BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496464
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62810.1 | Symbols: PEX14, ATPEX14, PED2 | peroxin 14 | chr5... 2848 0.0
AT5G62800.1 | Symbols: | Protein with RING/U-box and TRAF-like... 183 4e-45
AT5G62820.1 | Symbols: | Uncharacterised protein family (UPF04... 106 9e-22
> AT5G62810.1 | Symbols: PEX14, ATPEX14, PED2 | peroxin 14 | chr5:25220147-25223789
FORWARD LENGTH=1918
Length=1918
Score = 2848 bits (1542), Expect = 0.0
Identities = 1762/1865 (94%), Gaps = 27/1865 (1%)
Strand=Plus/Plus
Query 43 ACCTCGATTTGAGCAAAACCTGATTTACTCTCATCCTCATCGTCTCTCATCTTCGAGATT 102
||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 70 ACCTCGATTTGAGCAAATCCTGATTTACTCTCATCCTCATCATCTCTCATCATCGAGATT 129
Query 103 TATAGTCTCTTTCGCCGCTTGGATTCTTCCAAGGTTGGTGAGCTGCTATGGCAACTCATC 162
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 130 CATAGTCTCTTTTGCCGCTTGGATTCTTCCAAGGTTAGTGAGCTGCTATGGCAACTCATC 189
Query 163 AGCAAACTCAACCTCCTTCCGATTTTCCCGCTCCTGCCGATGACAATTCCCAGATTCCAG 222
||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 190 AGCAAACGCAACCTCCTTCCGATTTTCCCGCTCTTGCCGATGAAAATTCCCAGATTCCAG 249
Query 223 AGGCTACAAAGCCTGCTAATGAGGTTCAACAAGCTACCATAGCTCAGGAAACTGTTAAGC 282
||||||| |||||||||||||||||||| ||||||||| | | | | | | |
Sbjct 250 AGGCTACTAAGCCTGCTAATGAGGTTCAGCAAGCTACC--A--T-A-G---C---T---C 294
Query 283 AGGATCCTCCAACATCTGTGTTTAAGAATTCAGAACCAATTCGAGAGGATCAAATTCAGA 342
||||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||
Sbjct 295 AGGATCCTCCAACATCTGTGTTTAAGAATTCTGAACCAATACGGGAGGATCAAATTCAGA 354
Query 343 ACGCTATCAAATTTCTTTCGCACCCGAGGGTTAGAGGCTCTCCTGTTATACATAGAAGAT 402
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 ACGCTATCAAATTCCTTTCGCACCCGAGGGTTAGAGGCTCTCCTGTTATACATAGAAGAT 414
Query 403 CTTTTCTTGAGAGGAAAGGACTCACTAAAGAAGAGATTGACGAAGCATTCCGCCGTGTTC 462
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 415 CTTTTCTTGAGAGGAAAGGTCTCACTAAAGAAGAGATTGACGAAGCTTTCCGCCGTGTTC 474
Query 463 CTGATCCACCGCCAAGTTCGCAGACAACTGTT---ACAAGTCAAGATGGACAGCAAGCAG 519
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 475 CTGATCCACCACCAAGTTCGCAGACAACTGTTACAACAAGTCAAGATGGACAGCAAGCAG 534
Query 520 TGTCAACTGTTCCGCCACAAGCTATGCAGCCTGTAGTAGCTGCTCCTGCTCCACTCGTTG 579
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 535 TGTCAACTGTTCAGCCACAAGCTATGCAGCCTGTAGTAGCTGCTCCTGCTCCACTCATTG 594
Query 580 TGACTCCGCAGGCAGCTTTTCTCTCTCGGTTTCGCTGGTACCATGCTATTCTTGCTGTAG 639
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 595 TGACTCCACAGGCAGCTTTTCTCTCTCGGTTTCGCTGGTACCATGCTATTCTTGCTGTTG 654
Query 640 GAGTACTAGCAGCTTCTGGTGCCGGAACAGCTGTTTTTATAAAGAAATCTCTCATACCCA 699
||||||| ||||| ||||||||||| |||||||||||||| |||| ||||||||||||||
Sbjct 655 GAGTACTTGCAGCCTCTGGTGCCGGTACAGCTGTTTTTATTAAGAGATCTCTCATACCCA 714
Query 700 GATTTAAATCCTGGGTCCAAAGAATTATGTTGGAAGAAGAAACTGACCCTCTGAAGAAAG 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GATTTAAATCCTGGGTCCAAAGAATTATGTTGGAAGAAGAAACTGACCCTCTGAAGAAAG 774
Query 760 CTGATGCTAAACCTAGCTTAGCTGAAGAAGCTGTAGCTGCAGCCAAAGCTGCTTCTGCGG 819
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CTGATGCTAAACCTAGCTTAGCTGAAGAAGCTGTAGCTGCAGCCAAAGCTGCTTCTGCGG 834
Query 820 CTGCTTCTGATGTAGCCAGGGTTAGTCAGGAAATGATGATAACAAAGAATGAAGAGAGGA 879
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 CTGCTTCTGATGTAGCCAGGGTTAGTCAGGAAATGATGATAACAAAGAATGAAGAGAGGA 894
Query 880 AATATTTTGAGGACTTAACGCGCCTGTTAGGTGTCCAAGTACAAGAAATGAAGTCCTTGA 939
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 895 AATATTTTGAGGACTTAACGCACCTGTTAGGTGTCCAAGTACAAGAAATGAAGTCCTTGA 954
Query 940 GCAATAATATCCGTAGGCTCGAAGGACAACCCAACAACATTCCAAAGATTTATTCCGCTG 999
||||||||||||||| ||| ||||| ||| |||||||||| |||||||||||||| ||||
Sbjct 955 GCAATAATATCCGTAAGCTTGAAGGGCAATCCAACAACATCCCAAAGATTTATTCAGCTG 1014
Query 1000 ATCAAGAGGTTTATAATGGTTCAGTCACTGCAGCAAGGAAACTCTATACAAATGGCAGCA 1059
|||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||
Sbjct 1015 ATCAAGAGGTTTATAATGGTTCGGTCACTACAGCAAGGAAACCCTATACAAATGGCAGCA 1074
Query 1060 ACGTTGATTATGACACACGTTCAGCACGATCTGCATCTCCTCCTGCGCCACCAGCTGATT 1119
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1075 ATGTTGATTATGACACACGTTCAGCACGATCTGCATCTCCTCCTGCGGCACCAGCTGATT 1134
Query 1120 CCTCTGTGCCCCCTCATCCAAAGTCATACATGGATATAATGTCTATGATCCAGAGAGGAG 1179
| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1135 CGTCGGCGCCCCCTCATCCAAAGTCATACATGGATATAATGTCTATGATCCAGAGAGGAG 1194
Query 1180 AGAAGCCTTCAAACATTCGGGAGATTAACGACATGCCGCCTAATCCGAACCAACCACTAT 1239
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1195 AGAAGCCTTCAAACATTCGGGAGATTAACGACATGCCGCCCAATCCAAACCAACCACTAT 1254
Query 1240 CAGATCCACGCATCGCTCCCAAATCTAAGCCATGGGACTATGGTCAAGCGCCACAAGACG 1299
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1255 CAGATCCACGCATTGCTCCCAAATCAAAGCCATGGGACTATGGTCAAGCGCCGCAAGACG 1314
Query 1300 AGAGTTCTAATGGTCATTGGTGGCAACAGAAAAACCCTAGATCCACGGATTTCGGCTATG 1359
||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 1315 AGAGTTCCAATGGTCAATGGTGGCAACAGAAAAACCCTAGATCCACGGATTTCGGATACG 1374
Query 1360 AGACAACAACAGCGGCGCGTTTCACTGGTAACCAAAATGAAACAAGTACAGTGGAACCAG 1419
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1375 AGACAACAACAGCGGCGCGTTTCACTGCTAACCAAAATGAAACAAGTACAATGGAACCAG 1434
Query 1420 CAGCTTTCCAGAGGCAACGGTCATGGGTACCTCCACAACCACCTCCAGTTGCCATGGCAG 1479
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1435 CAGCTTTCCAGAGGCAACGATCATGGGTACCTCCACAACCACCTCCAGTTGCCATGGCAG 1494
Query 1480 AAGCAG-CAGAGGCCATTCGCCGTCCTAAGCCACGAGCTAAGATAGACCAAGAAGCAGCT 1538
|||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1495 AAGCAGTC-GAGGCCATTCGCCGTCCTAAGCCACAAGCTAAGATAGACCAAGAAGCAGCT 1553
Query 1539 GCTAGTGATGATCAGTCAGGTGTGAGCGATGAGTTACAGAAGATCACTAAGTTCTCTGAA 1598
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 1554 GCTAGTGATGGCCAGTCAGGTGTGAGCGATGAGTTACAGAAGATCACTAAATTCTCCGAA 1613
Query 1599 TCTGGTGGTGATGGATCAGGAGGAATTCAGATCACAGAGATAGAAGAAGAAACAGAACAG 1658
|||||||||||||| |||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 1614 TCTGGTGGTGATGGGTCAGGAGGAATTAAGATCGCAGAGATACAAGAAGAAACAGAACAG 1673
Query 1659 CAACATATCAGCCAAGAAGGGA-CTACAAACAATAAT--T-AGGGGTTCTTGATACTTTA 1714
|||||||||||||| ||||||| ||| |||||||||| | ||||||| |||||||||||
Sbjct 1674 CAACATATCAGCCAGGAAGGGAACTAAAAACAATAATAATTAGGGGTTATTGATACTTTA 1733
Query 1715 TGAGGTTTGCTTGTAAGAAAACATGCATTTAGGTCTTGGGATATATCACCACCTACCTTC 1774
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1734 TGAGGTTTGCCTGTAAGAAAACATGCATTTAGGTCTTGGGATTTATCACCACCTACCTTC 1793
Query 1775 ATTAAATAATATATATCTTGCTGCACAAGTAAATTCAGTCATTTGAT--TG-CTTGTCTT 1831
||| ||||| |||| ||||||| |||||||||| ||||||||||||| | ||||||||
Sbjct 1794 ATTTAATAAAATATGTCTTGCTACACAAGTAAACTCAGTCATTTGATGATTACTTGTCTT 1853
Query 1832 ATTTTAATATATCGAAACTTGTATCACACATTACCATTCTAAGCTATAAGAGAGACTGTA 1891
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1854 ATTTTAATATTTTGAAACTTGTATCACACATTACCATTCTAAGCTATAAGAGAGACTGTA 1913
Query 1892 CATAG 1896
|||||
Sbjct 1914 CATAG 1918
> AT5G62800.1 | Symbols: | Protein with RING/U-box and TRAF-like
domains | chr5:25218663-25219967 FORWARD LENGTH=1047
Length=1047
Score = 183 bits (99), Expect = 4e-45
Identities = 124/136 (91%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 230 AAAGCCTGCTAATGAGGTTCAACAAGCTACCATAGCTCAGGAAACTGTTAAGCAGGATCC 289
||||||||||||||||||||| |||| |||||| |||||||||||||||| | |||||||
Sbjct 909 AAAGCCTGCTAATGAGGTTCAGCAAGTTACCATTGCTCAGGAAACTGTTATGGAGGATCC 968
Query 290 TCCAACATCTGTGTTTAAGAATTCAGAACCAATTCGAGAGGATCAAATTCAGAACGCTAT 349
|||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 969 TCCAACGTCTCTGTTTAAGAATTCAGTACCAATTCGAGAGGATCAAATTCAGAACGCTAT 1028
Query 350 CA-AATTTCT-TTCGC 363
|| || ||| |||||
Sbjct 1029 CACAAATTCCATTCGC 1044
> AT5G62820.1 | Symbols: | Uncharacterised protein family (UPF0497)
| chr5:25223727-25225021 REVERSE LENGTH=1118
Length=1118
Score = 106 bits (57), Expect = 9e-22
Identities = 61/63 (97%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 1834 TTTAATATATCGAAACTTGTATCACACATTACCATTCTAAGCTATAAGAGAGACTGTACA 1893
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 TTTAATATTTTGAAACTTGTATCACACATTACCATTCTAAGCTATAAGAGAGACTGTACA 1059
Query 1894 TAG 1896
|||
Sbjct 1058 TAG 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93875019150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5