BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496441 Length=1198 Score E Sequences producing significant alignments: (Bits) Value AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1932 0.0 > AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr5:25132899-25134788 REVERSE LENGTH=1252 Length=1252 Score = 1932 bits (1046), Expect = 0.0 Identities = 1156/1207 (96%), Gaps = 16/1207 (1%) Strand=Plus/Plus Query 1 ATTATCACTTGCCTCATATCTCTTACCTTCTCCGATCTCTCTCTCTGTTTGTCCACCTCA 60 ||||||||| || ||| | |||||||||||||||||||||||||| ||||||||||||| Sbjct 1 ATTATCACTACCCACATCTGTCTTACCTTCTCCGATCTCTCTCTCTATTTGTCCACCTCA 60 Query 61 TACACAACCCTATAAACACGACAAGACCTCGCAAAGCTCAAACCTTTTCCTTC--TTTTT 118 ||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| Sbjct 61 CACACAACCCTATAAACAAGACAAGACCTCGCAAAGCTCAAACCTTTTCCTTCTTTTTTT 120 Query 119 CTATCAAGTTCCTCACTTCTCGGATCCGGGTCCTAAATCTGGGTCAACCC-TTTTACGAT 177 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 121 CTATCAAGTTCCTCACTTCTCGGATCCGGGTCCTAAATCTGGGTCAACCCTTTTTACGAT 180 Query 178 CATCGGAAATGGACCCTCCACTTGTGAACGATTCCTCCTTCTCCGCAGCTAATCCTTCTT 237 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 181 CATCGGAAATGGACCCTCCACTAGTGAACGATTCCTCCTTCTCTGCAGCTAATCCTTCTT 240 Query 238 CTTACACTCTCTCCGAGATTTGGCCTTTCCCTGTAAACGACGCCGTTCGCTCTGGTCTCC 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 CTTACACTCTCTCCGAGATTTGGCCTTTCCCTGTAAACGACGCCGTTCGCTCTGGTCTCC 300 Query 298 GTTTAGCCGTTAACTCCGGTCGAGTCTTCACTCGGTCTGAACATTCCGGCAATAAAGACG 357 ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 301 GTTTAGCTGTTAACTCCGGTCGAGTCTTTACTCGCTCTGAACATTCCGGCAATAAAGACG 360 Query 358 TCTCGGCGGCAGAGGAATCTACTGTCACCGATCTAACTGCTGGCTGGGGAGGTAGAAAGA 417 |||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||||||||| Sbjct 361 TCTCCGCGGCTGAGGAATCTACAGTCACCGATCTAACTGCTGGCTGGGGAAGTAGAAAGA 420 Query 418 CTAGAGATTTGAACTCTGAGGACGATTCTTCAAAGATGGTTTCTTCCAGCAGCAGTGGTA 477 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 421 CTAGAGATTTGAACTCTGAGGATGATTCTTCAAAGATGGTTTCTTCCAGCAGCAGTGGTA 480 Query 478 ATGAATTGAAAGAATCAGGCGATAAGAAAAGAAAACTTTGTGGATCTGAAAGTGGAAATG 537 ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| Sbjct 481 ATGAATTGAAAGAATCAGGGGATAAGAAAAGAAAACTGTGTGGATCTGAAAGTGGAAATG 540 Query 538 GAGATGGTTCGATGAGACCTGAAGGCGAAACAAGTTCGGGTGGTGGTGGTGGAAGCAAAG 597 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 541 GAGATGGTTCGATGAGACCTGAAGGCGAAACAAGTTCGGGTGGTGGTGG---AAGCAAAG 597 Query 598 CAACGGAACAGAAGAACAAACCAGAGCCACCGAAGGATTATATCCATGTGAGAGCAAGAA 657 |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| Sbjct 598 CAACGGAACAGAAGAACAAACCTGAGCCACCAAAGGATTATATTCATGTGAGAGCAAGAA 657 Query 658 GAGGACAAGCTACTGACCGGCATAGTCTAGCAGAGCGAGCTAGAAGAGAAAAGATCAGTG 717 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 658 GAGGACAAGCTACTGACCGGCATAGTTTAGCAGAGCGAGCTAGAAGAGAAAAGATCAGTG 717 Query 718 AGAAGATGACAGCTCTTCAAGATATAATTCCGGGATGTAATAAGATAATCGGAAAAGCCC 777 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 718 AGAAGATGACAGCTCTTCAAGATATAATTCCAGGATGTAATAAGATAATCGGAAAAGCCC 777 Query 778 TTGTGCTCGATGAGATTATCAATTATATTCAGTCGTTGCAGCGGCAAGTTGAGTTTCTGT 837 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 778 TTGTGCTCGATGAGATTATCAATTATATTCAGTCATTGCAGCGGCAAGTTGAGTTTCTAT 837 Query 838 CAATGAAGCTAGAAGTTGTTAACTCAGGTGCAAGTACTGGTCCAACAATAGGAGTTTTTC 897 ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| Sbjct 838 CAATGAAGCTAGAAGTTGTTAACTCGGGTGCAAGTACTGGTCCGACAATAGGAGTTTTTC 897 Query 898 CTTCTGGTGATCTCGGGACTTTACCGATTGACGTTCATCGAACAATATATGAGCAACAAG 957 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 898 CTTCCGGTGATCTCGGGACTTTACCGATTGACGTTCATCGAACAATATACGAGCAACAAG 957 Query 958 AAGCTAACGAAACCCGAGTATCTCAACCGGAGTGGCTCCATATGCAGGTTGATGGGAACT 1017 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 958 AAGCTAATGAAACCCGAGTATCTCAACCGGAGTGGCTCCATATGCAGGTTGATGGGAACT 1017 Query 1018 TTAACCGAACCACATaaaaaaaaaGTCTTTCTTTGATTGATGGATGTGTTTTGTAGGCAG 1077 ||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||| Sbjct 1018 TTAACCGAACCACATAAAAAAGA-GTCTTTCTCTGATTGATGGATGTGTTTTGTAGGCAG 1076 Query 1078 TAAAAATGAATGCAACCCTTTAttttttttC-T--G--TGTGTATCATTTTGCTGTTATA 1132 |||||||||||||||||||||||||||| || | | |||||||||||||||||||||| Sbjct 1077 TAAAAATGAATGCAACCCTTTATTTTTTATCCTATGCGTGTGTATCATTTTGCTGTTATA 1136 Query 1133 TCATCATAAGATAGA-TATGAGAGTGACCAGAGAGATTAACACTTTATAAAACATTGTTG 1191 |||| | | |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 TCAT-A-A-GATAGAATATGAGAGTGACCAGAGAGATTAACACTTTATAAAACATTGTTG 1193 Query 1192 TATTGTC 1198 ||||||| Sbjct 1194 TATTGTC 1200 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58835038740 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5