACAGCTCGGTTTTGCCCGCTAAGGTTTATATTTT 902
Query 897 CGATGTTACGGATTCTTGGGAAAGATCAGAGGGATCAATAGAAAATAGCCAAGAACATAT 956
||||||||| |||||||||||||||||| | ||| || |||||||||||||||
Sbjct 903 CGATGTTACAGATTCTTGGGAAAGATCAAAAGGA------GA---TAGCCAAGAACATAT 953
Query 957 TTGCCATGTGGAATACGAGGTGAAACCGTGCAAAACCAATGGCGATGGATGCATTGATGT 1016
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 954 TTGCCATGTGGAATACGAGGTGAAACCGTGCAAAACCAATGGCGATGGATGCGTTGACGT 1013
Query 1017 TAGGAAAAAGAGCTTAATGATGCCATTTAATGGGTATATTGTCTACGGCGTAGCTCACCA 1076
|| ||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 1014 TAAGAAAAAGAGCTTAGTGATGCCATTTGATGGGTATATTGTCTACGGGGTAGCTCACCA 1073
Query 1077 GCACGCGGGTGGTATCGGTGGTGCTCTATACCGAGAGAACGGTGAAGGAATATGCACTTC 1136
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1074 GCACGCTGGTGGTATCGGTGGTGCTCTATACCGAGAGAACGGTGAAGGGATATGCGCTTC 1133
Query 1137 GATGCCGAAGTATGGCAATGGAGATGAACCTGGAAACGAAGCTGGTTACATTGTTGGAAT 1196
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 AATGCCGAAGTATGGCAATGGAGATGAACCTGGAAACGAAGCTGGTTACATTGTTGGAAT 1193
Query 1197 GTCGTCTTGTTATCCTGCTGATCCAGTGAAAGTGAGCTATGGAGAGACATTGAACTT-GG 1255
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1194 GTCGTCTTGTTATCCAGCTGATCCAGTGAAAGTGAGCTATGGAGAGACATTGA-CTTTGG 1252
Query 1256 AGTTTAATTACAGTAATGACGTTGGTCATACGGGAGTTATGGGACTCTTTTACATCCTCG 1315
| | |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1253 AATCTAATTACAGTAATGCCGTTGGTCATACCGGAGTTATGGGACTCTTTTACATCCTCG 1312
Query 1316 TTGCTCAGCAGCTGCCTGAACCAGAGAACTCCTTGCCTAA-A--CT---TTTTGAGGCAC 1369
|||||||||||||||| |||||||| | |||||||||||| | | |||||||||||
Sbjct 1313 TTGCTCAGCAGCTGCCGGAACCAGATAGCTCCTTGCCTAATAAACAACATTTTGAGGCAC 1372
Query 1370 CTGCGAGAAGCTTGAGCTTTTTAGCCATTTTTGCAGTGACAGTGGTGGTGGCGGTTGTGG 1429
|||||||||||||||||||||||||||||||||||||||| || || ||||| |||||||
Sbjct 1373 CTGCGAGAAGCTTGAGCTTTTTAGCCATTTTTGCAGTGACGGTAGTTGTGGCTGTTGTGG 1432
Query 1430 TTCTAATTGCCGTCGTGATACACCGGAGGCAGAACCGGGAAGATGGTTACCAATCACTTA 1489
|| |||| |||| ||||||| ||||||| ||||| |||||||||||||||||||||||||
Sbjct 1433 TTTTAATAGCCGCCGTGATATACCGGAGACAGAAACGGGAAGATGGTTACCAATCACTTA 1492
Query 1490 GTACTTaaaaaaaGAGCAAAA-CCATGTCGACTATATATATTTCTCCAAAGTGAATTTTG 1548
|||||||||||| |||||||| ||||||||||| ||||||| ||| ||||||||||| ||
Sbjct 1493 GTACTTAAAAAA-GAGCAAAAACCATGTCGACTCTATATATGTCTTCAAAGTGAATTCTG 1551
Query 1549 TTTGTTGTATACATAGAATAAATGATTATTTTGCTGTCATCTTCCTCTGATGTGATATTT 1608
||||| |||||||||||||| |||||||||| |||||||||||||||||||||||| |
Sbjct 1552 TTTGT---ATACATAGAATAAAAGATTATTTTGTTGTCATCTTCCTCTGATGTGATATCT 1608
Query 1609 CTGTAATGTTACGTACTTACGTGTAAGAAGAACTTTTCTTTCTCAAATACATCACATTCA 1668
||||||| | || | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1609 CTGTAAT---A-GT--T-ACGTGTAAGAAGAACTTTTCTTTCTCAAATACATCACATTCA 1661
Query 1669 CAGAATA 1675
|| ||||
Sbjct 1662 CACAATA 1668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82780698705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5