BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496400 Length=1343 Score E Sequences producing significant alignments: (Bits) Value AT5G62240.1 | Symbols: | Cell cycle regulated microtubule asso... 1801 0.0 > AT5G62240.1 | Symbols: | Cell cycle regulated microtubule associated protein | chr5:25002358-25004766 REVERSE LENGTH=1514 Length=1514 Score = 1801 bits (975), Expect = 0.0 Identities = 1181/1278 (92%), Gaps = 24/1278 (2%) Strand=Plus/Plus Query 74 TCGAGGATCGATTATGGTTCCGGAATCATCATC----ATCAATAAGTTTTTCTGGAGATG 129 |||||||| ||| |||||||| ||||||||||| || ||| ||||||||||| |||| Sbjct 185 TCGAGGATTGATAATGGTTCCCGAATCATCATCGAGGAT-AATGAGTTTTTCTGGCGATG 243 Query 130 ATTTCGAATTCGATATTGATTTCGAATTCGATGCACCGAGGTTTTATGATTTCTCTAGAC 189 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 244 ATTTCGAATTCGATATTGATTTCGAATTCGATGCACCGAGGTTCTATGATTTCTCTAGAC 303 Query 190 CAGAGCTTGATTCCGAGACTGAAGAAATCGAAACCTGGTTTCAATCCTCTGGAAACTATC 249 | |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 304 CTGAGCTTTATTCCGAGACTGAAGAAATCGAAATCTGGTTTCAATCCTCTGGAAACTATC 363 Query 250 CTCCTTCACCTTTTAGCCCAAAATTCAATTGGAAATTTGAGCCGTTTAAGCAAATTACAA 309 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 364 CTCCTTCACCTTTTAGCCCAAAGTTCAATTGGAAATTTGAGCCATTTAAGCAAATTACAA 423 Query 310 ATACCATATCAGACTCTAAGCCTGTGGAGATCATCGAATCCTCCTTGGATA-CCGATACC 368 | ||||||||||| ||||||||||||||||| || ||||||| | ||| | |||| ||| Sbjct 424 ACACCATATCAGAGTCTAAGCCTGTGGAGATTATTGAATCCT-C--GGA-AGCCGAGACC 479 Query 369 GGTCTGAATCGCAAAGATAAATTCAACGGGTTCATATATTACAACCAAACCGTTAAAGAT 428 ||| ||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 480 GGTTTGAATTGCAAAGATAAATTCAACGGCTTCATATATTATAACCAAACCGTTAAAGAT 539 Query 429 GTGTCCAATACAAAATCGAAATCTAAAACCAAACCAAGTAACTCTACTTTGACAAGACCT 488 || ||||| | |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 540 GTATCCAAGAAAAAATCGAAATCTAAAACCAAAACAAGTAACTCTACTTTGACAAGACCT 599 Query 489 ACGGCTTCTTTGCTTGCAAGGCAGAACAAACCGTTAGACATTTACTCTGTTCAACTTCTG 548 |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 600 ACGGCTTCTTTGCTTGCAAGGCAGAACAAACCTTTAGATATTTACTCTGTTCAACTTCTG 659 Query 549 ACAAGATGTCAGAGGTCTTTAGCCAAGTTTGGTGAAAACGTATCACCGATCTTAGTCTCT 608 |||||||||||| | || |||||||||||||||||||| ||| | ||| ||||||||||| Sbjct 660 ACAAGATGTCAGCGATCATTAGCCAAGTTTGGTGAAAATGTAGCTCCGGTCTTAGTCTCT 719 Query 609 AAATTACAAAACCAAGACACCAATAGGCAAAAA-ATGGAAGCTAAGGTGGCTCCTGTTAG 667 || |||||||||||||||||||||||||||||| | ||||||||||||||||| |||||| Sbjct 720 AAGTTACAAAACCAAGACACCAATAGGCAAAAACA-GGAAGCTAAGGTGGCTCATGTTAG 778 Query 668 CAGAAGAACCAAACTCACTGTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGA 727 ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 CAGCAGAGCCAAACTCACTGTTCCAAAGGAACCGAATCTTAGAACTGCAGAAAGATCTGA 838 Query 728 AAGGCACAGGTCTAAGGTTAACTCAGAGACCGAGCAGATTGCGACATCAAGTTCTAAAAG 787 ||| |||||||||||||||||| || ||| ||||||||||||||||||| ||||||||| Sbjct 839 AAGACACAGGTCTAAGGTTAACACACAGAGAGAGCAGATTGCGACATCAAATTCTAAAAG 898 Query 788 ACACATTAGGAACAAAAATATTAATCTGGAACCT-TCTTCAACATCTCTGCCCAAAAGTA 846 |||||||||||||||||||||||||||||||||| | |||||||||| || | |||| || Sbjct 899 ACACATTAGGAACAAAAATATTAATCTGGAACCTGT-TTCAACATCTTTGGCTAAAACTA 957 Query 847 ATACACCACGGTCCCAACAGTTTCAGGCATTTCGTTTAAGAACATCACTGAGAGCAAAGG 906 |||| |||||||||||||| |||||||||||||||||||| |||||||||||||| |||| Sbjct 958 ATACGCCACGGTCCCAACATTTTCAGGCATTTCGTTTAAGGACATCACTGAGAGCGAAGG 1017 Query 907 AACGCTCTTCAAATGCTAAAATCGATGTCATACAAGAAAATGATGCTACTAACTCCAGAA 966 ||||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||||||| Sbjct 1018 AACGCTCTTCAAATGCTAAAACCGATGTCGTACAAGAGAATGATGCTACTAAGTCCAGAA 1077 Query 967 CACTAAAACGTTCTCAGCCCATTGATTCCTCAAAAACTAGGATAGTCAAAGAAAATCACA 1026 |||||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1078 CACTAAAAA------AGCCCATTGATTCCTTAAAAACTAGGATAGTCAAAGAAAATCACA 1131 Query 1027 GCAGAAAGATAAATTGCCAAGTGTATGAATCTAAAACTTCCCCTCTAGACCCAAAGGTAT 1086 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 1132 GCAGAAAGATAAATTGCCAAGTGTATGAATCTAAATCTTCCCCTCTAGACCCAAAGATAT 1191 Query 1087 CAAGCAAAGGAAAAC-TCGGTGGAGCAATCCGCATCGAATATGGAAATCAGAGCTCATGC 1145 ||||||||| || || ||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1192 CAAGCAAAG-AAGACCTCGTTGAAGCAATCCGCATCGAATATGGAAATCAGAGCTCATGC 1250 Query 1146 AGGACAGATATTAGCAGGAGCCTGGATTTATGCCGGAAGTTCGACTCACAGGAAGTTGCA 1205 ||||||||||||| ||||||||||||||| |||||||| ||||| || |||||||||||| Sbjct 1251 AGGACAGATATTAACAGGAGCCTGGATTTGTGCCGGAAATTCGATTCTCAGGAAGTTGCA 1310 Query 1206 AGGAACCTAATCACTGCTTAATCTTCACCTTGAAGATGTTCTTTCATGTTTTATACATGT 1265 ||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 1311 AGGAACCTAATCACTGCTTAATCTTCATTTTGAAGATGTTCTTTCATTTTTTATACATGT 1370 Query 1266 AACACACGCATTCCTATGTCTATATATAAGTAAACATGTATACTTGTTTAGATATATGGA 1325 |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| | Sbjct 1371 AACACACGCATTCCTATGTCTATATA-A-GTAAACGTGTATACTTGTTTAGATATATGCA 1428 Query 1326 TAGAGAATGAGATTTTTT 1343 ||||||| |||||||||| Sbjct 1429 TAGAGAAAGAGATTTTTT 1446 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66114117765 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5