BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496425
Length=797
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62480.1 | Symbols: ATGSTU9, GST14, GST14B, GSTU9 | glutathi... 1147 0.0
> AT5G62480.1 | Symbols: ATGSTU9, GST14, GST14B, GSTU9 | glutathione
S-transferase tau 9 | chr5:25088694-25089620 REVERSE LENGTH=858
Length=858
Score = 1147 bits (621), Expect = 0.0
Identities = 732/784 (93%), Gaps = 13/784 (2%)
Strand=Plus/Plus
Query 18 AAAAAATGGATGAAGAAATTGAGAACAAAGTGATACTCCATGGATCATTCGCGAGTCCTT 77
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 AAAAAATGGATGAAGAAGTTGAGAACAAAGTGATACTCCATGGATCATTCGCGAGTCCTT 109
Query 78 ACAGCAAAAGGATTGAGTTAGCACTCAA-GCTTAAATCCATACCTTACCAATTCGTGCAA 136
|||||||||||||||||||||| || || |||||||||||||||||||||||||||||||
Sbjct 110 ACAGCAAAAGGATTGAGTTAGCCCT-AAGGCTTAAATCCATACCTTACCAATTCGTGCAA 168
Query 137 GAAGATCTCCAGAACAAGAGCCAAACCCTTCTCCGGTACAATCCGGTTCACAAGAAGATC 196
||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||
Sbjct 169 GAAGATCTCCAGAACAAGAGCCAAACCCTGCTCCGGTATAACCCGGTTCACAAGAAGATC 228
Query 197 CCGGTTCTCGTCCACAACGGTAAACCCATCTCTGAATCCTTATTTATCATTGATTACATC 256
|||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct 229 CCGGTTCTTGTCCACAACGGTAAACCCATCTCTGAGTCCTTGTTTATCATTGAATACATC 288
Query 257 GACGAAACGTGGAG-AAGCGGACCACATCTTTTGCCAGAAGACCCTTATAGAAGATCTAA 315
|||||||||||||| || ||| |||||| |||||||||||||||||||||||||||||||
Sbjct 289 GACGAAACGTGGAGTAA-CGGTCCACATATTTTGCCAGAAGACCCTTATAGAAGATCTAA 347
Query 316 AGTCCGGTTTTGGGCTAACTACATCCAATTACACCTTTACGATGTGGTGATAAAAGTGGT 375
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 348 AGTCCGGTTTTGGGCTAACTACATCCAATTACATCTTTACGATTTGGTGATAAAAGTGGT 407
Query 376 GAAAAGCCaaggagaagagcaagagagagctctcacagaggtgaaggagaagctgagagt 435
||||||| |||||||||||||| ||| |||||||||||| || |||||||||||||| ||
Sbjct 408 GAAAAGCGAAGGAGAAGAGCAAAAGAAAGCTCTCACAGAAGTAAAGGAGAAGCTGAGCGT 467
Query 436 gatagagaaagaagGGCTTAAGGAGATTTTCTCTGACACTGATGGTGAACCGACCGTGAC 495
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 468 TATAGAGAAAGAAGGGCTTAAGGAGATTTTCTCTGACACTGATGGTGAACCAACTGTGAC 527
Query 496 AAACGAGACCATGAGCCTCGTAGACATTGTGATGTGCACTTTGCTTAGTCCTTACAAGGC 555
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 528 GAACGAGACCATGAGCCTCGTAGACATTGTGATGTGCACTTTGCTTAGCCCTTACAAGGC 587
Query 556 ACACGAAGAAGTATTGGGTCTGAAGATTATAGACCCAGAGATTGTTCCTGGTGTCTACGG 615
|||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||||||
Sbjct 588 ACACGAAGAAGTTTTGGGTCTGAAAATTATTGACCCAGAGATAGTTCCTGGTGTCTACGG 647
Query 616 TTGGCTCAATGCTATTAACGAAACCAGTGTGGTCAAAGAGCTAAGTCTTCCTTATGAACA 675
||| |||||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||
Sbjct 648 GTGGATCAATGCTATAAACGAAACCAGCGTGGTCAAAGATCTAAGTCCTCCTTATGAACA 707
Query 676 AGTCCTAGAGATTCTTAGGGTTTTCAGACAGATGTCTCTCTC-CC-GTTCCTGAAACTTA 733
| |||||||||||||| ||| ||||||||||||||||||||| || |||| |||||||||
Sbjct 708 AATCCTAGAGATTCTTCGGGCTTTCAGACAGATGTCTCTCTCTCCCGTTCTTGAAACTTA 767
Query 734 TCAGTC-T---T---AAGTTTTGGATTGCTTGATGCAAAGTTATAAAATTATGTTCTCTG 786
|||||| | | ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 768 TCAGTCATAACTCTTAAGTTTTGGATTGCTTGATGCAAAGTTATAAAATTATGTGCTCTG 827
Query 787 TTTT 790
||||
Sbjct 828 TTTT 831
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38780761484
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5