BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg496493 Length=1725 Score E Sequences producing significant alignments: (Bits) Value AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | ... 2782 0.0 > AT5G63110.1 | Symbols: HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | histone deacetylase 6 | chr5:25315624-25318347 REVERSE LENGTH=1746 Length=1746 Score = 2782 bits (1506), Expect = 0.0 Identities = 1660/1734 (96%), Gaps = 11/1734 (1%) Strand=Plus/Plus Query 1 TAGTAATGACTTTCTCAGGCATAGTAGACACAAATTTTGCTCGGAGTAAAAACTTGGGGA 60 |||||||||||||||||||||| || |||||||||||||||| |||| |||||||||| | Sbjct 15 TAGTAATGACTTTCTCAGGCATTGTTGACACAAATTTTGCTCTGAGT-AAAACTTGGGAA 73 Query 61 Tagagagagacagagactctgagtgaga----ga--gagagaCGAAGATGGAGGCAGACG 114 ||||||||||| || | ||| |||| || |||||||| ||||||||||||||| Sbjct 74 TAGAGAGAGACTCTGAGTGAGAGAGAGATTCTGAGTGAGAGACGGAGATGGAGGCAGACG 133 Query 115 AAAGCGGCATCTCTCTGCCGTCGGGACCCGACGGACGTAAGCGGCGAGTCAGTTACTTCT 174 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 134 AAAGCGGCATCTCTCTGCCGTCGGGACCCGACGGACGTAAGCGGCGAGTCAGTTACTTCT 193 Query 175 ACGAGCCGACGATCGGAGACTACTACTACGGTCAAGGACATCCGATGAAACCTCACCGGA 234 ||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| Sbjct 194 ACGAGCCGACGATCGGAGACTACTACTACGGTCAAGGCCACCCGATGAAGCCTCACCGGA 253 Query 235 TCCGTATGGCTCATAGCCTAATCATTCACTATCACCTCCACCGTCGCTTAGAAATCAGTC 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 254 TCCGTATGGCTCATAGCCTAATCATTCACTATCACCTCCACCGTCGCTTAGAAATCAGTC 313 Query 295 GCCCTAACCTCGCTGACGCCTCCGATATCGGCCGGTTTCATTCGCCGGAGTATGTTGATT 354 |||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| | Sbjct 314 GCCCTAGCCTCGCTGACGCCTCCGATATCGGCCGATTCCATTCGCCGGAGTATGTTGACT 373 Query 355 TCCTCGCTTCCGTTTCGCCGGAATCTATGGGCGATCCTTCCTCTTCACGAAACCTAAGGC 414 ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 374 TCCTCGCTTCCGTTTCGCCGGAATCTATGGGCGATCCTTCCGCTGCACGAAACCTAAGGC 433 Query 415 GATTCAATGTCGGTGAGGATTGTCCTGTCTTCGACGGACTTTTTGATTTTTGCCGTGCTT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 434 GATTCAATGTCGGTGAGGATTGTCCTGTCTTCGACGGACTTTTTGATTTTTGCCGTGCTT 493 Query 475 CCGCCGGAGGTTCTATTGGTGCTGCCGTCAAATTAAACAGACAGGACGCTGATATCGCTA 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 494 CCGCCGGAGGTTCTATTGGTGCTGCCGTCAAATTAAACAGACAGGACGCTGATATCGCTA 553 Query 535 TCAATTGGGGCGGTGGCCTTCACCATGCTAAGAAAAGCGAGGCCTCTGGGTTTTGCTATG 594 |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 554 TCAATTGGGGCGGTGGGCTTCACCATGCTAAGAAAAGCGAGGCTTCTGGGTTTTGCTATG 613 Query 595 TAAATGATATCGTTTTAGGGATTCTCGAGTTGCTCAAGATGTTTAAGCGGGTTCTCTACA 654 |||| || ||||| |||||||||| |||||||||||||||||||||||||||||||||| Sbjct 614 TAAACGACATCGTGCTAGGGATTCTGGAGTTGCTCAAGATGTTTAAGCGGGTTCTCTACA 673 Query 655 TAGATATCGATGTCCACCATGGAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAG 714 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 674 TAGATATTGATGTCCACCATGGAGATGGAGTGGAAGAAGCGTTTTACACCACTGATAGAG 733 Query 715 TTATGACTGTTTCTTTCCACAAATTTGGGGACTTTTTCCCCGGAACTGGTCACATAAGAG 774 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 734 TTATGACTGTTTCTTTCCACAAATTTGGGGACTTTTTCCCAGGAACTGGTCACATAAGAG 793 Query 775 ATGTTGGCGCAGAAAAAGGGAAATACTATGCTCTAAATGTTCCGCTAAACGATGGTATGG 834 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 794 ATGTTGGCGCTGAAAAAGGGAAATACTATGCTCTAAATGTTCCACTAAACGATGGTATGG 853 Query 835 ACGATGAACGTTTCCGCAGCTTGTTTAGACCTCTTATCCAGAAGGTTATGGAAGTGTATC 894 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 854 ACGATGAAAGTTTCCGCAGCTTGTTTAGACCTCTTATCCAGAAGGTTATGGAAGTGTATC 913 Query 895 AGCCAGAGGCAGTTGTTCTTCAATGTGGGGCTGACTCGTTAAGTGGTGATCGGTTGGGTT 954 |||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||| Sbjct 914 AGCCAGAGGCAGTTGTTCTTCAGTGTGGTGCTGACTCCTTAAGTGGTGATCGGTTGGGTT 973 Query 955 GCTTCAACTTATCAGTCAAGGGTCACGCTGATTGCCTTCGGTTCTTAAGATCTTACAACG 1014 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 974 GCTTCAACTTATCAGTCAAGGGTCACGCTGATTGCCTTCGGTTCTTAAGATCTTACAACG 1033 Query 1015 TTCCTCTCATGGTCTTGGGTGGTGGAGGGTATACTATTCGAAATGTTGCTCGTTGCTGGT 1074 ||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1034 TTCCTCTCATGGTGTTGGGTGGTGGAGGGTATACTATTCGAAATGTTGCCCGTTGCTGGT 1093 Query 1075 GTTATGAGACTGCAGTTGCTGTTGGAGTAGAGCCAGACAACAAACTCCCTTACAATGAGT 1134 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1094 GTTATGAGACTGCAGTTGCTGTTGGAGTAGAGCCGGACAACAAACTCCCTTACAATGAGT 1153 Query 1135 ATTTTGAGTATTTCGGCCCAGATTATACGCTTCATGTCGACCCAGGTCCAATGGAGAATT 1194 |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| Sbjct 1154 ATTTTGAGTATTTCGGCCCAGATTATACGCTTCATGTCGACCCAAGTCCTATGGAGAATT 1213 Query 1195 TAAACACGCCAAAAGATATGGAGAAGATAAGGAACACATTGCTGGAACAACTTTCGGGAC 1254 |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 1214 TAAACACGCCCAAAGATATGGAGAGGATAAGGAACACGTTGCTGGAACAACTTTCGGGAC 1273 Query 1255 TAATACACGCACCTAGCGTCCAGTTTCAGCACACACCACCAGTCAATCGAGTTTTGGACG 1314 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1274 TAATACACGCACCTAGCGTCCAGTTTCAGCACACACCACCAGTCAATCGAGTTTTGGACG 1333 Query 1315 AGCCGGAAGAAGACATGGAG-CAAAGACCAAAGCCTCGCATTTGGAGTGGAACTGTGACT 1373 |||||||||| ||||||||| ||| ||||||| |||||||| ||||||||||||| |||| Sbjct 1334 AGCCGGAAGATGACATGGAGACAA-GACCAAAACCTCGCATCTGGAGTGGAACTGCGACT 1392 Query 1374 TATGAATCAGACAGTGACGATGATGATAAACCTCTTCATGGTTACTCAGGTCGTGGTGGC 1433 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1393 TATGAATCAGACAGTGACGATGATGATAAACCTCTTCATGGTTACTCATGTCGTGGTGGC 1452 Query 1434 GCAATTATGGACAGGGACTCTACAGGTGAAGATGAAATGGAAGACGATAACCCAGAGCCA 1493 |||| || ||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 1453 GCAACTACGGACAGGGACTCTACCGGTGAAGATGAAATGGATGACGATAACCCAGAGCCA 1512 Query 1494 GACGTGAATCCCCCATCGTCTTAAACCAGCTTGATGGTT-GGTGGGTCTTTTGCCATATG 1552 ||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 1513 GACGTGAATCCTCCATCGTCTTAAACCAGCTTGATGGTTTGGTGTCTCTTTTGCCATATG 1572 Query 1553 GTAATGTCGGCAGATTTAAGACACAAGTTAGGGGAATGA-TGATTCTTTCATGTTTTTTC 1611 |||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| Sbjct 1573 ATAATGTCGGCAGATTTAAGAAACAAGTTAGGGGAATGAATGATTCTTTGATGTTTTTTC 1632 Query 1612 AGCAACCTTTTGAGTTCTGTGAAAACGCTGCATTGATTAGAACGGTGACAACTGACAAGT 1671 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 1633 AGCAACCTTTTGAGTTCTGTGAAAACGCTGCATTGATTAGAACAGTGACAACTGACTAGT 1692 Query 1672 ATTTTGGCTCAAGTTAGAAAATCAGAAGATGTGAAAAATGCAAAGAAACTTTTT 1725 |||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1693 ATTTTGGCCCAAGTTAGAAAATCAGAATATGTGAAAAATGCAAAGAAACTTTTT 1746 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85290725955 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5