BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496360 Length=2571 Score E Sequences producing significant alignments: (Bits) Value AT5G61910.1 | Symbols: | DCD (Development and Cell Death) doma... 3415 0.0 > AT5G61910.1 | Symbols: | DCD (Development and Cell Death) domain protein | chr5:24860657-24864168 REVERSE LENGTH=2765 Length=2765 Score = 3415 bits (1849), Expect = 0.0 Identities = 2357/2592 (91%), Gaps = 75/2592 (3%) Strand=Plus/Plus Query 1 CTAGGGTTTCAAAATCCGGT--AA-CGATGGAGACAGAGATGGAGTTCTCTGATGGTGAA 57 |||||||||||| ||||| | || |||||||||| |||||||| ||||| ||||||||| Sbjct 189 CTAGGGTTTCAATATCCGATAAAAGCGATGGAGACGGAGATGGATTTCTCAGATGGTGAA 248 Query 58 CAAACTAATGCTAATGCACATGTTACCGCCTCCCAATACTTTGCTTCTCCGGTTTATAAT 117 |||||||||| |||| |||||||||| |||||||||||||||||| |||||| ||||||| Sbjct 249 CAAACTAATGGTAATTCACATGTTACTGCCTCCCAATACTTTGCTCCTCCGGGTTATAAT 308 Query 118 AGAAGTCTTGTGGCTGC-T-T----ATGGAAACTCCGCCGTTGGATTAGAAAAAGGGATA 171 ||||||||||||||||| | | |||||||| | || |||||||||||||||| ||| Sbjct 309 AGAAGTCTTGTGGCTGCTTATGGGAATGGAAACACAACCATTGGATTAGAAAAAGGAATA 368 Query 172 GAAACGATAC-AGGATCATCAGGAG-AACCTACCTGGTTATATCTTTATGTGTAATGGGA 229 |||| || || | |||||||| ||| || ||||||||||||||||||||||||||||||| Sbjct 369 GAAAGGAGACTA-GATCATCATGAGCAA-CTACCTGGTTATATCTTTATGTGTAATGGGA 426 Query 230 GAACCAAAACCGATTGCTACCGCTACCGCGTTTTCGGGATTCCAAGAGGAAGAAAAGACG 289 |||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| Sbjct 427 GAACGAAAACCGATTGCTACCGTTACCGTGTTTTCGGGATTCCAAGAGGAGGAAAAGACG 486 Query 290 TTGTTGAGAGTATAAAACCAGGCATGAAGCTTTTCCTCTATGACTTTGAGAAGAGACTTC 349 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 487 TTGTTGAGAGTATAAAGCCAGGCATGAAGCTTTTCCTCTATGACTTTGAGAAGAGACTTC 546 Query 350 TTTATGGTGTCTATGAAGCTACTGTTGGTGGCAGGTTGGATATAGAACCTGAAGCTTTTG 409 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 547 TTTATGGTGTGTATGAAGCTACTGTTGGTGGCAGGTTGGATATAGAACCTGAAGCTTTTG 606 Query 410 ATA-AGAAATATCCAGCTCAGGTTGGATTTAGAATTGTCATGAACTGTCTT-CCCTTGCC 467 | | ||||||||||||||| ||||||||||||||||||||||||||| || |||||| | Sbjct 607 A-AGGGAAATATCCAGCTCAAGTTGGATTTAGAATTGTCATGAACTGT-TTACCCTTGAC 664 Query 468 AGAAAACACTTTTAAGTCTGCTATCTATGAAAATTACAAAGGTTCCAAATTTAAGCAAGA 527 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 665 AGAAAACACTTTCAAGTCTGCTATCTATGAAAATTACAAAGGTTCCAAATTTAAGCAAGA 724 Query 528 ACTTTCTCCTCACCAAGTTATGTCTCTGTTATCATTGTTTCGTCCATTTACTTCTCCAGA 587 ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| Sbjct 725 ACTTTCTCCTCACCAAGTTATGTCTCTGTTATCATTGTTTCGTTCATTTACGTCTCCAGA 784 Query 588 ACTCGATTTGTTGCCTAATAGGTTGGCTTACAGAGCTTCAGCACCTAGGACTCTATCTTT 647 |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || Sbjct 785 ACTCGATTTGTTGCCTCATAGGTTGGCTTCCAGAGCTTCAGCACCTAGGACTCTATCGTT 844 Query 648 TGAGGAAAGGTTCATAGCGGCTACACAAGTTAGAAATGCTTCATCGGTTTTAGATCCTCT 707 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 845 TGAGGAAAGGTTCATAGCGGCTACACATCTTAGAAATGCTTCATCGGTTTTAGATCCTCT 904 Query 708 GTCTGCTCGTCATGCAGAACCACGACTTGGCTCTCTTATGGCCCATCAGTCTGTTCCCCG 767 |||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 905 GTCTGCTCGTCATGTAGAACCACGACTTGGCTCTGTTATGGCCCATCAGCCTGTTCCCCG 964 Query 768 CACATCTCTACTCCAACATAGTTACTCTAGACAAGACGACTACACAACCCCACCTAGAGA 827 ||||||||| || ||||||||||||| |||||||||||||||||| |||||||||||||| Sbjct 965 CACATCTCTGCTTCAACATAGTTACTTTAGACAAGACGACTACACGACCCCACCTAGAGA 1024 Query 828 AAGTCTGTCAAATTTGAATCAGCCTTATTATCCTACAGAAGCTCGGCAGCAACGGTTGCT 887 |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1025 AAGTCTGTCAAATTTGAATCAGCCTTATTATCCTACAGAAGCTCGGCAACTACGGTTGCT 1084 Query 888 CGGAGACCCGTCTCGGTCAGATCCTCCTCGGTCAGAACCTCTGCGGTCATCTATACAGGA 947 ||||||||| ||||| |||||| |||||||||| ||||||| |||||||||||| ||||| Sbjct 1085 CGGAGACCCTTCTCGCTCAGATTCTCCTCGGTCCGAACCTCCGCGGTCATCTATTCAGGA 1144 Query 948 CCCTCAACTCAAATACCTAACCATTTTATCTAATATTCGGAGATATGGATCTGCCTCAGA 1007 ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 1145 TCCTCAACTCAAATACCTCACCATTTTATCTAATATTCGGAGATATGGATCTGCATCAGA 1204 Query 1008 TCGCTTGGCCTCAGAAAATGAATATTATCCGACAACACCATCAGAGAAGGACCAGTTTGC 1067 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1205 TCGCTTGGCCTCAGAAAATGAATATCATCCGGCAACACCATCAGAGAAGGACCAGTTTGC 1264 Query 1068 T-TCACCTTATTCCGATAATAAATATTACCCCTCGACATTATCTGCGAATGAGCATCCTT 1126 | | ||||||||| ||||||||| ||||||| ||||| ||||||| || ||||||||||| Sbjct 1265 TGT-ACCTTATTCTGATAATAAAAATTACCCTTCGACTTTATCTGGGAGTGAGCATCCTT 1323 Query 1127 CTGCTTCTGCAGCTAATGGGAGTGTGTATAGAAGTGAGTTCTATACTTCAGCATCACAAA 1186 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1324 CTGCTTCTGCAGCTAATGGGAGTGTGTATAGAAGTGAGTTCTATAATTCAGCATCACAAA 1383 Query 1187 AAGAAGGGGAAGCTAGTCAGCAGCATGAGATCCCTTCTGGGACTTACAATCATCCAGAAG 1246 | ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||| Sbjct 1384 AGGAAGGGGAAGCTAGTCAGCAGCATGAGATCCCTGCTGGGACTTACCATCACCCAGAAG 1443 Query 1247 CATCTACAGTTTCAAATACTACAGTGTCCATCCAACCAGATATACAGGCAGTTAGTGTTG 1306 |||| |||||||| ||||||||| |||||| ||||||||||| |||||||||||||||| Sbjct 1444 CATCAACAGTTTCCAATACTACAAAGTCCATGCAACCAGATATGCAGGCAGTTAGTGTTG 1503 Query 1307 CTCAATCTCATACCGAGACAGCTGGCTATCCTACACCGGTACATGGTGAAGCTTCACAAC 1366 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1504 CTCAATCTCATACCGAGACAGCTGGCTATCCTACACCGGCACATGGTGAAGCTTCACAAC 1563 Query 1367 CACCTGCTGTAGCAATTGGTTACACACACCAACCTCAAACTGTAGCGGGTAATTATAGCA 1426 ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1564 CACCTGCTGGAGCAATTGGTTACACACACCAACCTCAAAGTGTAGCGGGTAATTATAGCA 1623 Query 1427 CGAATTCACAGCCTGGGAATGTGGAAGAAAGTACACTATCATATGCTGGAACAGATAGTT 1486 || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1624 CGCATTCACAGCCTGGGAATGTGGAAGAAAGTACACAATCATATGCTGGAACAGATAGTT 1683 Query 1487 ACTCACAACAGCAATATTATGCAGCTATGGGGCATACTACTCAACTCTATGCTGGTGGAA 1546 ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| Sbjct 1684 ACTCACAACAGCAATATTATGCAGCTATGGGGCCTACTACTCAACTCCATGCTGGT---- 1739 Query 1547 CCGGATATATTCAAAAACCCCATGAAATTGGGTACGCTCAGCAACCCCATGCTGCAGCAA 1606 ||||||||||||||||| ||||||||||||||| |||||||||| |||| ||| |||| Sbjct 1740 --GGATATATTCAAAAACCTCATGAAATTGGGTACTCTCAGCAACCTCATGATGCGGCAA 1797 Query 1607 CCGGGTACTCTCAGCAACCTCATGCTGCAGCAACCGGGTACTCCCAGGTACCCT-ATGCT 1665 |||||||||||||||||||||||| |||||||||||||||||| || | | ||| ||| | Sbjct 1798 CCGGGTACTCTCAGCAACCTCATGATGCAGCAACCGGGTACTCTCA-GCAACCTCATGAT 1856 Query 1666 GCAGCAACCGGGTACTCCCAGGTACCCT-ATGATGCAGCAACCGGGTACTCCCAGCAACC 1724 ||||||||||||||||| || | | ||| ||| ||| ||||||||||||| |||||| | Sbjct 1857 GCAGCAACCGGGTACTCTCA-GCAACCTCATGCCGCATCAACCGGGTACTCTCAGCAAAC 1915 Query 1725 CTATGCTGCAGCAACCGGGTACTCTCAGCAACCCTATGCTGCAGCAACCGGGTACTCTCA 1784 |||||||||||||||||||||| ||||||||||| |||| || ||| |||||||| |||| Sbjct 1916 CTATGCTGCAGCAACCGGGTACACTCAGCAACCCCATGCGGCGGCAGCCGGGTACACTCA 1975 Query 1785 GCAACCCCATGCTGCCACAGCCGGGTATTCTCAGCAACCCCATTCTGCAGCGACTGCGCA 1844 |||||||||||| || || ||||||||||||||||||||||| ||||||| || ||||| Sbjct 1976 GCAACCCCATGCGGCGGCAACCGGGTATTCTCAGCAACCCCATGCTGCAGCTACCGCGCA 2035 Query 1845 CGCTCAGCAACCCCATGCTGCAGCGACTGCGCACGCTCAGCAACCCCATGCTGCAGCGAC 1904 ||||||||||||| ||||||||||||| |||||||||||||||| |||||||| ||| || Sbjct 2036 CGCTCAGCAACCCTATGCTGCAGCGACCGCGCACGCTCAGCAACTCCATGCTGTAGCTAC 2095 Query 1905 CGCGCACGCTCAGCAACCT-CATTCTGCAGCGACCGCGCACGCT---C-A----A---T- 1951 | | | |||| |||| || ||| ||||||| |||| | ||||| | | | | Sbjct 2096 TGGGTATGCTCTGCAA-CTCCATGCTGCAGCTACCGGGTACGCTCAGCAACCCCATGCTG 2154 Query 1952 ACACAAC-----A-------CAACCACATGCTCAAGCTGTTGAATACACAATGCAACCAC 1999 | |||| | |||||||||||||||||||||||||||||||||||||||| Sbjct 2155 CCGCAACTGGGTATGCTTTGCAACCACATGCTCAAGCTGTTGAATACACAATGCAACCAC 2214 Query 2000 ATGCTCAAGCTGTTGGTTACATGCCGCAATACCATGCTCAAACTGGCGTATACAGTCAAC 2059 |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||| Sbjct 2215 ATGCTCAAGCTGTTGGCTACATGCCGCAATACCATGCTCACGCTGTTGTATACAGTCAAC 2274 Query 2060 AAGGTGTAACGCAAGGTTCTGTACCAGGGGCTCCTGGGACAGCTGATTGGAATGCTGCAA 2119 ||||||| |||||||||||||||||| |||||||||||||| ||||||| |||||||||| Sbjct 2275 AAGGTGTGACGCAAGGTTCTGTACCAAGGGCTCCTGGGACAACTGATTGTAATGCTGCAA 2334 Query 2120 ACCAGGCATATTCTGCAACAGGAGATTGGAATGCGGTGAATCAGTCTTATTACCCTCACA 2179 |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| | Sbjct 2335 ACCAGGCATATTCTGCAACAGGAGATTGGAATGCAGTGCATCAGTCTTATTACCCTCAGA 2394 Query 2180 CAGCAGATGCAACCACAACCTATTATCAAACATCTTAAAACGTGAAAGCAAAGTGTTACT 2239 ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| || Sbjct 2395 CAGCAGATGCAACCACAACGTATTATCAAACATCTTAAAACGTTAAAGCAAAGTGTTGCT 2454 Query 2240 AATCTGGTGATCTGAGCAACTTGTGTGTGGTGGG-GAA-AAGCATGGACTCAAACTGATG 2297 | ||||| ||||||| |||||||| ||| |||| | |||||||||||| ||||| || Sbjct 2455 ACTCTGG--ATCTGAGAAACTTGTGCGTGATGGGTGCGGAAGCATGGACTCGAACTGGTG 2512 Query 2298 CGCTCACTGGACAATAAGGTCAAGGACATAAAAGCTAGAGTCTCCAGCTCCGTTTACTGT 2357 | |||| |||| || |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2513 CACTCAGTGGAAAAGAAGGTCAAGGACATAAAA-CTAGAGTCTCCAGCTCCGTTTACTGT 2571 Query 2358 AAGTTTAAAAGTTCTACGTTATGGTTTGATCATATTCAT----GAG--G---A--A--A- 2403 |||||||||||||||| |||| ||||||||||||||||| ||| | | | | Sbjct 2572 AAGTTTAAAAGTTCTATGTTACGGTTTGATCATATTCATTTCTGAGCTGCGCATGAGGAA 2631 Query 2404 -TTCCTCAAAACATCAAAATTTCTCTAAGTCCCGCTTCAGGAGTGCAATCTGAAATGCAA 2462 ||||||||| |||||||| |||| ||||||||| ||||||||||||||||||||||||| Sbjct 2632 ATTCCTCAAACCATCAAAACTTCTTTAAGTCCCGTTTCAGGAGTGCAATCTGAAATGCAA 2691 Query 2463 TTCTGATTGGGATTTAAAGTTAATAAAACATATTATAACTCTGTTATCATTACTTATCCT 2522 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2692 TTCTGATTGGGATTTAAAGTTAATAAAACATATTATAACTCTGTTATCATTACTTATGCT 2751 Query 2523 AAAACATTTCTT 2534 |||||||||||| Sbjct 2752 AAAACATTTCTT 2763 Score = 375 bits (203), Expect = 8e-103 Identities = 289/330 (88%), Gaps = 8/330 (2%) Strand=Plus/Plus Query 1609 GGGTACTCTCAGCAACCTCATGCTGCAGCAACCGGGTACTCCCAGGTACCCT-ATGCTGC 1667 |||||||||||||||||||||| ||| |||||||||||||| || | | ||| ||| ||| Sbjct 1767 GGGTACTCTCAGCAACCTCATGATGCGGCAACCGGGTACTCTCA-GCAACCTCATGATGC 1825 Query 1668 AGCAACCGGGTACTCCCAGGTACCCT-ATGATGCAGCAACCGGGTACTCCCAGCAACCCT 1726 ||||||||||||||| || | | ||| |||||||||||||||||||||| |||||| ||| Sbjct 1826 AGCAACCGGGTACTCTCA-GCAACCTCATGATGCAGCAACCGGGTACTCTCAGCAA-CCT 1883 Query 1727 -ATGCTGCAGCAACCGGGTACTCTCAGCAACCCTATGCTGCAGCAACCGGGTACTCTCAG 1785 |||| ||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1884 CATGCCGCATCAACCGGGTACTCTCAGCAAACCTATGCTGCAGCAACCGGGTACACTCAG 1943 Query 1786 CAACCCCATGCTGCCACAGCCGGGTATTCTCAGCAACCCCATTCTGCAGCGACTGCGCAC 1845 ||||||||||| || |||||||||| |||||||||||||| | || || || | | | Sbjct 1944 CAACCCCATGCGGCGGCAGCCGGGTACACTCAGCAACCCCATGCGGCGGCAACCGGGTAT 2003 Query 1846 GCTCAGCAACCCCATGCTGCAGCGACTGCGCACGCTCAGCAACCCCATGCTGCAGCGACC 1905 |||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| Sbjct 2004 TCTCAGCAACCCCATGCTGCAGCTACCGCGCACGCTCAGCAACCCTATGCTGCAGCGACC 2063 Query 1906 GCGCACGCTCAGCAACCTC-ATTCTGCAGC 1934 |||||||||||||||| || || ||| ||| Sbjct 2064 GCGCACGCTCAGCAAC-TCCATGCTGTAGC 2092 Score = 331 bits (179), Expect = 2e-89 Identities = 357/442 (81%), Gaps = 15/442 (3%) Strand=Plus/Plus Query 1576 GGGTACGCTCAGCAACCCCATGCTGCAGCAACCGGGTACTCTCAGCAACCTCATGCTGCA 1635 |||||| |||||||||| |||| ||||||||||||||||||||||||||||||||| ||| Sbjct 1833 GGGTACTCTCAGCAACCTCATGATGCAGCAACCGGGTACTCTCAGCAACCTCATGCCGCA 1892 Query 1636 GCAACCGGGTACTCCCAGGTACCCTATGCTGCAGCAACCGGGTACTCCCAGGTACCCTAT 1695 ||||||||||||| ||| | ||||||||||||||||||||||| | ||| |||| || Sbjct 1893 TCAACCGGGTACTCTCAGCAAACCTATGCTGCAGCAACCGGGTACACTCAGCAACCCCAT 1952 Query 1696 GATGCAGCAACCGGGTACTCCCAGCAACCCTATGCTGCAGCAACCGGGTACTCTCAGCAA 1755 | || ||| |||||||| | ||||||||| |||| || ||||||||||| ||||||||| Sbjct 1953 GCGGCGGCAGCCGGGTACACTCAGCAACCCCATGCGGCGGCAACCGGGTATTCTCAGCAA 2012 Query 1756 CCCTATGCTGCAGCAACCGGGTACTCTCAGCAACCCCATGCTGCCA-C-AGCCGGGTATT 1813 ||| |||||||||| |||| | || ||||||||||| ||||||| | | | ||| | | Sbjct 2013 CCCCATGCTGCAGCTACCGCGCACGCTCAGCAACCCTATGCTGC-AGCGA-CCGCGCACG 2070 Query 1814 CTCAGCAACCCCATTCTGCAGCGACTGCGCACGCTCAGCAACCCCATGCTGCAGCGACTG 1873 ||||||||| |||| ||| ||| |||| | | |||| ||||| |||||||||||| || | Sbjct 2071 CTCAGCAACTCCATGCTGTAGCTACTGGGTATGCTCTGCAACTCCATGCTGCAGCTACCG 2130 Query 1874 CGCACGCTCAGCAACCCCATGCTGCAGCGACCGCGCACGCTCAGCAACCTCATTCTGCAG 1933 | |||||||||||||||||||||| || || | | | ||| |||||| ||| || || Sbjct 2131 GGTACGCTCAGCAACCCCATGCTGCCGCAACTGGGTATGCTTTGCAACCACATGCT-CA- 2188 Query 1934 CGACCGCGCACGCTCAATACACAACACAACCACATGCTCAAGCTGTTGAATACACAATGC 1993 | || | | ||||||||| |||||||||||||||||||||| |||| || Sbjct 2189 --A--GCT---GTTGAATACACAATGCAACCACATGCTCAAGCTGTTGGCTACATGCCGC 2241 Query 1994 AACCAC-ATGCTCAAGCTGTTG 2014 || || ||||||| ||||||| Sbjct 2242 AAT-ACCATGCTCACGCTGTTG 2262 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 127624702992 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5