BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496454 Length=926 Score E Sequences producing significant alignments: (Bits) Value AT5G62720.1 | Symbols: | Integral membrane HPP family protein ... 1415 0.0 AT3G47980.1 | Symbols: | Integral membrane HPP family protein ... 503 1e-141 > AT5G62720.1 | Symbols: | Integral membrane HPP family protein | chr5:25191842-25195009 FORWARD LENGTH=1023 Length=1023 Score = 1415 bits (766), Expect = 0.0 Identities = 849/890 (95%), Gaps = 2/890 (0%) Strand=Plus/Plus Query 1 GTCTCTCTCCTATTGGCTAAGAAAACAGAGAGAATCGGTATTTTTAGCCTTTGCTAAGAT 60 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTCTGTCTCCTATTGGCTAAGAAAACAGAGAGAATCGGTATTTTTAGCCTTTGCTAAGAT 60 Query 61 ATTTTGATCAAAAATCCCACTTTTGAGCGGTCTTATCTTTATTCTCCACCTCAAAGGACC 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATTTTGATCAAAAATCCCACTTTTGAGCGGTCTTATCTTTATTCTCCACCTCAAAGGACC 120 Query 121 ATTTCTCATGGCTTCTGTTCCGGTGAAACCACTACCTCTTCTTCGCCGGAACATCACCTC 180 |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| Sbjct 121 ATTTCTCATGGCTTCTGTTCCGGTGAGACCTCTACCTCTTCTTCGCCGGAACATCACCTC 180 Query 181 GACGACGGCTTCGAAATCATCTCCAATGCTCGCCAACGTTTCGAGCCGGCATTTTCTCGG 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 181 GACGACGGCTTCGAAATCATCTCCAATGCTCGCCAACGTTTCGAGCCGGCATTCTCTCGG 240 Query 241 GATCTTTACGTATAAAGAATCCTTGAGGCAAATGAGAACTCCAGCGTCTTT-AAGCCACC 299 ||||| ||||||| | |||| |||| |||||| | |||||| || || | || ||||| Sbjct 241 GATCTCTACGTATGATGAATTTTTGAAGCAAATAAAAACTCCGGCAACTGTGAA-CCACC 299 Query 300 GCCGGAGAGTAAGTACGGTGGTGTCATCGGCGGGAAACTTGACGGCGCCGTCGTGGGACT 359 | ||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| | Sbjct 300 GGCGGCGAGTAAGTACGGTGGTGGCGTCGGCGGGAAACTTGACGGCGCCGTCGTGGGATT 359 Query 360 CGTGGAAGCCAGATAAGACGGCGGCGGCTACGGCTCTGTTGCTGAGTGACGTCATTTGGC 419 |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 360 CGTGGAAGCCTGATAAGACGGCGGCGGCTACGGCTCTTTTGCTGAGTGACGTCATATGGC 419 Query 420 CTGCAGCTGGAGCGTTTGCGGCAATGGCAATATTGGGAAGAATGGATCAAATGCTATCTC 479 |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 420 CTGCTGCTGGAGCGTTTGCGGCAATGGCATTATTGGGAAGAATGGATCAAATGCTATCTC 479 Query 480 CAAAAGGGATTTCAATGTCAGTTGCACCACTTGGTGCTGTCTCCGCCATTCTTTTCATCA 539 | ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 480 CGAAAGGCATTTCAATGTCAGTTGCACCACTTGGCGCAGTCTCCGCCATTCTTTTCATCA 539 Query 540 CTCCTTCTGCTCCTGCTGCTCGGAAATACAATATGTTTTTGGCTCAAATAGGTTGTGCTG 599 | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 540 CCCCTTCTGCTCCTGCTGCTCGGAAATACAATATATTTTTGGCTCAAATAGGTTGTGCTG 599 Query 600 CGATTGGAGTGGTAGCTTTCTCCGTCTTCGGCCCAGGCTGGCTCGCCCGGAGTGTCGCCC 659 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 600 CGATTGGGGTGGTAGCTTTCTCCGTCTTCGGCCCAGGCTGGCTCGCCCGGAGTGTCGCCC 659 Query 660 TCGCCGCTTCCATCGCTTTTATGGTCATTACTCGTGCCAATCACCCTCCTGCGGCGAGCT 719 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 TCGCCGCTTCCATCGCTTTTATGGTCATTACTCGTGCCAATCACCCTCCTGCGGCGAGCT 719 Query 720 TACCATTAATGTTCATAGATGGAGCAAAGTTCCATCACTTGAATTTCTGGTATGCATTGT 779 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 720 TACCACTAATGTTCATAGATGGAGCAAAGTTCCATCACTTGAATTTCTGGTACGCATTGT 779 Query 780 TCCCAGGTGCAGCTGCTTGTGTCATCCTATGCCTTCTCCAATCGATCGTATGTTACTTGA 839 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 780 TCCCAGGTGCAGCTGCTTGTGTCATCCTCTGCCTTCTCCAATCGATCGTATGTTACTTGA 839 Query 840 AGGAAAACATGAAATTTTGATGAATCATCAAGCAACACGTACGATCGAAT 889 ||||||||||||||||||||||||||| ||||| ||| |||||||||||| Sbjct 840 AGGAAAACATGAAATTTTGATGAATCACCAAGCGACATGTACGATCGAAT 889 > AT3G47980.1 | Symbols: | Integral membrane HPP family protein | chr3:17710374-17712866 FORWARD LENGTH=1097 Length=1097 Score = 503 bits (272), Expect = 1e-141 Identities = 437/516 (85%), Gaps = 14/516 (3%) Strand=Plus/Plus Query 353 TGGGACTCGTGGAAGCCAGATAAGACGGCGGCGGCTACGGCTCTGTTGCTGAGTGACGTC 412 ||||| || |||||||| || ||||| | ||| | ||||| || ||||||||||||| Sbjct 362 TGGGAGTCTTGGAAGCCGGAAAAGAC--C-ACGG-T--GGCTCCGTCGCTGAGTGACGTC 415 Query 413 ATTTGGCCTGCAGCTGGAGCGTTTGCGGCAATGGCAATATTGGGAAGAATGGATCAAATG 472 || ||||||||||| ||||| |||||||| ||||| ||| |||||||||| ||||||||| Sbjct 416 ATCTGGCCTGCAGCAGGAGCCTTTGCGGCGATGGCGATAATGGGAAGAATAGATCAAATG 475 Query 473 CT-ATCTCCAAAAGGGATTTCAATGTCAGTTGCACCACTTGGTGCTGTCTCCGCCATTCT 531 || | | || |||||||| |||||||| ||||||||||||||||||||||| |||||||| Sbjct 476 CTAAAC-CCTAAAGGGATCTCAATGTCGGTTGCACCACTTGGTGCTGTCTCTGCCATTCT 534 Query 532 TTTCATCACTCCTTCTGCTCCTGCTGCTCGGAAATACAATATGTTTTTGGCTCAAATAGG 591 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 535 CTTCACCACTCCTTCTGCTCCTGCTGCTCGGAAATACAATATGTTCACGGCTCAAATAGG 594 Query 592 TTGTGCTGCGATTGGAGTGGTAGCTTTCTCCGTCTTCGGCCCAGGCTGGCTCGCCCGGAG 651 |||||| || ||||||||| | || ||||||| ||| || ||| ||||||| ||||| || Sbjct 595 TTGTGCAGCCATTGGAGTGTTGGCGTTCTCCGCCTTTGGGCCAAGCTGGCTAGCCCGCAG 654 Query 652 TGTCGCCCTCGCCGCTTCCATCGCTTTTATGGTCATTACTCGTGCCAATCACCCTCCTGC 711 | ||| ||||||||||||||||| || |||||||| ||||||||||| || || ||||| Sbjct 655 TACCGCTCTCGCCGCTTCCATCGCGTTCATGGTCATCACTCGTGCCAACCATCCGCCTGC 714 Query 712 GGCGAGCTTACCATTAATGTTCATAGATGGAGCAAAGTTCCATCA-CTTGAA-TTTCTGG 769 |||||| |||||| || |||| ||||| ||||||||||| ||| | || ||| ||| ||| Sbjct 715 GGCGAGTTTACCACTACTGTTTATAGACGGAGCAAAGTTGCATAAACT-GAACTTT-TGG 772 Query 770 TATGCATTGTTCCCAGGTGCAGCTGCTTGTGTCATCCTATGCCTTC-TCCAATCGATCGT 828 || ||||| ||||| |||||||| |||||| || | || ||| ||| ||||| ||||||| Sbjct 773 TACGCATTATTCCCCGGTGCAGCCGCTTGTATCCTTCTCTGC-TTCCTCCAAGCGATCGT 831 Query 829 ATGTTACTTGAAGGAAAACATGAAATTTTGATGAAT 864 ||||||||||||||||| | ||||||||| |||| Sbjct 832 GGGTTACTTGAAGGAAAACTTAAAATTTTGACGAAT 867 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 45260966447 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5