BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496396 Length=2358 Score E Sequences producing significant alignments: (Bits) Value AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | ... 3496 0.0 > AT5G62190.1 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | chr5:24980268-24983973 REVERSE LENGTH=2384 Length=2384 Score = 3496 bits (1893), Expect = 0.0 Identities = 2221/2375 (94%), Gaps = 39/2375 (2%) Strand=Plus/Plus Query 1 TTTGTCGTCTCTCCCTGCTTTCGCACTTTCAATAGCCTCAATCTCTCAAAAAGCAGAAGA 60 |||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| Sbjct 8 TTTGTCGTCTCTCCCTGCTTTCGCAC-TTC-ATAGCCTCAATCTCTCAACAAGCAGAAGA 65 Query 61 GATTCGATTCTCCATTATCTTCCTTCTAAATGCCTTCACTAATGTTATCTGATaagaaag 120 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 66 GATTCGATTCTCCATTATCTTCCTTCTAAATGCCTTCCCTAATGTTATCTGATAAGAAAG 125 Query 121 aggagaagaagatgaagaagaagaTAGCTTTGGATACCCCAGAGCTTGATTCTAAGAAGG 180 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 126 AGGAGAAGAAGATGAAGAAGAAGATGGCTTTGGATACCCCAGAGCTTGATTCTAAGAAGG 185 Query 181 GGAAGAAGGAGCCGAAGCTGAAACTATCTGATTCTGATgaagaagagtcggagaagaaga 240 |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 186 GGAAGAAGGAGCAGAAGCTGAAACTATCTGATTCGGATGAAGAAGAGTCGGAGAAGAAGA 245 Query 241 agagtaagaagaaggataagaagcgtaaggcttccgaggaggaggatgaagtgaagaGCG 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 246 AGAGTAAGAAGAAGGATAAGAAGCGTAAGGCTTCCGAGGAGGAGGATGAAGTGAAGAGCG 305 Query 301 ATTCGAGCTCGGAGAAGAAGAAGAGCAGCAAGAAGGTTAAGTTGGGTGTTGAAGATGTTG 360 |||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 306 ATTCAAGCTCGGAGAAGAAGAAGAGCAGCAAGAAGGTTAAGTTGGGCGTTGAGGATGTTG 365 Query 361 AAGTTGATAACCCTAATGCTATTTCCAATTTTCGGATTTCTGCTCCGTTGAGGGAGAAGC 420 |||||||||||||||||||| |||| || |||||||||||||| || ||||||||||||| Sbjct 366 AAGTTGATAACCCTAATGCTGTTTCTAAGTTTCGGATTTCTGCGCCTTTGAGGGAGAAGC 425 Query 421 TTAAGGCGAAGGGTATTGAAGCTCTTTTCCCGATTCAAGCTACAACTTTTGATATGGTTC 480 |||||||||| |||||||||||||||||||||||||| ||| | || ||||||||||||| Sbjct 426 TTAAGGCGAATGGTATTGAAGCTCTTTTCCCGATTCAGGCTTCCACGTTTGATATGGTTC 485 Query 481 TCGATGGTGCTGATTTAGTTGGACGTGCTCGTACTGGTCAGGGTAAAACATTGGCTTTTG 540 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 486 TCGATGGTGCTGATTTAGTTGGACGGGCTCGTACTGGTCAGGGTAAAACATTGGCTTTTG 545 Query 541 TGTTGCCTATATTGGAATCGTTGGTTAATGGACCTGCCAAAAACAAAAGGAAGATGGGAT 600 ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 546 TGTTGCCTATATTGGAATCTTTGGTTAATGGACCTGCCAAAAGCAAAAGGAAGATGGGAT 605 Query 601 ATGCCAGGGCACCAAGTGTATTGGTCCTTTTACCGACCAGAGAATTGGCCAAGCAGGTGG 660 ||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 606 ATGGCAGGTCACCAAGTGTTTTGGTCCTTTTACCGACCAGAGAATTGGCCAAGCAGGTGG 665 Query 661 CTGCTGACTTTGATGCATATGGAGGATCACTTGGGTTAAGTTCATGTTGTATCTATGGAG 720 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 666 CTGCTGACTTTGATGCATATGGAGGATCACTTGGGTTAAGTTCATGTTGTCTCTATGGAG 725 Query 721 GTGATAGCTATACAGCTCAGGAGAATAAATTAAGGAGAGGTGTTGACATTGTAGTTGGAA 780 ||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||| Sbjct 726 GTGATAGCTATCCAGTTCAGGAGGGTAAATTAAAGAGAGGTGTTGACATTGTAGTTGGAA 785 Query 781 CCCCTGGTCGTATTAAGGATCATATTGAGAGACAAAACATTGATCTCAGCCATCTGCAAT 840 |||||||||||||||||||||||||||| ||||||||| ||||| ||||| || | |||| Sbjct 786 CCCCTGGTCGTATTAAGGATCATATTGAAAGACAAAACCTTGATTTCAGCTATTTACAAT 845 Query 841 TCCGTGTTCTTGATGAAGCTGATGAAATGTTGAGGATGGGATTTGTTGAGGATGTTGAAC 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 846 TCCGTGTTCTTGATGAAGCTGATGAAATGTTGAGGATGGGATTTGTTGAGGATGTTGAAC 905 Query 901 TTATATTAGGGAAAGTGGAGGATCCTACTAAAGTCCAGACTCTTCTCTTCAGTGCTACTT 960 |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 906 TTATTTTAGGGAAAGTGGAGGATTCTACTAAAGTCCAGACTCTTCTCTTCAGTGCTACTT 965 Query 961 TGCCATCATGGGTGAAAAATATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTG 1020 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 966 TGCCATCATGGGTGAAAAATATCTCTAACAGGTTTCTTAAAAGAGACCAGAAGACTATTG 1025 Query 1021 ATCTTGTTGGTAATGATAAAATGAAGGCCAGTAATAGTGTTCGACACATCGCTATACCCT 1080 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | Sbjct 1026 ATCTTGTTGGTAATGATAAAATGAAGGCCAGTAATAGTGTTCGACACATTGCTATTCCTT 1085 Query 1081 GTAATAAGGCGGCCATGGCTCGGTTGATTCCTGATATTATCAGTTGCTATAGCAGTGGAG 1140 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1086 GTAATAAGGCAGCCATGGCTCGGTTGATTCCTGATATTATCAGTTGCTATAGCAGTGGAG 1145 Query 1141 GCCAAACCATTATTTTCGCTGAGAA-GAAAAATGAAGTTTCCGAGCTTTCTGGTTTGTTG 1199 ||||||| |||||||||||||| || ||| | ||||||| |||||||||||||||||| Sbjct 1146 GCCAAACTATTATTTTCGCTGA-AACTAAAGTTCAAGTTTCTGAGCTTTCTGGTTTGTTG 1204 Query 1200 GCTGGGTCAAGAGCCTTGCATGGTGAAATACCTCAAGCTCAACGTGAGGTTACTCTTGCT 1259 | ||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 1205 GATGGATCAAGAGCCTTGCATGGTGAAATACCTCAATCACAACGTGAGGTTACTCTTGCT 1264 Query 1260 GGATTTAGGAATGGCAAGTTTTCGACATTGGTGGCTACAAATGTTGCTGCTCGTGGTCTA 1319 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| Sbjct 1265 GGATTTAGGAATGGCAAGTTTGCAACATTGGTGGCTACAAATGTTGCTGCTCGTGGTCTA 1324 Query 1320 GATATCAATGATGTGCAGTTAATTATCCAGTGTGAGCCTCCACGTGAAGTTGAAGCATAT 1379 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1325 GATATCAATGATGTGCAGTTAATTATCCAGTGTGAGCCTCCACGTGAAGTTGAAGCATAT 1384 Query 1380 ATTCATCGTTCAGGCCGAACAGGAAGAGCTGGCAACACTGGAGTTGCAGTTACGCTCTAC 1439 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct 1385 ATTCATCGTTCAGGCCGAACAGGAAGAGCTGGCAACACAGGAGTTGCGGTTACACTCTAC 1444 Query 1440 GAGTCTAGAAAGTCGAGTGTATCAAGGATCGAAAAGGAAGCTGGTATAAAATTTGAGTAC 1499 || |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||| || Sbjct 1445 GATTCTAGAAAGTCGAGTGTATCCAGGATCGAAAAAGAAGCTGGTATCAAATTTGAGCAC 1504 Query 1500 ATTTCTGCACCTCAGCCTGATGATATTGCCAGAGCTGTTGGTATGGAAGCTGCTGAGAAT 1559 || |||||||||| |||||||| ||||||||| ||| ||||||||||||||||||||| Sbjct 1505 CTTGCTGCACCTCAACCTGATGAAATTGCCAGATCTGGTGGTATGGAAGCTGCTGAGAA- 1563 Query 1560 A-TTAAAAAAGTCTGTGACAGTGTGGTTCCTGCATTCCTGGGAGCTGCCAAGGAATTATT 1618 | ||||| |||| |||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 1564 AGTTAAACAAGTGTGTGACAGTGTGGTTCCTGCATTCCTTGAAGCTGCCAAGGAATTATT 1623 Query 1619 AGAATCTTCTGGTTTATCAGCTGAAGTACTCCTCGCAAAAGCTCTTGCAAAAACAGCGGG 1678 |||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1624 AGAAACTTCTGGTTTATCAGCTGAAGTACTCCTCGCAAAAGCTCTTGCAAAAACTGCGGG 1683 Query 1679 CTTCACTGAGATAAAGAAAAGGTCACTTCTTACATCAATGGAGAACCATGTGACACTACA 1738 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1684 CTTCACTGAGATAAAGAAAAGGTCACTTCTTACATCAATGGAGAACTATGTGACACTACA 1743 Query 1739 TCTTGAAGCAGGGAAACCAATGTACTCGCCATCATATGTTTATGGATTGCTAAGGAGAGT 1798 ||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| Sbjct 1744 TCTTGAAGCAGGGAAACCAATATACTCGCCATCATTTGTTTATGGACTGCTAAGGAGAGT 1803 Query 1799 TTTACCAGATGACAAGGTGGAACA-GATTGAAGGGTTATCTCTAACAGCAGATAAAAGC- 1856 |||||| ||||||||||||||| | |||||||||||||||||||||||||||||||| | Sbjct 1804 TTTACCGGATGACAAGGTGGAA-ATGATTGAAGGGTTATCTCTAACAGCAGATAAAA-CA 1861 Query 1857 GGAGCAGTGTTTGATGTTAAGCAATCGGATCTAGCCTTGTTCCTTGCAGCTGGACAAAAG 1916 ||||| ||||| |||||||||||||| ||||||| ||||||| |||||| | ||||||| Sbjct 1862 GGAGCTGTGTTCGATGTTAAGCAATCAGATCTAGACTTGTTCATTGCAGGAGCACAAAAG 1921 Query 1917 AGTGCTGGAAGTATGAGCTTGGAAGTGGTTAAGGAGATGCCTAAACTTCAGGAGAGAGAA 1976 ||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||| Sbjct 1922 AGTGCTGGAAGTATGAGTTTGGAAGTGGTTAAGGTGATGCCTAAACTCCAGGAGAGAGAA 1981 Query 1977 CCATTGCCACAAAAAAGATACGGTCGCAATG-Ctggtggaaaccggtttggaggtggtgg 2035 ||||||||||||||||||| |||| | || | | ||||| |||||||| |||||| Sbjct 1982 CCATTGCCACAAAAAAGATTCGGTGGTGGTGGCAGA-GGAAATCGGTTTGG---TGGTGG 2037 Query 2036 tggtggaaatcggtttgg---tggtggtggcagaggaagagg------tggtggtAGAGG 2086 ||| |||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2038 TGGAGGAAATCGGTTTGGCGGTGGTGGTGGCAGAGGAAGAGGAGGCAGTGGTGGTAGAGG 2097 Query 2087 CCAGAGATATTGAAAACTCGAACCCAACTTCTCTCTCCTTTTGATaaaaaaaGATACTAA 2146 |||||||||||||||||| |||||||||||||| || || | ||| ||||||| ||||| Sbjct 2098 CCAGAGATATTGAAAACTGGAACCCAACTTCTC-CT--TTCT-ATATAAAAAGAAACTAA 2153 Query 2147 ACTCCCTCTTATAATTTCATTACTATCTTCTTGCGCTGATGATTTCTACACTATAATAGG 2206 ||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 2154 ACTCCGTCTTATAATTTCATTACTATCTTCTTCCGCTGATGTTTTCTACACTATAATAGG 2213 Query 2207 TG--TTTTCTGTGTGTTTTCCGttttttttttCTTTCTTTGAACAAACTTAAGGAGGCTC 2264 || |||||||||| ||| || |||| ||| | ||| ||||||||||| |||||||| Sbjct 2214 TGGCTTTTCTGTGT-TTT-CCATTTTCTTT--C---CTT-GAACAAACTTATGGAGGCTC 2265 Query 2265 TCTTGTGTCCTCTTATCAATTTTGTGTAAT-TTGGATGATAATGATGATTAAATTATTAC 2323 |||||| |||||||||||||||||||||| |||||||||||||||||||||||||| || Sbjct 2266 TCTTGTACCCTCTTATCAATTTTGTGTAATGTTGGATGATAATGATGATTAAATTATAAC 2325 Query 2324 TTCGTCACTAATGGGAATTGTTTTGTAGGTTTCAA 2358 ||||||||| || |||||||||||||| ||||||| Sbjct 2326 TTCGTCACTCATTGGAATTGTTTTGTAAGTTTCAA 2360 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 117067670940 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5