BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496447 Length=1723 Score E Sequences producing significant alignments: (Bits) Value AT5G62640.3 | Symbols: | proline-rich family protein | chr5:25... 2248 0.0 > AT5G62640.3 | Symbols: | proline-rich family protein | chr5:25149433-25152541 REVERSE LENGTH=1964 Length=1964 Score = 2248 bits (1217), Expect = 0.0 Identities = 1421/1514 (94%), Gaps = 35/1514 (2%) Strand=Plus/Plus Query 229 TAACAAGAAAGAGAGGCAAAAGGTTA-GAGAGGTTGGAATTTTGAAGAAGGATCCTGAAC 287 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 346 TAACAAGAAAGAGAGGCAAAAGG-TACGAGAGGTTGGAATTTTGAAGAAGGATCCTGAAC 404 Query 288 AAATCAAGGAACAGATCAGGAAACTTGATATGTCTAAGGCGGAAGGTGCTTTGGACAAAG 347 | |||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 405 AGATCAAGGATCAGATCAGGAAGCTTGATATGTCAAAGGCGGAAGGTGCTTTGGACAAAG 464 Query 348 CAAGAAAACATAAAAAGAGACAGCTTGAAGATACTCTAAAAATGGTGGTGAAGAAGAGAA 407 ||||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 465 CAAGAAAACATAAAAAGAGACAGCTTGAAGATACTCTTAAAA---TGGT----------- 510 Query 408 AGGAATATGATGAGAAAAAGAAGGAGCAAGGAGAGGCAACAACCTCTGTTATGTTCAGTC 467 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 511 -GGAATATGATGAGAAAAAGAAGGAGCAAGGAGAGGCAACAACCTCTGTTATGTTCAGTC 569 Query 468 ATCTACCCCCTCAACGAAGATTAACTGGCGAAGAGGACTTAAAACCAGAGGACTCTGTGT 527 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 570 ATCTACCCCCTCAGCGAAGATTAACTGGCGAAGAGGACTTAAAACCAGAGGACTCTGTTT 629 Query 528 ATTATCACCCTACTTTGAACCCAACTGGTGCCCCACCCCCGGGAAAGCCACCAATGTATA 587 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 630 ATTATCACCCTACTTTGAACCCAACTGGTGCACCACCCCCGGGAAAGCCACCAATGTATA 689 Query 588 A-T--T-CAT----C--G--A-----T-AGATGGTGCTTCATCTAGTGGTGCTGCATTGT 629 | | | ||| | | | | ||||||||||||||||||| |||||||||||| Sbjct 690 ATTCATCCATAGGACTTGCTATCTCCTCAGATGGTGCTTCATCTAGTAGTGCTGCATTGT 749 Query 630 CTTCTATTACCGAGTCAGAAGATTCCGCCTTAGTTACCCCTCCTCCACTTCCTCCTCTAC 689 ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 750 CTTCTATTACCGAGTCAGAAGATTCCGTCTTAGTTAATCCTCCTCCACTTCCTCCTCTAC 809 Query 690 CGGATGGGAATAATGCTTTATCTGCTTCTTTGCCACTTCCACCTCCACCTCCTTTGCCAC 749 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 810 CGGATGGGGATAATGCTTTATCTGCTTCTTTGCCACTTCCACCTCTACCTCCTTTGCCAC 869 Query 750 CAACTACAGGCCTTACTTTGCCACATTCATCATTTCCACCACCACCTCCGGGGCCACCAC 809 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 870 CAACTACAGGCCTTACTTTGCCACATTCACCATTTCCACCACCACCTCCGGGGCCACCAC 929 Query 810 CAAAAGAGCAGGATTTGGTTCGtcctcctcttcctccacctcctccacttcctcaatctt 869 |||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||| Sbjct 930 CAAAAGAGCAGGATTTTGTTCGTCCTCCTCTTCCCCCACCTCCTCAACTTCCTCAATCTT 989 Query 870 cccaaccacctcctcctGGTCTAAGTGGAAGTGAAGGCGATGGTAGATTCCCGGAATCAT 929 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 990 CCCAACCACCTCCTCCTGGTCTAAGTGGAAGTCAAGGCGATGGTAGATTCCCGGAATCAT 1049 Query 930 CAGATTTCACCTTTGACAATCGCAAGAACGCTAATATAACTTCCGTCCCTCCTCTCCCAC 989 ||||||| ||||| |||||||||| ||| |||||||||||||||||||||| |||||||| Sbjct 1050 CAGATTTTACCTTCGACAATCGCATGAATGCTAATATAACTTCCGTCCCTCTTCTCCCAC 1109 Query 990 CACCCGGCCTTCCAAACAACGAATCTGAGAGTGGTCCAGCAGAATCTAACGGGAGTAGTT 1049 |||| ||| |||||| ||| |||||||||||| |||| ||||||||||||| ||||||| Sbjct 1110 CACCTGGCATTCCAAGCAATGAATCTGAGAGTCGTCCTGCAGAATCTAACGCCAGTAGTT 1169 Query 1050 TTCAAAACGCTAACCTCTCTAAGATGGTTGcaccaccaccaccaccaccTTTACATCAGC 1109 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 1170 TTCAAAACGCTAACCTCTCAAAGATGGTTGCACCACCACCACCAGCACCTTTACATCAGC 1229 Query 1110 AGCATCAATCAACATTTGCAGGAGCTGCTGCTCCACTGTCTAATTTTCAACCTGATGTTC 1169 | |||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 1230 AACATCAATCAACATTTGCAGGAGCTGCTGCTTCACTGACTAATTTTCAACCTGATGTTC 1289 Query 1170 ATCCGCCTCCAGGAATGTTGCGTTTTCCACCTCCACCGCCTCCACTCGATATGCATCCTC 1229 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1290 ATCCTCCTCCAGGAATGTTGCGTTTTCCACCTCCACCGCCTCCACTCGATATGCATCCTC 1349 Query 1230 CTCATCCAGGAATGTTCGGTGGTCATCTGATCCCGAGACCACCGTATGGCCCACCGCCTG 1289 ||||||| |||||||| | ||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1350 CTCATCCTGGAATGTTTGTTGGTCATCTAATCCCAAGACCACCGTATGGCCCACCGCCTG 1409 Query 1290 GACCGCCTCCTATGATGAGACCGCCGCTTCCACCAGGACCACCACCGTCTAGTTTTCAAG 1349 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 1410 GACCGCCTCCTATGATGAGACCGCCACTTCCACCAGGACCACCACCGTCTAGTTTTCAAG 1469 Query 1350 ATGGTCAAGCAATGATCAGACCATATGTACCAAACAAACCATCTTTTGTAAAATCCGCTG 1409 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1470 ACGGTCAAGCAATGATCAGACCATATGTACCAAACAAACCATCTTTTGTAAAATCCGCTG 1529 Query 1410 CTCCTACTGTTGTCAGGAGACCACTCGCTCAACACACACCTGAGCTTACATCCATGGTCC 1469 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1530 CTCCTACTGTTGTCAGGAGACCACTCGCTCAACACACACCTGAGCTTACATCCATGGTCC 1589 Query 1470 CTGCGTCGGTTCGAGTCAAAAGAGAATCAGCAACTGTGACCAAACCAAAGCCAAAGACTT 1529 |||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| Sbjct 1590 CTGCGTCGGTTCGAGTCAGAAGAGAATCAGCAACTGTGACGAAACCAAAGCCAAAGACTT 1649 Query 1530 CGATAGCCACAAGCTTGAGTTTTACACCAAGGGCTATGGCTTCTGCTGCATCGGTGAAGG 1589 |||||||| | |||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 1650 CGATAGCCTCGAGCTTGAGTTTTACACCAAGAGCTATGGCTTCTGCTGCAACGGTGAAGG 1709 Query 1590 TAGAGTCAGCCAAGACATCTGCAGCTTCAAAGCCACAGAGCATTGATGATTCGTACACAG 1649 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1710 TAGAGCCAGCCAAGACATCTGCAGCTTCAAAGCCACAGAGCATTGATGATTCGTACACAG 1769 Query 1650 CTTTCTTAGAGGACATGAAAGCTCTTGGAGCACTTGATGGATAAACGTTAGACTTATAGT 1709 |||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |||| Sbjct 1770 CTTTCTTAGAGGACATGAAAGCTCTTGGCGCACTTGATGGATAAACTTTAGAGTTGTAGT 1829 Query 1710 ATTCAAACTAAGTT 1723 ||||||| ||||| Sbjct 1830 CTTCAAACAAAGTT 1843 Score = 235 bits (127), Expect = 1e-60 Identities = 136/140 (97%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 91 ATCTGTGAACAAATCCTAAATCGGTGGGAGGGAGATTGAAGAACGGTAAATCGG-AAATA 149 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||| Sbjct 133 ATCTGTGAGCAAATCCTAAATCGGTGGGAGGGAGATTGAAGAACGGTAAA-CGGAAAATA 191 Query 150 TGAAGACGACGAAGGGAGGCAAAGTGATGAACCCTACTGATGCTTATCGCAAGCAGATTC 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 192 TGAAGACGACGAAGGGAGGCAAAGTGATGAACCCTACTGATGCTTATCGCAAGCAGATTC 251 Query 210 GCAAGAGGGAAATTAAGCGT 229 ||||||| |||||||||||| Sbjct 252 GCAAGAGAGAAATTAAGCGT 271 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85190324865 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5