BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg496476
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT5G62910.1 | Symbols: | RING/U-box superfamily protein | chr5... 1794 0.0
AT3G48070.2 | Symbols: | RING/U-box superfamily protein | chr3... 152 8e-36
> AT5G62910.1 | Symbols: | RING/U-box superfamily protein | chr5:25250256-25252236
FORWARD LENGTH=1543
Length=1543
Score = 1794 bits (971), Expect = 0.0
Identities = 1217/1328 (92%), Gaps = 48/1328 (4%)
Strand=Plus/Plus
Query 1 AAAAATCTTCACGTTTC-T-TCT-T-TCTCTCTC-GAGTCTCAAGCCACCAAATCTGAAT 55
||||||||||||||||| | ||| | |||||||| |||| |||||||||||||||||
Sbjct 194 AAAAATCTTCACGTTTCTTCTCTCTCTCTCTCTCTCTCTCTCGAGCCACCAAATCTGAAT 253
Query 56 TAGGGTTTTTGAGAATCTTCATCTTTTGATTTCAATTTTTAATCACCCACTGTGTAA-TT 114
|||||||||||||||| |||||||||||||||||| || | ||||||||||||||| ||
Sbjct 254 TAGGGTTTTTGAGAATATTCATCTTTTGATTTCAAATTCT--TCACCCACTGTGTAATTT 311
Query 115 CACTCGTCAGGATTCATCTGTGAAATCATGATTTCAGATTCGATCACCAACGCTTCTGCT 174
|||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||
Sbjct 312 CACTCGTCAGGATTCATCTGCGGAATCATGATTACAGATTCGATCACCAACGCTTCTGCT 371
Query 175 ACTTCAGCTCCAAGAGATTCCGGGAAGAAGAAGAGGAACAATAAGTCGGCTAAGATGAAG 234
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 372 ACTTCAGCTCCGAGAGATTCCGGAAAGAAGAAGAGGAACAATAAGTCGGCTAAGATGAAG 431
Query 235 CAGAACAAGCTTGGTCTCCGTCGTGAGCAATGGCTTTCTCAAGTTGCGGTGAGCAATAAG 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 432 CAGAACAAGCTTGGTCTCCGTCGTGAGCAATGGCTTTCTCAAGTTGCGGTGAGCAATAAG 491
Query 295 GAAGGTAAAGAGGAGAGGAGTGTTAATCGAAGTGAAAAG-----TC-T--GA--TC---- 340
|||| |||||||||||||||||||||||| ||| ||||| || | || ||
Sbjct 492 GAAGTTAAAGAGGAGAGGAGTGTTAATCGTAGTCAAAAGCCTCATCATGAGAGTTCAGAT 551
Query 341 -AGGTGTGTAGAGAAGAGGGTAATAACGGTGGGAATAA---TCTTCATCATGAGAGTTTT 396
||||| |||||||||||| ||| || ||||||||||| |||||||||||||||||||
Sbjct 552 AAGGTGCGTAGAGAAGAGGATAACAATGGTGGGAATAATCTTCTTCATCATGAGAGTTTT 611
Query 397 ATGGAGTCGCCTTCGAATAGCTCTGTTGGTGGTACAGATTCAAGCACTAATTTCAGTGGG 456
|||||||| ||||| ||||||||||||||||||||| |||| |||||||| |||||||||
Sbjct 612 ATGGAGTCACCTTCAAATAGCTCTGTTGGTGGTACATATTCGAGCACTAACTTCAGTGGG 671
Query 457 AGAAGTAGCAGGAGTAGTGGTAGCAGCAGTGGCTTTTGCTCTGGTAATGTAACAGAAGAG 516
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 672 AGAAGTAGCAGGAGTAGTAGTAGCAGCAGTGGCTTTTGCTCTGGTAATATAACAGAAGAG 731
Query 517 GAAAATGTAgatgatgatgatgatgatgatgatgGGTGTGTGGATGATTGGGAAGCTGTT 576
| || | ||| | | || |||||||||||||||||||||||||||||||||||||||
Sbjct 732 G--AA---A-ATG-T-A-GACGATGATGATGATGGGTGTGTGGATGATTGGGAAGCTGTT 782
Query 577 GCTGATGCGTTAGCGGCTGAGGAAGAGATTGAGAAAGAGAGTCGTCTTCATGAGTCTGTC 636
|||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||
Sbjct 783 GCTGATGCGTTAGCGGCTGAGGAAGAGATTGAGAAAAAGAGTCGTCCTCTTGAGTCTGTG 842
Query 637 AAAGAGCAAGAGAGTGTTGGACAATCAGCTTCTAATGTGTGTGATTCG---ATAAGGGAT 693
|||||||||| ||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 843 AAAGAGCAAGTGAGTGTTGGACAATCAGCTTCTAATGTGTGTGATTCGTCGATTAGTGAT 902
Query 694 GCATCAGATGTTGTGTGTGTTAAAGATCCAGAGCAGGATTGCTTGAGAGTGGCTTCAAGG 753
||||||||||||||| ||||| |||||||| ||||||| |||||||||||| | ||||||
Sbjct 903 GCATCAGATGTTGTGGGTGTTGAAGATCCAAAGCAGGAATGCTTGAGAGTGTCATCAAGG 962
Query 754 AAGCAAGAG-AGTAATAGAGCTTGGAGGCCAGATGATGACCTTCGCCCTCAGGGGTTACC 812
||||| || ||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 963 AAGCA-GACTAGTAATAGAGCTTGGAGGCTAGATGATGACCTTCGCCCACAGGGGTTACC 1021
Query 813 TAATTTGGCGAAGCAGCTTAGTTTTCCTGAGTTAGACAAGCGTTTTAGCTCTGTGGCGAT 872
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1022 TAATTTGGCGAAGCAGCTTAGTTTTCCGGAGTTAGACAAGCGTTTTAGCTCTGTGGCGAT 1081
Query 873 TCCGTCTTCATGTCCCATATGCTACGAAGACTTGGACTTGACGGATTCAAATTTTCTGCC 932
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||
Sbjct 1082 TCCGTCTTCATGTCCCATATGCTACGAAGACTTGGACTTGACGGATTCGAATTTCCTCCC 1141
Query 933 TTGTCCTTGCGGATTCCGGCTCTGTCTGTTCTGCCACAAGACAATTTGCGATGGAGATGG 992
|||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1142 CTGTCCTTGTGGATTTCGGCTCTGTCTGTTCTGCCACAAGACCATTTGCGATGGAGATGG 1201
Query 993 GCGTTGTCCAGGGTGCAGGAAACCTTATGAACGGAATGCGATCAAGGCTGAGACTAGTAT 1052
|||||||||||| ||||||||||| |||||||||||| | |||||||||||||||||||
Sbjct 1202 GCGTTGTCCAGGCTGCAGGAAACCCTATGAACGGAATATGGTCAAGGCTGAGACTAGTAT 1261
Query 1053 TCAAGGTGGTGGTCTAACAATTCGGTTGGCTCGTTCTTCTAGCATGTTTTGCAAGTTTTA 1112
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1262 TCAAGGTGGTGGTCTAACAATTCGGTTGGCTCGTTCGTCTAGCATGTTTTGCAAGTTTTA 1321
Query 1113 AAAGGAGAGCTGCGGTTTTCGCAAAACCATGTTGTCTTTTGGAACTCGAGAACTTGTGCG 1172
||||||||| |||||||||| ||| ||||||||||||||||||||||||||||| ||
Sbjct 1322 AAAGGAGAGGTGCGGTTTTCTCAA--CCATGTTGTCTTTTGGAACTCGAGAACTTAAGC- 1378
Query 1173 T-TGTTTTCTATGTCATCGATGGTTCTAAGTCTGAAACACTGTGGTGATGATGTAGAGTG 1231
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1379 TCTGTTTTCTATGTCATCTATGGTTCTAAGTCTGAAACACTGTGGTGATGATGTAGAATG 1438
Query 1232 TGATGTGTGAATACATAAA-GGTGGTACAGAAAAT--T-CAAATACATTTAGATAGTTTC 1287
||||||||||||||||||| ||||||||||||||| | |||||||||||||||||||||
Sbjct 1439 TGATGTGTGAATACATAAAAGGTGGTACAGAAAATGATTCAAATACATTTAGATAGTTTC 1498
Query 1288 AATAATGA 1295
||||||||
Sbjct 1499 AATAATGA 1506
> AT3G48070.2 | Symbols: | RING/U-box superfamily protein | chr3:17750712-17752761
FORWARD LENGTH=1307
Length=1307
Score = 152 bits (82), Expect = 8e-36
Identities = 236/304 (78%), Gaps = 35/304 (12%)
Strand=Plus/Plus
Query 1 AAAAATCTTCACGTTTCTTCTTTC-TC-TCTCGAGTCTCAAGCCACCAAATCTGAATTAG 58
||||||| ||||||||||| ||| || |||| |||| | || |||||||| |||||
Sbjct 31 AAAAATC-GCACGTTTCTTC-TTCTTCTTCTC---TCTC--G-CAACAAATCTGTATTAG 82
Query 59 GGTTTTTGAG-AATCTTCATCTT-TTGA-TTT-CAATTT-TTAATCA-CCCACTGTGTAA 112
|||||||||| ||||||||| || ||| ||| ||||| || | | | | |||
Sbjct 83 GGTTTTTGAGAAATCTTCAT-TTCGTGATTTTGAAATTTATTTGT-ATTTGATTTTGTTG 140
Query 113 TTCACTCGTCAGGATTCATCTGTGAA--ATCATGATTTCAGATTCGATCACCAACGCTTC 170
|| || | ||| ||||||| || | ||||||||| ||||||||||||||||||||
Sbjct 141 TT-GCT--T-TGGAATCATCTG-CAACCACCATGATTTCTGATTCGATCACCAACGCTTC 195
Query 171 TGCTACTTCAGCTCCAA--G--AG--ATTCCGGGAAGAAGAAGAGGAAC-AATAAGTCGG 223
||||||||||||||||| | || ||| ||| || ||||| |||| | || | |||||
Sbjct 196 TGCTACTTCAGCTCCAACCGCCAGGGATTTCGGAAAAAAGAAAAGGA-CGAACAGGTCGG 254
Query 224 CTAAGAT-GAAGCAGAACAAGCTTGGTCTCCGTCGTGAGCAATGGCTTTCTCAAGTTGCG 282
| || || ||| |||| |||||| ||||| |||||||| |||||||||||||||||||||
Sbjct 255 CCAA-ATTGAAACAGAGCAAGCTAGGTCTTCGTCGTGAACAATGGCTTTCTCAAGTTGCG 313
Query 283 GTGA 286
|||
Sbjct 314 ATGA 317
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5