BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496445
Length=2270
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62630.1 | Symbols: HIPL2 | hipl2 protein precursor | chr5:2... 3400 0.0
> AT5G62630.1 | Symbols: HIPL2 | hipl2 protein precursor | chr5:25143595-25146459
REVERSE LENGTH=2284
Length=2284
Score = 3400 bits (1841), Expect = 0.0
Identities = 2128/2263 (94%), Gaps = 34/2263 (2%)
Strand=Plus/Plus
Query 34 agagagagagagagGATTGTGTTGTGGCATAGTTCCAATAATGGCAAAGACGATTCAAGC 93
|||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 30 AGAGAGAGAGAGAGAATTGTGTTGTTGCATAGTTCCAATAATGGCAAAGACGAATCAAG- 88
Query 94 CATCATCACTATCTGTTCCCTTCTTCTGCTTCTTCTACTCTCTGCAACAACTTCTCATCC 153
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 89 C--CATCACTATCTGTTCCCTTCTTCTGCTTCTTCTACTCTCTGAAACAACTTCTCA-CC 145
Query 154 -TCTTTGCTCAGATTCAAAGACTCCAGTTAACAACAACGAGACACTCCAGTTCTGCGATT 212
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 146 TTCTTTGCTCAGATTCAAAGACTCCAGTCAACAACAACGAGACACTCCAGTTCTGCGATT 205
Query 213 CCTACAAAGGAAA-AACTTGCTGCAATTCCAAAGATGATCTTCAATTACAGAATCGCTTC 271
|||||||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 206 CCTACAAA-GAAAGATCTTGCTGCAATTCTAAAGATGATCTTCAATTACAGAATCGCTTC 264
Query 272 AACTCCATGAACATCTCTGACTCCAATTGTTCTTCCCTTCTCAAATCCATTCTTTGCTCT 331
||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct 265 AACTCCATGAACATCTCTGACTCTAATTGTTCTTCTCTTCTCAAATCCATTCTCTGTTCT 324
Query 332 AAATGTGATCAATCCTCAGGACAATTG-TT--TGATGATGATAGTTCTCTAGTTCCAATT 388
||||||||| ||| ||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 325 AAATGTGATGAATTCTCAGGACAATTGTTTGGTGATGATGATAGTTCTCTAGTTCCAATT 384
Query 389 CTTTGCAACTCAACTTCACAAGACTTATGCTCAAAGCTTTGGGATTCATGTCAGAACATT 448
|| ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 385 CTCTGCAACTCAACATCACAAGACTTATGTTCAAAACTTTGGGATTCATGTCAGAACATT 444
Query 449 TCCATTGTTTCTTCTCCTTTTAGTCCCACTCTACTAGGTGGTGCTACTTCCCCTTCAACT 508
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 445 TCCATTGTTTCTTCTCCTTTTAGTCCCACTCTACTTGGTGGTGCTACTTCGCCTTCAACT 504
Query 509 TCCTCCAATTCATCAACATTAACCGATCTTTGGAAATCCCGAACCGAATTCTGTACCGCC 568
|| || |||||||| ||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 505 TCATCAAATTCATCGACATTAACCGATCTTTGGAAATCCCAAACCGAATTCTGTACAGCC 564
Query 569 TTTGGTGGACCATCTCAAACCAACAACAACAAAACCAAATGCTTTAATGGTGAACCGGTT 628
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 565 TTTGGTGGACCATCTCAAACCAACAACAACAAAACCAAATGCTTCAATGGTGAACCGGTT 624
Query 629 AACAAAGACAC------------------CGATGTTAAGCCACCAAAAGGAGTATGTCTT 670
|||| |||||| ||||||||| |||| |||||| ||||||||
Sbjct 625 AACAGAGACACTAGTGATGATGATGAGGATGATGTTAAGACACCTAAAGGAATATGTCTT 684
Query 671 GAGAAGATAGGAACCGGATCTTA-CTTAAACATGGTGGCTCATCCTGATGGTTCTAACCG 729
|||||||||||||| || ||||| ||| |||||||| ||||||||||||||||| |||||
Sbjct 685 GAGAAGATAGGAACTGGTTCTTACCTT-AACATGGTCGCTCATCCTGATGGTTCGAACCG 743
Query 730 GGCCTTTTTCTCTAACCAACCTGGTAAGATTTGGTTAGGAACAATACCGGATCAAGACTC 789
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 744 GGCCTTTTTCTCTAACCAACCTGGTAAGATTTGGTTAGGTACAATACCGGATCAAGACTC 803
Query 790 AGGTGAACCGATGGAAATCGATGAATCGACTCCTTTTGTTGATATTACCGATCAAGTCAG 849
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 804 AGGTAAACCGATGGAAATCGATGAATCAACTCCTTTTGTTGATATTACCGATCAAGTTAG 863
Query 850 TTTCGATACGCAGTTTGGTATGATGGGAATGGCGTTTCATCCCAAATTCGCAGAGAACGG 909
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 864 TTTCGATACGCAGTTTGGTATGATGGGAATGGCGTTTCATCCTAAGTTCGCAGAGAACGG 923
Query 910 GCGGTTTTTCGCGTCTTTTAACTGCGATAAAGTCAAATCTCCTGGATGTTCTGGTCGTTG 969
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 924 GCGGTTTTTCGCGTCTTTTAACTGCGATAAAGTCAAATCTCCTGGATGCTCTGGTCGTTG 983
Query 970 TGCTTGCAATTCTGATGTAAATTGTGATCCTTCTAAGCTTCCTAAAGACGATGGCGCGCA 1029
|||||||||||||||||| || ||||||||||| |||||||||||||| |||||| || |
Sbjct 984 TGCTTGCAATTCTGATGTTAACTGTGATCCTTCGAAGCTTCCTAAAGATGATGGCACG-A 1042
Query 1030 -TCCTTGTCGTTATCAGACCGTCGTGGCTGAGTATACCGCGAACGGTACTTCCTCGAGCC 1088
|||||||||||||||||||| ||| | ||||||||||| |||||||||||||||||||
Sbjct 1043 CGCCTTGTCGTTATCAGACCGTTGTGTCCGAGTATACCGCAAACGGTACTTCCTCGAGCC 1102
Query 1089 CTTCAACGGCAAAGATTGGTAAAGCCTCTGAAGTGAGGAGGATTTTCACTTTGGGACTTC 1148
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1103 CTTCAACGGCAAAGATTGGTAAAGCATCTGAAGTGAGGAGGATTTTCACTATGGGACTTC 1162
Query 1149 CGTATTCGTCATCTCACGGTGGTCAGATTCTCTTTGGACCTGATGGGTATTTGTATCTCA 1208
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1163 CGTATTCTTCATCTCACGGTGGTCAGATTCTCTTTGGACCTGACGGGTATTTGTATCTCA 1222
Query 1209 TGACTGGTGACGGAGGAGGAGTTTCAGATACTCACAACTTTGCACAGAACAAGAAGTCGT 1268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 TGACTGGTGACGGAGGAGGAGTTTCAGATACTCACAACTTTGCACAGAACAAGAAGTCGT 1282
Query 1269 TACTTGGAAAAATCTTGAGGCTTGATGTTGATGTTATGCCAAGCGTATCTGAAATCTCTA 1328
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1283 TGCTTGGCAAAATCTTGAGGCTTGATGTTGATGTTATGCCAAGCGTATCTGAAATCTCTA 1342
Query 1329 AGCTTGGTTTATGGGGAAACTACTCCATCCCAAAGAACAATCCTTTCCAAGGCAATGAAA 1388
||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||
Sbjct 1343 AGCTTGGTTTATGGGGAAACTACTCTATACCAAAAAACAATCCTTTCCAAGGAAATGAAA 1402
Query 1389 ATGAGCAGCCTGAGATTTGGGCTTTAGGTCTAAGAAATCCATGGCGCTGCAGCTTCGATT 1448
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1403 ATGAGCAGCCTGAGATTTGGGCTTTAGGGCTACGAAATCCATGGCGCTGCAGCTTCGATT 1462
Query 1449 CCGAAAGACCAGATTACTTCTTGTGCGCCGATGTTGGAAAGGATACATATGAAGAAGTTG 1508
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1463 CCGAAAGACCAGATTACTTCTTGTGCGCAGATGTCGGAAAGGATACATATGAAGAAGTTG 1522
Query 1509 ATATCATAACAAAGGGTGGAAACTATGGCTGGAGAACTTATGAAGGACCTTATGTTTTCT 1568
|||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1523 ATATCATAACAATGGGTGGAAACTATGGCTGGAGAACTTACGAAGGACCATATGTTTTCT 1582
Query 1569 CCCCATTATCGCCTTTTGGAGAAAATGTTTCCGCGGATTCAAACCTTACATTCCCAATTC 1628
| || ||||||||||||||||||||||||||| ||||||||||||| |||||||| ||||
Sbjct 1583 CACCGTTATCGCCTTTTGGAGAAAATGTTTCCTCGGATTCAAACCTGACATTCCCCATTC 1642
Query 1629 TCGGTTACAACCACTCTGAAGTGAACAAACATGAAGGATCTGCTTCCATTATTGGAGGTT 1688
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1643 TCGGTTACAACCACTCTGAAGTGAACAAACATGAAGGATCTGCTTCCATCATTGGAGGTT 1702
Query 1689 ACTTCTATCGATCCAACACTGATCCTTGCTCTTATGGAACGTACTTGTATGCAGATCTTT 1748
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 ACTTTTATCGATCCAACACTGATCCTTGCTCTTATGGAACGTACTTGTATGCAGATCTTT 1762
Query 1749 ATGCAAACGCAATGTGGGCAGCGATTGAATCACCAAAAGATAGTGGAAACTTCACAGACT 1808
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||
Sbjct 1763 ATGCAAACGCAATGTGGGCAGCGATCGAATCACCAGAAGATAGTGGAAACTTCACGGACT 1822
Query 1809 CTCTAATACCGTTCAGTTGCAGTAAGGATTCGCCGATTAAGTGTACCGCGGCTCCAGGAG 1868
||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||||||||||
Sbjct 1823 CTCTAATACCGTTTAGTTGCAGCAAGGATTCACCGATGAAGTGTACCGCAGCTCCAGGAG 1882
Query 1869 GAGCTAGCTCAGGACCTGCTCTTGGTTACATCTACTCTTTTGGACAAGACAATAACAAGG 1928
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1883 GAGCTAGCTCAGGACCTGCTCTTGGTTACATTTACTCATTTGGACAAGACAATAACAAGG 1942
Query 1929 ACATACATTTGCTCACGAGCTCTGGTGTGTATCGAGTTGTTCGTCCTAGTCGTTGTAACT 1988
|||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 1943 ACATACATTTACTCACGAGCTCTGGTGTGTATCGAATTGTTCGTCCTAGTCGCTGTAACT 2002
Query 1989 TAGCTTGCTCCAAAGAAAACACTACCGCTTCTACCGGAAAACAGAACCCTGCTGGTGCTG 2048
||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||| |||
Sbjct 2003 TAGCTTGCTCCAAGGAAAACACCACCGCTTCTGCCGGAAAACAGAACCCTGCTGGTTCTG 2062
Query 2049 CTCCTCCTCGGCCTTTACCTTCTTCTGCAAGAAAGCTCtgtttctctttgtttttgttag 2108
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2063 CTCCTCCTCAGCCTTTACCTTCTTCTGCAAGAAAGCTCTGTTTCTCTGTGTTTTTGTTAT 2122
Query 2109 tgtcgttgttgtttatgtttttaacggtt-ttaGATTAGAATGATGATTGTTTCAGACTC 2167
||||||||||| | |||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 2123 TGTCGTTGTTGATGATGTTTTTAACG-TTGTTAGATTAGAATGATGATTGTTTCAGACTC 2181
Query 2168 TGTTTTGTAACATTTCTTATGGATATTATTCAAAAACTATTTTGTGATTGCTTATATTAG 2227
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2182 TGTTTTGTAACAGTTCTTATGGATGTTATTCAAAAACTATTTTGTGATTGCTTATATTAG 2241
Query 2228 ACGAAATCATATATAATAAACCATTAAGTTTGAGTTCTTTTGT 2270
||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 2242 ACGAACTCATATGTAATAAACCATTAAGTTTGAGTTCTTTTGT 2284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112650022980
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5