BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496390
Length=756
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62140.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1181 0.0
> AT5G62140.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures;
EXPRESSED DURING: 13 growth stages; Has 60 Blast hits to
60 proteins in 24 species: Archae - 0; Bacteria - 14; Metazoa
- 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes
- 1 (source: NCBI BLink). | chr5:24954506-24955385 REVERSE
LENGTH=792
Length=792
Score = 1181 bits (639), Expect = 0.0
Identities = 726/766 (95%), Gaps = 13/766 (2%)
Strand=Plus/Plus
Query 1 GAGAAACATGGTTTCAACAAAAATAAACCCATT---AACAACAA--T-C---TACAAATC 51
||||||||||| |||||||||||||||| | || |||||||| | | ||||||||
Sbjct 3 GAGAAACATGGCTTCAACAAAAATAAACTCTTTAACAACAACAATCTACAATTACAAATC 62
Query 52 CCCAAAAAGATACATTAACCACAAATCCCAAAACCAAATCAAACTAATTTCAAATTCCCT 111
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 CCCAAGAAGATACATTAACCACAAATCCCAAAACCAAATCAAACTAATTTCAAATTCCCT 122
Query 112 AAACCCAAAACCCACCACAACACAGCTTCCCAATAATCTCTACAGTGTCAGCTTCAAGAC 171
|||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 123 AAACCCAAAACCCAACACAACACAGCTTCCCAACACTCTCTACAGTGTCAGCTTCAAGAC 182
Query 172 TATTGGATTAGGTAAGCTTGGCATCTCCAGATATCCCGATTTCGAATACTCTCCTCAAGG 231
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 183 TATTGGAACAGGTAAGCTTGGCATCTCCAGATATCCCGATTTCGAATACTCTCCTCTAGG 242
Query 232 TGGCTCCGGTGCCGGAACCGCCAAGAAAATCGACGACAAAAACAGAGCATCAAACTCTGA 291
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 243 TGGCTCTGGTGCCGGAACCGCCAAGAAAATCGACGACAAAAACAGAGCATCAAACTCTGA 302
Query 292 ATTGTCAGTTTGTTTCAATGTGGCCACTCTGTATATTCCTTCTCTCACTAGCCAAACCAC 351
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 303 ATTGTCTGTTTGTTTCAATGTGGCCACTCTTTATATTCCTTCTCTCACTAGCCAAACCAC 362
Query 352 GAAGTTTCTCGGCTTTCCATTGCCACCGTTTCTAAGAATCGATATCTCACCGGAGATTTT 411
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 363 GAAGTTTCTCGGCTTTCCATTGCCACCGTTTCTAAAAATCGATATCTCACCGGAGATTTT 422
Query 412 CCAGGGAACTATCGATCAAGAATCCGGGAAGGTGGAATTAGAGTTCACGGCGAAGTTCTT 471
||| ||||||||| | ||||||||||||||||||||||| ||||| | ||||||||||||
Sbjct 423 CCAAGGAACTATCAACCAAGAATCCGGGAAGGTGGAATTGGAGTTTATGGCGAAGTTCTT 482
Query 472 TTTCACGGCGGGAGGAGGGATATACAGAGCTCCGGCGTTGGTTGTTAAAACTCTGTTGAC 531
|||||||||||||||||||||||||||||||||||||||||| || | |||| |||||||
Sbjct 483 TTTCACGGCGGGAGGAGGGATATACAGAGCTCCGGCGTTGGTGGTGAGAACTGTGTTGAC 542
Query 532 GACGGAGGAATCGATAGGAGTG-ACAAAGAGAGGGAAAGGAGAGAGAATGGACGAAGAAG 590
|||||||||||||||||||| | || ||||||||||||||||||||| ||||||||||||
Sbjct 543 GACGGAGGAATCGATAGGAGAGAAC-AAGAGAGGGAAAGGAGAGAGACTGGACGAAGAAG 601
Query 591 GAAAGTGTAGACTCGTCGGCGTCGCGAAAGTTGAGA-CAGTCGACGATTTGTTTATGAAC 649
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 602 GAAAGTGTAGACTCGTCGGCGTCGCGAAAGTTGAGACCA-TCGACGATTTGTTTATGAAC 660
Query 650 ACGTTCCTCTCTCTTCCGGCGGAGTGTCTCGCCGATCTACAAGCTATTATTTCAGTCTCT 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ACGTTCCTCTCTCTTCCGGCGGAGTGTCTCGCCGATCTACAAGCTATTATTTCAGTCTCT 720
Query 710 GATAATCAATCTTGAATCTTAATGATAAAGCATAAATATTTGAGTT 755
||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 GATAATCAATCTTGAATCTTAATGATAAACCATAAATATTTGAGTT 766
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36721161457
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5