BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496381 Length=1419 Score E Sequences producing significant alignments: (Bits) Value AT5G62070.1 | Symbols: IQD23 | IQ-domain 23 | chr5:24929919-249... 1977 0.0 > AT5G62070.1 | Symbols: IQD23 | IQ-domain 23 | chr5:24929919-24932576 REVERSE LENGTH=1475 Length=1475 Score = 1977 bits (1070), Expect = 0.0 Identities = 1317/1431 (92%), Gaps = 37/1431 (3%) Strand=Plus/Plus Query 23 TCTCAGCA-ATTAAATGAAGTGTAAATCCACCGGAGAAATCTCTGATAAAACTTCTCCGA 81 |||||| | ||||||| |||||| |||| ||||||||| |||| || ||||| || |||| Sbjct 47 TCTCAG-ATATTAAATAAAGTGTTAATCAACCGGAGAACTCTCCGACAAAACCTCGCCGA 105 Query 82 CGATTTTCCGACGATGAACGATGGGCTTTTTTGGGAGACTGTTCGGGAGT---AAAAAGT 138 |||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||| Sbjct 106 CGATTTTCCGACGATGAAAGATGGGCTTTTTCGGGAGACTGTTCGGGAGTAAAAAAAAGT 165 Query 139 CTGATAAATCAGCTCCGTCGAGAGATAAACGGAGGTGGAGCTTCACTACTAGATCTTCAA 198 |||||||| | ||| ||||||||||||||||||||||||||||||| || |||||||||| Sbjct 166 CTGATAAAGCTGCTTCGTCGAGAGATAAACGGAGGTGGAGCTTCACCACCAGATCTTCAA 225 Query 199 ATTCCAGCAAGAGAGCTCCGGCGGCGAAGAC-G-TT-TGTGGATGAGCAAAACGGTTTGG 255 |||||||||||||||||||||||| || | | | || |||| ||||||||| ||||||| Sbjct 226 ATTCCAGCAAGAGAGCTCCGGCGGTGACGTCGGCTTCGGTGGTTGAGCAAAATGGTTTGG 285 Query 256 ATGCCGACAAACATGCAATAGCCGTGGCTGCTGCGACCGCCGCGGTGGCTGAAGCAGCTC 315 |||| ||||||||||| ||||| |||||||||||||| ||||||||||| |||||||||| Sbjct 286 ATGCTGACAAACATGCGATAGCTGTGGCTGCTGCGACAGCCGCGGTGGCGGAAGCAGCTC 345 Query 316 TTACTGCTGCTCATGCGGCAGCTGAAGTCGTGAGACT--C-A-C---AA--GCGGGAGAA 366 ||||||||||||||||||||||||||||||||||||| | | | || ||||||||| Sbjct 346 TTACTGCTGCTCATGCGGCAGCTGAAGTCGTGAGACTAACAAGCGGAAACGGCGGGAGAA 405 Query 367 ATGGCGGTGGCGGTGGAAACTCGTCGGTGTTTCAAATCGGAAGAAGTAACCGTCGGTGGG 426 | | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 406 ACGTCGGTGGCGGTGGAAACTCGTCGGTGTTTCAAATAGGAAGAAGTAACCGTCGGTGGG 465 Query 427 CTCAGGAGAATCTCGCGGCCAGGAAGATTCAATCCGCTTTTCGTGGTTATCTGGCAAGGA 486 ||||||||||| ||||||| | ||||||||||||||||||||||||||||||||| |||| Sbjct 466 CTCAGGAGAATATCGCGGCGATGAAGATTCAATCCGCTTTTCGTGGTTATCTGGCGAGGA 525 Query 487 GAGCATTAAGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTTAGAGGACACATAG 546 |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 526 GAGCATTACGAGCACTAAAGGCATTAGTGAAGCTTCAAGCATTAGTGAGAGGACACATAG 585 Query 547 TGAGAAAACAAACTGCAGATATGCTTAGAAGGATGCAGACTCTGGTTCGTCTCCAATCTC 606 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 586 TGAGAAAACAAACTGCAGATATGCTTAGAAGGATGCAGACTCTTGTTCGTCTTCAATCTC 645 Query 607 AAGCTCGTGCTCGAGCCTCTCGTTCTTCTCACTCCTCTGCTTCTTTCCACTCCTCAACCG 666 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 646 AAGCTCGTGCTCGAGCCTCTCGTTCTTCTCACTCCTCTGCTTCTTTCCACTCCTCCACCG 705 Query 667 CTCTATTGTTCCCATCTTCCTCATCTTCTCCACGTTCTCTCCACACGCGCTGCGTTTCAA 726 |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 706 CTCTTTTGTTCCCATCTTCCTCGTCTTCTCCACGTTCTCTTCACACGCGCTGCGTTTCAA 765 Query 727 GCGCTGAAGTCATCTCTATGGACCACCGTGGAGGCTCTAAACGGTTAGATTGGCAAGCTG 786 ||||||||||| |||| | |||||||||||||||||||| |||||||||||||| || | Sbjct 766 ACGCTGAAGTCAGCTCTCTTGACCACCGTGGAGGCTCTAAGCGGTTAGATTGGCAGGCGG 825 Query 787 AGGAAGGCGAAGATGGAGACAAGATCCTAGAAGTGGATACTTGGAAGCCTCGTTATCATC 846 ||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 826 AGGAAAGCGAAAATGGAGACAAGATCCTAGAAGTGGATACTTGGAAGCCTCATTATCATC 885 Query 847 CGAAACCGCTACGTTCAGAGAGAAACAATGAGTCTCCAAGGAAAAGACAACAATCTCTT- 905 | |||||| |||||||||||||||||||||||||||| |||||| ||||||||||| || Sbjct 886 CCAAACCGTTACGTTCAGAGAGAAACAATGAGTCTCCGAGGAAACGACAACAATCT-TTG 944 Query 906 TTGGGTCCGAGAAGTACAGAGAACAGTCCTCAAGTTGGGTCTAGTGGGTCGAGAAGAAGA 965 ||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| Sbjct 945 TTGGGTCCGAGAAGTACAGAGAATAGTCCTCAAGTTGGTTCTAGTGGGTCAAGAAGAAGA 1004 Query 966 ACTCCTTTTACGCCAACGTCAAGAAGTGAGTATTCTTGGGGATGTAATAACTATTACTAC 1025 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1005 ACTCCTTTTACGCCGACGTCAAGAAGCGAGTATTCTTGGGGATGTAATAACTATTACTAC 1064 Query 1026 TCGGGTTACCACCCGAATTACATGGCTAACACTGAGTCTTATAAAGCTAAAGTCCGGTCA 1085 |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1065 TCGGGTTATCACCCGAATTACATGGCTAACACTGAGTCTTATAAAGCTAAAGTTCGGTCA 1124 Query 1086 CAGAGCGCGCCGAAACAGAGAGTTGAGGTCTCTAATGAGACCAGTGGCTACAAGAGATCT 1145 || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1125 CAAAGTGCGCCGAAACAGAGAGTTGAGGTCTCTAATGAGACCAGTGGCTACAAGAGATCT 1184 Query 1146 GTTCAGGGACAGTATTACTACTACACGGCGGTAGCAGAAGAGAGTTTGGATGTTGGAAGC 1205 |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 1185 GTTCAGGGACAGTATTACTACTACACAGCGGTAGAAGAAGAGAGTTTGGATGTTGGAAGC 1244 Query 1206 CCCGGTTACTATGGAGGAGGAGT------TTCTGATCGATTGAATCGGAACCAAAGTGCA 1259 | |||||||| |||||||||| |||||||||||||||||||||||||||||| Sbjct 1245 GCTGGTTACTACGGAGGAGGAGGAGGCGATTCTGATCGATTGAATCGGAACCAAAGTGCG 1304 Query 1260 AAATCGAGGATGCATTCTTCGTTTCTTGTTTAGATTATGATTCTCTTT-TCTT-TTT--- 1314 |||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| Sbjct 1305 AAATCGAGGATGCATTCTTCGTTTCTTGTTTAGATTGTGATTCTCTTTCTCTTCTTTTTT 1364 Query 1315 --G-TTTGAGTTTGGTAATTTTCCAGGAGAGACAAGT-TGTAAC--TGGATGTGTAAATT 1368 | |||||||||||||||||||||| ||||| |||| | |||| |||||||||||||| Sbjct 1365 TTGGTTTGAGTTTGGTAATTTTCCAGAAGAGATAAGTAT-TAACACTGGATGTGTAAATT 1423 Query 1369 GTTGTTAACAAGTTTCGATTGCTTGCAAAAGAAGGAACATAACTATGTTCT 1419 ||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 1424 GTTGTTAACAAGTTTCGATTGCTTGCAAAAGAAGGAACACCACTCTGTTCT 1474 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 69929359185 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5